testseuratHAS.R

library(Seurat)

FindClusters(object, ...)

# S3 method for default
FindClusters(
  object,
  modularity.fxn = 1,
  initial.membership = NULL,
  node.sizes = NULL,
  resolution = 0.8,
  method = "matrix",
  algorithm = 1,
  n.start = 10,
  n.iter = 10,
  random.seed = 0,
  group.singletons = TRUE,
  temp.file.location = NULL,
  edge.file.name = NULL,
  verbose = TRUE,
  ...
)

# S3 method for Seurat
FindClusters(
  object,
  graph.name = NULL,
  modularity.fxn = 1,
  initial.membership = NULL,
  node.sizes = NULL,
  resolution = 0.8,
  method = "matrix",
  algorithm = 1,
  n.start = 10,
  n.iter = 10,
  random.seed = 0,
  group.singletons = TRUE,
  temp.file.location = NULL,
  edge.file.name = NULL,
  verbose = TRUE,
  ...
)


# Decrease resolution - grid search? 0.02- 0.8
#algorithm default 1 - louvain - change for 4 leide. Leiden requires the leidenalg python.