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CITATION.cff
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cff-version: 1.2.0
title: COBREXA.jl
message: >-
If you use COBREXA.jl and want to refer to it in
your work, use this citation.
type: software
authors:
- given-names: Miroslav
family-names: Kratochvíl
orcid: https://orcid.org/0000-0001-7356-4075
- given-names: Laurent
family-names: Heirendt
orcid: https://orcid.org/0000-0003-1861-0037
- given-names: St Elmo
family-names: Wilken
orcid: https://orcid.org/0000-0002-4113-2590
- given-names: Taneli
family-names: Pusa
orcid: https://orcid.org/0000-0003-2183-8876
- given-names: Sylvain
family-names: Arreckx
orcid: https://orcid.org/0000-0002-8112-2135
- given-names: Alberto
family-names: Noronha
orcid: https://orcid.org/0000-0002-0935-4599
- given-names: Marvin
family-names: van Aalst
orcid: https://orcid.org/0000-0002-7434-0249
- given-names: Venkata P
family-names: Satagopam
orcid: https://orcid.org/0000-0002-6532-5880
- given-names: Oliver
family-names: Ebenhöh
orcid: https://orcid.org/0000-0002-7229-7398
- given-names: Reinhard
family-names: Schneider
orcid: https://orcid.org/0000-0002-8278-1618
- given-names: Christophe
family-names: Trefois
orcid: https://orcid.org/0000-0002-8991-6810
- given-names: Wei
family-names: Gu
orcid: https://orcid.org/0000-0003-3951-6680
repository-code: 'https://github.com/LCSB-BioCore/COBREXA.jl'
date-released: 2021-05-16
preferred-citation:
type: article
title: >-
COBREXA.jl: constraint-based reconstruction and
exascale analysis
authors:
- given-names: Miroslav
family-names: Kratochvíl
orcid: https://orcid.org/0000-0001-7356-4075
- given-names: Laurent
family-names: Heirendt
orcid: https://orcid.org/0000-0003-1861-0037
- given-names: St Elmo
family-names: Wilken
orcid: https://orcid.org/0000-0002-4113-2590
- given-names: Taneli
family-names: Pusa
orcid: https://orcid.org/0000-0003-2183-8876
- given-names: Sylvain
family-names: Arreckx
orcid: https://orcid.org/0000-0002-8112-2135
- given-names: Alberto
family-names: Noronha
orcid: https://orcid.org/0000-0002-0935-4599
- given-names: Marvin
family-names: van Aalst
orcid: https://orcid.org/0000-0002-7434-0249
- given-names: Venkata P
family-names: Satagopam
orcid: https://orcid.org/0000-0002-6532-5880
- given-names: Oliver
family-names: Ebenhöh
orcid: https://orcid.org/0000-0002-7229-7398
- given-names: Reinhard
family-names: Schneider
orcid: https://orcid.org/0000-0002-8278-1618
- given-names: Christophe
family-names: Trefois
orcid: https://orcid.org/0000-0002-8991-6810
- given-names: Wei
family-names: Gu
orcid: https://orcid.org/0000-0003-3951-6680
doi: "10.1093/bioinformatics/btab782"
journal: "Bioinformatics"
volume: 38
issue: 4
year: 2021
month: 11
issn: "1367-4803"
url: "https://doi.org/10.1093/bioinformatics/btab782"
abstract: "COBREXA.jl is a Julia package for scalable, high-performance constraint-based reconstruction and analysis of very large-scale biological models. Its primary purpose is to facilitate the integration of modern high performance computing environments with the processing and analysis of large-scale metabolic models of challenging complexity. We report the architecture of the package, and demonstrate how the design promotes analysis scalability on several use-cases with multi-organism community models.https://doi.org/10.17881/ZKCR-BT30.Supplementary data are available at Bioinformatics online."