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slurm-10705943.out
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slurm-10705943.out
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/home/p278113/project/USEARCH94
usearch v9.2.64_i86linux32, 4.0Gb RAM (132Gb total), 24 cores
(C) Copyright 2013-16 Robert C. Edgar, all rights reserved.
http://drive5.com/usearch
License: [email protected]
00:01 37Mb 0.1% Reading seqs.fa00:01 135Mb 100.0% Reading seqs.fa
00:02 236Mb 0.0% DF 00:02 236Mb 100.0% DF
00:02 240Mb 177148 seqs, 133119 uniques, 120337 singletons (90.4%)
00:02 240Mb Min size 1, median 1, max 248, avg 1.33
00:02 209Mb 0.0% Writing uniques.fa00:03 209Mb 44.9% Writing uniques.fa00:03 209Mb 100.0% Writing uniques.fa
head: cannot open `uniques.fasta' for reading: No such file or directory
usearch v9.2.64_i86linux32, 4.0Gb RAM (132Gb total), 24 cores
(C) Copyright 2013-16 Robert C. Edgar, all rights reserved.
http://drive5.com/usearch
License: [email protected]
00:01 38Mb 0.1% 0 OTUs, 0 chimeras00:02 50Mb 1.1% 443 OTUs, 126 chimeras00:03 52Mb 3.4% 1004 OTUs, 487 chimeras00:04 54Mb 5.2% 1425 OTUs, 832 chimeras00:05 55Mb 6.8% 1758 OTUs, 1217 chimeras00:06 56Mb 8.2% 2000 OTUs, 1616 chimeras00:06 57Mb 100.0% 2188 OTUs, 1972 chimeras
2188
usearch v9.2.64_i86linux32, 4.0Gb RAM (132Gb total), 24 cores
(C) Copyright 2013-16 Robert C. Edgar, all rights reserved.
http://drive5.com/usearch
License: [email protected]
00:00 37Mb 0.1% Reading otus.fa00:00 41Mb 100.0% Reading otus.fa
00:00 7.6Mb 0.1% Masking (fastnucleo)00:00 7.6Mb 100.0% Masking (fastnucleo)
00:00 8.4Mb 0.1% Word stats 00:01 8.5Mb 13.8% Word stats00:01 8.5Mb 100.0% Word stats
00:01 8.5Mb 100.0% Alloc rows
00:01 13Mb 0.1% Build index00:01 13Mb 100.0% Build index
00:01 46Mb 0.1% Searching, 0.0% matched00:02 453Mb 13.5% Searching, 66.7% matched00:03 736Mb 25.9% Searching, 66.5% matched00:04 1.2Gb 34.6% Searching, 66.4% matched00:05 1.2Gb 46.1% Searching, 66.3% matched00:06 1.2Gb 57.7% Searching, 66.1% matched00:07 1.2Gb 69.4% Searching, 65.9% matched00:08 2.2Gb 78.2% Searching, 65.7% matched00:09 2.2Gb 92.3% Searching, 65.2% matched00:09 2.2Gb 100.0% Searching, 64.7% matched
114509 / 177148 mapped to OTUs (64.6%)
00:09 2.2Gb Writing otu_table.txt
00:09 2.2Gb Writing otu_table.txt ...done.
slurmstepd: error: Exceeded step memory limit at some point.
###############################################################################
Peregrine Cluster
Job 10705943 for user 'p278113'
Finished at: Wed Jan 25 13:37:45 CET 2017
Job details:
============
Name : project_EX
User : p278113
Partition : gpu
Nodes : pg-gpu05
Cores : 12
State : COMPLETED
Submit : 2017-01-25T13:37:11
Start : 2017-01-25T13:37:12
End : 2017-01-25T13:37:48
Reserved walltime : 10:00:00
Used walltime : 00:00:36
Used CPU time : 00:01:44 (efficiency: 24.15%)
% User (Computation): 97.78%
% System (I/O) : 2.22%
Mem reserved : 2G/node
Max Mem used : 1.55G (pg-gpu05)
Max Disk Write : 393.25M (pg-gpu05)
Max Disk Read : 212.02M (pg-gpu05)
Acknowledgements:
=================
Please see this page if you want to acknowledge Peregrine in your publications:
https://redmine.hpc.rug.nl/redmine/projects/peregrine/wiki/ScientificOutput
################################################################################