diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index e0f83c2fc..000000000 --- a/.travis.yml +++ /dev/null @@ -1,10 +0,0 @@ -language: julia - -os: - - linux - -julia: - - 1.6 - -notifications: - email: false diff --git a/README.md b/README.md index 47237b005..6cd18db13 100644 --- a/README.md +++ b/README.md @@ -36,6 +36,12 @@ This package provides constraint-based reconstruction and analysis tools for exa-scale metabolic modeling in Julia. +**This repository contains the "legacy" version of COBREXA (version 1.x). +COBREXA development is continuing at +[github.com/COBREXA](https://github.com/COBREXA/) with a much-improved version +2.x, and many other new packages. Unless you need version 1.x for compatibility +reasons, we recommend switching to version 2!** + ## How to get started ### Prerequisites and requirements @@ -80,9 +86,14 @@ of the package). You can install COBREXA from Julia repositories. Start `julia`, **press `]`** to switch to the Packaging environment, and type: ``` -add COBREXA +add COBREXA@1 ``` +(Note: the above command installs the "1.x" version of COBREXA, which is what +is described in this repository and the associated documentation. If you are +not limited by compatibility and similar reasons, consider updating to [COBREXA +2](https://github.com/COBREXA/COBREXA.jl).) + You also need to install your favorite solver supported by `JuMP.jl` (such as Gurobi, Mosek, CPLEX, GLPK, Clarabel, etc., see a [list here](https://jump.dev/JuMP.jl/stable/installation/#Supported-solvers)). For