diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index 2d2fd5d..6ff51f8 100644
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diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
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diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index bb10aef..026fa92 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -11,6 +11,15 @@ LaSDI maps full-order PDE solutions to a latent space using autoencoders and lea
 By interpolating and solving the ODE system in the reduced latent space, fast and accurate ROM predictions can be made by feeding the predicted latent space dynamics into the decoder.
 It also supports parametric interpolation of latent dynamics according to uncertainties evaluated via Gaussian process.
 
+References
+===================
+* Fries, William D., Xiaolong He, and Youngsoo Choi. "LaSDI: Parametric latent space dynamics identification." Computer Methods in Applied Mechanics and Engineering 399 (2022): 115436.
+* He, Xiaolong, Youngsoo Choi, William D. Fries, Jonathan L. Belof, and Jiun-Shyan Chen. "gLaSDI: Parametric physics-informed greedy latent space dynamics identification." Journal of Computational Physics 489 (2023): 112267.
+* Tran, April, Xiaolong He, Daniel A. Messenger, Youngsoo Choi, and David M. Bortz. "Weak-form latent space dynamics identification." Computer Methods in Applied Mechanics and Engineering 427 (2024): 116998.
+* Park, Jun Sur Richard, Siu Wun Cheung, Youngsoo Choi, and Yeonjong Shin. "tLaSDI: Thermodynamics-informed latent space dynamics identification." arXiv preprint arXiv:2403.05848 (2024).
+* Bonneville, Christophe, Youngsoo Choi, Debojyoti Ghosh, and Jonathan L. Belof. "Gplasdi: Gaussian process-based interpretable latent space dynamics identification through deep autoencoder." Computer Methods in Applied Mechanics and Engineering 418 (2024): 116535.
+* He, Xiaolong, April Tran, David M. Bortz, and Youngsoo Choi. "Physics-informed active learning with simultaneous weak-form latent space dynamics identification." arXiv preprint arXiv:2407.00337 (2024).
+
 .. toctree::
    :maxdepth: 2
    :caption: Contents:
diff --git a/index.html b/index.html
index 36015fb..a2be2bd 100644
--- a/index.html
+++ b/index.html
@@ -77,6 +77,17 @@ <h1>LaSDI documentation<a class="headerlink" href="#lasdi-documentation" title="
 LaSDI maps full-order PDE solutions to a latent space using autoencoders and learns the system of ODEs governing the latent space dynamics.
 By interpolating and solving the ODE system in the reduced latent space, fast and accurate ROM predictions can be made by feeding the predicted latent space dynamics into the decoder.
 It also supports parametric interpolation of latent dynamics according to uncertainties evaluated via Gaussian process.</p>
+</section>
+<section id="references">
+<h1>References<a class="headerlink" href="#references" title="Permalink to this heading"></a></h1>
+<ul class="simple">
+<li><p>Fries, William D., Xiaolong He, and Youngsoo Choi. “LaSDI: Parametric latent space dynamics identification.” Computer Methods in Applied Mechanics and Engineering 399 (2022): 115436.</p></li>
+<li><p>He, Xiaolong, Youngsoo Choi, William D. Fries, Jonathan L. Belof, and Jiun-Shyan Chen. “gLaSDI: Parametric physics-informed greedy latent space dynamics identification.” Journal of Computational Physics 489 (2023): 112267.</p></li>
+<li><p>Tran, April, Xiaolong He, Daniel A. Messenger, Youngsoo Choi, and David M. Bortz. “Weak-form latent space dynamics identification.” Computer Methods in Applied Mechanics and Engineering 427 (2024): 116998.</p></li>
+<li><p>Park, Jun Sur Richard, Siu Wun Cheung, Youngsoo Choi, and Yeonjong Shin. “tLaSDI: Thermodynamics-informed latent space dynamics identification.” arXiv preprint arXiv:2403.05848 (2024).</p></li>
+<li><p>Bonneville, Christophe, Youngsoo Choi, Debojyoti Ghosh, and Jonathan L. Belof. “Gplasdi: Gaussian process-based interpretable latent space dynamics identification through deep autoencoder.” Computer Methods in Applied Mechanics and Engineering 418 (2024): 116535.</p></li>
+<li><p>He, Xiaolong, April Tran, David M. Bortz, and Youngsoo Choi. “Physics-informed active learning with simultaneous weak-form latent space dynamics identification.” arXiv preprint arXiv:2407.00337 (2024).</p></li>
+</ul>
 <div class="toctree-wrapper compound">
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
diff --git a/searchindex.js b/searchindex.js
index 54385d8..e1cacb6 100644
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\ No newline at end of file
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attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dim"]], "dt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dt"]], "dx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dx"]], "export() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.export"]], "grid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.grid_size"]], "initial_condition() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.initial_condition"]], "jacobian() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.jacobian"]], "lasdi.physics.burgers1d": [[11, "module-lasdi.physics.burgers1d"]], "main() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.main"]], "maxk (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.maxk"]], "nt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.nt"]], "offline (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.offline"]], "parser (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.parser"]], "qdim (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qdim"]], "qgrid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qgrid_size"]], "residual() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.residual"]], "residual_burgers() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.residual_burgers"]], "solve() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.solve"]], "solver() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.solver"]], "t_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.t_grid"]], "tmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.tmax"]], "w_idx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.w_idx"]], "x_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.x_grid"]], "xmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmax"]], "xmin (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmin"]], "offlinefom (class in lasdi.physics)": [[12, "lasdi.physics.OfflineFOM"]], "physics (class in lasdi.physics)": [[12, "lasdi.physics.Physics"]], "dim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dim"]], "dim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dim"]], "dt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dt"]], "dt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dt"]], "export() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.export"]], "export() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.export"]], "generate_solutions() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.generate_solutions"]], "generate_solutions() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.generate_solutions"]], "grid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.grid_size"]], "grid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.grid_size"]], "initial_condition() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.initial_condition"]], "lasdi.physics": [[12, "module-lasdi.physics"]], "nt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.nt"]], "nt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.nt"]], "offline (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.offline"]], "offline (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.offline"]], "param_name (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.param_name"]], "parser (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.parser"]], "qdim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qdim"]], "qdim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qdim"]], "qgrid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qgrid_size"]], "qgrid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qgrid_size"]], "residual() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.residual"]], "solve() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.solve"]], "t_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.t_grid"]], "t_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.t_grid"]], "x_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.x_grid"]], "x_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.x_grid"]], "compute_errors() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.compute_errors"]], "heatmap2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.heatmap2d"]], "lasdi.postprocess": [[13, "module-lasdi.postprocess"]], "plot_gp2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_gp2d"]], "plot_prediction() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_prediction"]], "timer (class in lasdi.timing)": [[14, "lasdi.timing.Timer"]], "calls (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.calls"]], "end() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.end"]], "export() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.export"]], "lasdi.timing": [[14, "module-lasdi.timing"]], "load() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.load"]], "names (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.names"]], "print() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.print"]], "start() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.start"]], "starts (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.starts"]], "times (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.times"]], "collect_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.collect_samples"]], "initialize_latent_space() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_latent_space"]], "initialize_physics() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_physics"]], "initialize_trainer() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_trainer"]], "lasdi.workflow": [[15, "module-lasdi.workflow"]], "latent_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.latent_dict"]], "ld_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.ld_dict"]], "main() (in module lasdi.workflow)": [[15, "lasdi.workflow.main"]], "parser (in module lasdi.workflow)": [[15, "lasdi.workflow.parser"]], "physics_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.physics_dict"]], "pick_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.pick_samples"]], "run_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.run_samples"]], "step() (in module lasdi.workflow)": [[15, "lasdi.workflow.step"]], "trainer_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.trainer_dict"]]}})
\ No newline at end of file