README.txt

 
Operating System: Debian GNU/Linux 10 (buster)
Software dependencies: We recommend Miniconda to manage the packages.
python 3.7.4
keras 2.2.4
tensorflow 1.14.0
numpy 1.16.5
pandas 0.25.2
scikit-learn 0.21.3
h5py 2.9.0
hdf5 1.10.4
jupyter 1.0.0

Non-standard Hardware: An Cuda-ready GPU is recommended, but not required. 

Installation: No installation is needed.

Demo: 
The demo is available in "mESC.ipynb". It is accessible through jupyter notebook. Instruction for each step is available in the notebook. The expected output is available in "mESC.html". On a computer equipped with an Cuda-ready GPU, it will take about 20 minutes to run. If only CPU is available, it may take around 1 hour.

The analysis of the result was done in R, and a demo is available in "mesc_analysis.Rmd". Running it will take around five seconds. The expected result is available in "mesc_analysis.nb.html".

Instructions for use:
The instruction is availabe through our github repository: https://github.com/KChen-lab/Cyclum