CVODE example guide (currently without Deep Dive) #377
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example_utilities.hpp requires `stoi` and similar methods. These are declared in `<string>`, but `<string>` is not included. This means this file will break any TU it's included in. Resolves #330 Co-authored-by: Cody Balos <[email protected]>
Fixes #335 Co-authored-by: David Gardner <[email protected]>
Fixes #333. Some other typedefs already had specialized (towards idas or cvodes) prefixed names, it won't harm to generalize this. --------- Co-authored-by: Cody Balos <[email protected]>
Add scripts for comparing benchmark and example timings against release timings and a notebook using Thicket to visualize data --------- Co-authored-by: David J. Gardner <[email protected]> Co-authored-by: Cody J. Balos <[email protected]>
Fixes part of #253 by avoiding nested loops that take `O(M*N)` operations. Also fixes #256. --------- Signed-off-by: phannebohm <[email protected]> Co-authored-by: Cody Balos <[email protected]>
Fix missing soversion on some SUNLinSol and SUNNonlinSol targets --------- Signed-off-by: Julien Schueller <[email protected]> Co-authored-by: Cody Balos <[email protected]>
1. Adds missing implicit tables to the ARKODE constants docs 2. Makes formatting of constants consistent in ARKODE docs 3. Groups implicit tables by order --------- Co-authored-by: David Gardner <[email protected]>
Update ARKStepSetTableNum to recognize ARK2-3-1-2 as a valid ARK pair.
Fixes #339: A regression was introduced by the stop time bug fix in v6.6.1 causing integrators to return at the stop time rather than the requested output time if the stop time was reached in the same step in which the output time was passed. Also fixes a missing check in ARKODE to interpolate (or not) the solution at the stop time.
Fix CVodeQuadSStolerances docs, add CVodeQuadSVtolerances docs (Fixes #340)
Only adding the `Sofroniou-Spaletta-5-3-4` method but not changing the defaults like #345 --------- Co-authored-by: Daniel R. Reynolds <[email protected]> Co-authored-by: David Gardner <[email protected]>
This PR adds the ginkgo dpcpp support in the examples: sunmatrix, sunlinsol, and cvode/cv_heat2D I currently only know `queue->wait_and_throw()` to synchronize which requires queue unlike `cudaDeviceSynchronize` or `hipDeviceSynchronize` In sunlinsol and cv_heat2D, some function signatures are also used in other files such that I can not pass an additional parameter. I use global variable to store ginkgo executor and then get the queue when SYCL needs sync or submit the kernel in those functions. --------- Signed-off-by: Yu-Hsiang M. Tsai <[email protected]> Co-authored-by: Cody Balos <[email protected]>
Always append hipblas and hipsparse CMake targets with HIP backend as these libraries are not reliably included in the pkgconfig file. Replace cublas and cusparse with the CMake targets because the library path in the pkgconfig file is not reliable. Specifically, the path is wrong on systems using the NVIDIA HPC SDK. --------- Co-authored-by: David Gardner <[email protected]>
Added Fortran support for the LAPACK dense SUNLinearSolver implementation. --------- Co-authored-by: Daniel R. Reynolds <[email protected]>
Additional embedded explicit Runge--Kutta methods to ARKODE. --------- Co-authored-by: Steven Roberts <[email protected]> Co-authored-by: David J. Gardner <[email protected]>
Updated `SUNProfiler` to note rely on `MPI_WTime`. Fixes #312 --------- Co-authored-by: David Gardner <[email protected]>
Fix the description of `ONE_STEP` mode in ARKODE. The solution at the end of the step is always returned and interpolation is not performed.
Upload artifact with just output files so the artifact is smaller --------- Co-authored-by: David Gardner <[email protected]>
Remove unused files from the repo
* Cancel existing workflow on new push * Add dispatch trigger for all actions * Upload all outputs from testing directory --------- Co-authored-by: Cody Balos <[email protected]>
Remove F77 interface examples from `develop` branch. Once this PR is merged, a new `archive` branch can be created for easy reference until #302 is merged and the `archive` branch can be deleted. --------- Co-authored-by: Cody Balos <[email protected]>
Simplify tarscript to include directories rather than individual files --------- Co-authored-by: Cody Balos <[email protected]>
Fixed a bug in ERKStep where methods with `c[s-1] = 1` but `a[s-1,j] != b[j]` were incorrectly treated as having the first same as last (FSAL) property. Fixed a bug in `MRIStepCoupling_Write` where explicit coupling tables were not written to the output file pointer. ARKStep, ERKStep, MRIStep, and SPRKStep were updated to remove a potentially unnecessary right-hand side evaluation at the end of an integration. ARKStep was additionally updated to remove extra right-hand side evaluations when using an explicit method or an implicit method with an explicit first stage. The `MRIStepInnerStepper` class in MRIStep was updated to make supplying an `MRIStepInnerFullRhsFn` optional. --------- Co-authored-by: Daniel R. Reynolds <[email protected]> Co-authored-by: Cody Balos <[email protected]>
New object-oriented infrastructure for time step adaptivity controllers. --------- Co-authored-by: David J. Gardner <[email protected]> Co-authored-by: Balos, Cody, J <[email protected]> Co-authored-by: Cody Balos <[email protected]>
Add developer docs to RTD superbuild Add instructions for updating answers in the developer docs. --------- Co-authored-by: David Gardner <[email protected]>
Remove deprecated functions --------- Co-authored-by: Daniel R. Reynolds <[email protected]>
Remove `realtype`, `booleantype`, and related deprecated macros. --------- Co-authored-by: Daniel R. Reynolds <[email protected]> Co-authored-by: Steven Roberts <[email protected]> Co-authored-by: David J. Gardner <[email protected]>
Fix table name for the implicit part of 5th order IMEX-ARK methods
drreynolds
requested review from
balos1,
gardner48 and
cswoodward
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This is a cleaned up PR for #309, that only includes changes inside the
docfolder.