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Hello,
When I'm trying to follow the Tutorial 1: The Basics, an error come out "ImportError: No module named ldsc_mod.ldscore"
The following is the entire Traceback:
(py27) D:\MR repeat\MTAG\mtag-master>python "/MR repeat/MTAG/mtag-master/mtag.py"
Traceback (most recent call last):
File "/MR repeat/MTAG/mtag-master/mtag.py", line 19, in
from ldsc_mod.ldscore import sumstats as sumstats_sig
ImportError: No module named ldsc_mod.ldscore
This is my code:
python “/MR repeat/MTAG/mtag-master/mtag.py”
--sumstats “/MR repeat/MTAG/mtag-master/AF-ukb-b-11550.txt", “/MR repeat/MTAG/mtag-master/BCC-GCST90041916.txt"
--out “/MR repeat/MTAG/mtag-master/MTAG result/"/mtag_result
--n_min 0.0
--stream_stdout &
before the Tutorial 1: The Basics, I have activated the py27 and installed all the packages needed:
(py27) D:\MR repeat\MTAG\mtag-master>conda list
packages in environment at C:\Users\Lenovo.conda\envs\py27:
Hello,
When I'm trying to follow the Tutorial 1: The Basics, an error come out "ImportError: No module named ldsc_mod.ldscore"
The following is the entire Traceback:
(py27) D:\MR repeat\MTAG\mtag-master>python "/MR repeat/MTAG/mtag-master/mtag.py"
Traceback (most recent call last):
File "/MR repeat/MTAG/mtag-master/mtag.py", line 19, in
from ldsc_mod.ldscore import sumstats as sumstats_sig
ImportError: No module named ldsc_mod.ldscore
This is my code:
python “/MR repeat/MTAG/mtag-master/mtag.py”
--sumstats “/MR repeat/MTAG/mtag-master/AF-ukb-b-11550.txt", “/MR repeat/MTAG/mtag-master/BCC-GCST90041916.txt"
--out “/MR repeat/MTAG/mtag-master/MTAG result/"/mtag_result
--n_min 0.0
--stream_stdout &
before the Tutorial 1: The Basics, I have activated the py27 and installed all the packages needed:
(py27) D:\MR repeat\MTAG\mtag-master>conda list
packages in environment at C:\Users\Lenovo.conda\envs\py27:
Name Version Build Channel
argparse 1.4.0 pypi_0 pypi
bitarray 1.2.0 py27h0c8e037_0 defaults
blas 1.0 mkl defaults
certifi 2020.6.20 pyhd3eb1b0_3 defaults
icc_rt 2022.1.0 h6049295_2 defaults
intel-openmp 2022.0.0 haa95532_3663 defaults
joblib 0.14.1 py_0 defaults
mkl 2020.2 256 defaults
mkl-service 2.3.0 py27h0b88c2a_0 defaults
mkl_fft 1.0.15 py27h44c1dab_0 defaults
numpy 1.16.6 py27hcd21bde_0 defaults
numpy-base 1.16.6 py27hb1d0314_0 defaults
pandas 0.24.2 py27hc56fc5f_0 defaults
pip 19.3.1 py27_0 defaults
python 2.7.15 h2880e7c_4 defaults
python-dateutil 2.8.2 pyhd3eb1b0_0 defaults
pytz 2021.3 pyhd3eb1b0_0 defaults
scipy 1.2.1 py27h4c3ab11_0 defaults
setuptools 44.0.0 py27_0 defaults
six 1.16.0 pyhd3eb1b0_1 defaults
vc 9 h2eaa2aa_6 defaults
vs2008_runtime 9.00.30729.1 haa95532_6 defaults
wheel 0.37.1 pyhd3eb1b0_0 defaults
wincertstore 0.2 py27hf04cefb_0 defaults
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