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Different output folders with very different results #4

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Dx-wmc opened this issue Oct 14, 2023 · 0 comments
Open

Different output folders with very different results #4

Dx-wmc opened this issue Oct 14, 2023 · 0 comments

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@Dx-wmc
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Dx-wmc commented Oct 14, 2023

Hi, @lilqilie @LorMeBioAI I have successfully installed DCiPatho and modified self.best_model_name and self.raw_fasta_path according to the readme. However, when I tried to modify the output file, I found that the predicted results were very poor. If it is set as default temp_data, the result will be 0.65 for y. But after I changed it to result, the result dropped directly to 0.0007, which is very confusing? In addition, the results are different when I run them on different machines. This is strange and I don't know where the problem occurred.

this is the modified config file:

# set combined_fasta_path if needed or just by default
self.combined_fasta_path = 'results/temp_combined_fna.fasta'
#  settings for calculation of kmer frequency of fasta
self.ks = [3, 4, 5, 6, 7]
self.num_procs = 8
self.freqs_file = 'results/freqs_file.npy'
self.save_res_path = 'results/results_for_pre.csv'
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