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hc_init.c
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hc_init.c
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#include "hc.h"
/*
general routines dealing with the hager & Connell implementation
$Id: hc_init.c,v 1.14 2006/03/21 08:07:18 becker Exp becker $
*/
/*
initialize the basic operational modes
*/
void hc_init_parameters(struct hc_parameters *p)
{
/*
operational modes and parameters
*/
p->compressible = FALSE; /* compressibility following Panasyuk
& Steinberger */
/* surface mechanical boundary condition */
p->free_slip = TRUE; /* free slip? */
p->no_slip = FALSE; /* no slip boundary condition? */
p->platebc = FALSE; /* plate velocities? */
p->compute_geoid = 1; /* compute the geoid? 1: surface 2: all layers */
p->dens_anom_scale = HC_D_LOG_V_D_LOG_D ; /* default density anomaly scaling to
go from PREM percent traveltime
anomalies to density anomalies */
p->scale_dens_anom_with_prem = TRUE; /* scale the input file
relative density anomalies
with the absolute rho value
of PREM at that layer. if
set to FALSE, will use the
average rho value */
p->read_short_dens_sh = FALSE; /* read the density anomaly file in
the short format of Becker &
Boschi (2002)? */
p->read_short_pvel_sh = FALSE; /* read the plate velocities in short format */
p->verbose = 0; /* debugging output? (0,1,2,3,4...) */
p->sol_binary_out = TRUE; /* binary or ASCII output of SH expansion */
p->solution_mode = HC_VEL; /* default: velocity output */
p->print_density_field = TRUE; /* print the scaled density field (useful for debugging) */
p->print_kernel_only = FALSE;
p->solver_mode = HC_SOLVER_MODE_DEFAULT ;
p->print_pt_sol = FALSE;
p->print_spatial = FALSE; /* by default, only print the spectral solution */
/* for four layer approaches */
p->rlayer[0] = HC_ND_RADIUS(660);
p->rlayer[1] = HC_ND_RADIUS(410);
p->rlayer[2] = HC_ND_RADIUS(100);
/* default viscosities for the four layers, in units of reference viscosity*/
p->elayer[0] = 50.; p->elayer[1] = 1.; p->elayer[2] = 0.1; p->elayer[3] = 50.;
p->visc_init_mode = HC_INIT_E_FROM_FILE; /* by default, read viscosity from file */
p->solver_kludge_l = INT_MAX; /* default: no solver tricks */
p->remove_nr = FALSE; /* by default, leave NR in for plate motion models */
/*
depth dependent scaling of density files?
*/
p->dd_dens_scale = HC_DD_CONSTANT; /* can be HC_DD_CONSTANT, HC_DD_READ_FROM_FILE, HC_DD_POLYNOMIAL */
p->ndf = 0;
p->rdf = p->sdf = NULL;
/* plate velocities */
p->pvel_mode = HC_INIT_P_FROM_FILE; /* default is single plate velocity */
p->pvel_time = -1;
/*
viscosity scan stuff
*/
p->vscan_n = 2; /* between 2 and HC_VSCAN_NLAYER_MAX */
p->vscan_dv = HC_VSCAN_DV0;
p->vscan_em = HC_VSCAN_VMAX;
p->vscan_rlv = FALSE;
/*
filenames
*/
strncpy(p->visc_filename,HC_VISC_FILE,HC_CHAR_LENGTH);
strncpy(p->dens_filename,HC_DENS_SH_FILE,HC_CHAR_LENGTH);
strncpy(p->prem_model_filename,PREM_MODEL_FILE,HC_CHAR_LENGTH);
strncpy(p->ref_geoid_file, HC_GEOID_REF_FILE,HC_CHAR_LENGTH);
strncpy(p->ref_dtopo_file, HC_DTOPO_REF_FILE,HC_CHAR_LENGTH);
}
/*
first, call this routine with a blank **hc
*/
void
hc_struc_init (hc)
struct hcs **hc;
{
/* this will take care of all flags and such */
*hc = (struct hcs *)calloc(1,sizeof(struct hcs ));
if(!(*hc))
HC_MEMERROR("hc_struc_init: hc");
/* just to be sure */
(*hc)->initialized = (*hc)->const_init = (*hc)->visc_init =
(*hc)->dens_init = (*hc)->pvel_init = (*hc)->orig_danom_saved = FALSE;
hc_init_polsol_struct(&((*hc)->psp));
/*
assign NULL pointers to allow reallocating
*/
(*hc)->r = (*hc)->visc = (*hc)->rvisc =
(*hc)->dfact = (*hc)->rden = (*hc)->dvisc = NULL;
(*hc)->rpb = (*hc)->fpb= NULL;
(*hc)->dens_anom = NULL; /* expansions */
(*hc)->plm = NULL;
(*hc)->prem_init = FALSE;
}
void
hc_init_polsol_struct (psp)
struct hc_ps *psp;
{
psp->ncalled = 0;
/* scaling factors will only be computed once */
psp->rho_scale = 1.0;
psp->rho_init = FALSE;
psp->prop_params_init = FALSE; /* parameters for propagator computation */
psp->abg_init = FALSE; /* alpha, beta factors */
psp->prop_mats_init = FALSE; /* will be true only if save_prop_mats is */
psp->tor_init = psp->pol_init = FALSE;
psp->solver_kludge_l = INT_MAX; /* every l > psp->solver_kludge_l will
have modified core boundary
conditions */
}
/*
initialize all variables, after initializing the parameters
INPUT: sh_type: type of expansion storage/spherical haronics scheme to use
INPUT: hc_parameters: holds all the settings
OUTPUT: hc structure, gets modified
*/
void hc_init_main (hc, sh_type, p)
struct hcs *hc;
int sh_type;
struct hc_parameters *p;
{
int dummy=0;
HC_PREC dd_dummy[4]={1,1,1,1};
/* mechanical boundary condition */
if(p->free_slip){
if(p->no_slip || p->platebc)
HC_ERROR("hc_init_main","free slip and no slip does not make sense");
hc->free_slip = TRUE;
}
/*
set the default expansion type, input expansions will be
converted
*/
hc->sh_type = sh_type;
/*
start by reading in physical constants and PREM model
*/
hc_init_constants(hc,p->dens_anom_scale,p->prem_model_filename,p->verbose);
/*
initialize viscosity structure from file
*/
hc_assign_viscosity(hc,p->visc_init_mode,p->elayer,p);
if(!p->print_kernel_only){
/*
initialize possible depth dependent scaling of density model
*/
hc_assign_dd_scaling(HC_INIT_DD_FROM_FILE,dd_dummy,p,hc->r_cmb);
if(p->verbose)
switch(p->dd_dens_scale){
case HC_DD_CONSTANT:
fprintf(stderr,"hc_init_main: using constant dln\\rho/dln input density scaling of %g\n",
(double)hc->dens_scale);
break;
case HC_DD_READ_FROM_FILE:
fprintf(stderr,"hc_init_main: reading density scaling from file\n");
break;
case HC_DD_POLYNOMIAL:
fprintf(stderr,"hc_init_main: using polynomial density scaling (NOT IMPLEMENTED YET)\n");
exit(-1);
break;
default:
fprintf(stderr,"hc_init_main: error, dd mode %i undefined\n",
p->dd_dens_scale);
exit(-1);
}
}else{
fprintf(stderr,"hc_init_main: no density properties read, printing kernels only\n");
}
if(p->no_slip && (!p->platebc)){
/*
no slip (zero velocity) surface boundary conditions
*/
if(p->free_slip)
HC_ERROR("hc_init","no slip and free_slip doesn't make sense");
if(p->verbose)
fprintf(stderr,"hc_init: initializing for no slip\n");
/*
read in the densities first to determine L from the density expansion
*/
hc_assign_density(hc,p,HC_INIT_D_FROM_FILE,
p->dens_filename,-1,FALSE,FALSE,
(p->solver_mode == HC_SOLVER_MODE_VISC_SCAN)?(TRUE):(FALSE));
/*
assign all zeroes up to the lmax of the density expansion
*/
hc_assign_plate_velocities(hc,p->pvel_mode,p->pvel_filename,TRUE,hc->dens_anom[0].lmax,
FALSE,p->read_short_pvel_sh,p->remove_nr,p->verbose);
}else if(p->platebc){
/*
surface velocities
*/
if(p->free_slip)
HC_ERROR("hc_init","plate boundary condition and free_slip doesn't make sense");
if(p->verbose)
fprintf(stderr,"hc_init: initializing for surface velocities\n");
/*
read in velocities, which will determine the solution lmax
*/
hc_assign_plate_velocities(hc,HC_INIT_P_FROM_FILE,p->pvel_filename,FALSE,dummy,FALSE,
p->read_short_pvel_sh,p->remove_nr,p->verbose);
/* then read in the density anomalies */
hc_assign_density(hc,p,HC_INIT_D_FROM_FILE,p->dens_filename,hc->pvel.p[0].lmax,
FALSE,FALSE,
(p->solver_mode == HC_SOLVER_MODE_VISC_SCAN)?(TRUE):(FALSE));
}else if(p->free_slip){
/*
free slip
*/
if(p->no_slip)
HC_ERROR("hc_init","no slip and free slip does not make sense");
if(p->verbose)
fprintf(stderr,"hc_init: initializing for free-slip\n");
/* read in the density fields */
hc_assign_density(hc,p,HC_INIT_D_FROM_FILE,p->dens_filename,-1,FALSE,FALSE,
(p->solver_mode == HC_SOLVER_MODE_VISC_SCAN)?(TRUE):(FALSE));
}else{
HC_ERROR("hc_init","boundary condition logic error");
}
/* solver tricks */
hc->psp.solver_kludge_l = p->solver_kludge_l;
if(hc->psp.solver_kludge_l != INT_MAX)
if(p->verbose)
fprintf(stderr,"hc_init_main: WARNING: applying solver CMB kludge for l > %i\n",hc->psp.solver_kludge_l);
/*
phase boundaries, if any
*/
hc_init_phase_boundaries(hc,0,p->verbose);
/* */
hc->save_solution = TRUE; /* (don')t save the propagator
matrices in hc_polsol and the
poloidal/toroidal solutions
*/
hc->initialized = TRUE;
}
/*
some of those numbers might be a bit funny, but leave them like
this for now for backward compatibility.
*/
void
hc_init_constants (hc, dens_anom_scale, prem_filename, verbose)
struct hcs *hc;
HC_PREC dens_anom_scale;
char *prem_filename;
hc_boolean verbose;
{
int ec;
if(hc->const_init)
HC_ERROR("hc_init_constants","why would you call this routine twice?")
if(!hc->prem_init){
/* PREM constants */
if((ec=prem_read_model(prem_filename,hc->prem,verbose))){
fprintf(stderr,"hc_init_constants: error: could not init PREM, error code: %i\n",
ec);
exit(-1);
}
hc->prem_init = TRUE;
}
/*
density scale
*/
hc->dens_scale = dens_anom_scale;
/*
constants
*/
hc->timesc = HC_TIMESCALE_YR; /* timescale [yr], like 1e6 yrs */
hc->visnor = HC_VISNOR; /* normalizing viscosity [Pas]*/
hc->gacc = HC_GACC; /* gravitational acceleration [cm/s2]*/
hc->g = HC_CAPITAL_G; /* gravitational constant [Nm2/kg2]*/
/*
radius of Earth in [m]
*/
hc->re = hc->prem->r0;
if(fabs(hc->re - (HC_RE_KM * 1e3)) > 1e-7){
fprintf(stderr,"%.7e %.7e\n",(double)(HC_RE_KM * 1e3),(double)hc->re);
HC_ERROR("hc_init_constants","Earth radius mismatch");
}
hc->secyr = HC_SECYR; /* seconds/year */
/*
those are in g/cm^3
*/
hc->avg_den_mantle = HC_AVG_DEN_MANTLE;
hc->avg_den_core = HC_AVG_DEN_CORE;
/*
take the CMB radius from the Earth model
*/
hc->r_cmb = hc->prem->r[1];
if(fabs(hc->r_cmb - 0.55) > 0.02)
HC_ERROR("hc_init_constants","Earth model CMB radius appears off");
/*
derived quantities
*/
/*
velocity scale if input is in [cm/yr], works out to be ~0.11
*/
hc->vel_scale = hc->re*PIOVERONEEIGHTY/hc->timesc/HC_VEL_IO_SCALE;
/*
stress scaling, will later be divided by non-dim radius, to go
to MPa
*/
hc->stress_scale = (PIOVERONEEIGHTY * hc->visnor / hc->secyr)/
(hc->timesc * HC_TIMESCALE_YR);
hc->const_init = TRUE;
}
/*
handle command line parameters
visc_filename[] needs to be [HC_CHAR_LENGTH]
*/
void
hc_handle_command_line (argc, argv, start_from_i, p)
int argc;
char **argv;
int start_from_i;
struct hc_parameters *p;
{
int i,itmp;
hc_boolean used_parameter;
HC_PREC tmp;
for(i=start_from_i;i < argc;i++){
used_parameter = FALSE; /* */
if((p->solver_mode == HC_SOLVER_MODE_VISC_SCAN && argc < 2) || /* need
one
or
two
arguments
for
some
of
the
other
modes */
(p->solver_mode == HC_SOLVER_MODE_DYNTOPO_INVERT && argc < 3) ||
(strcmp(argv[i],"-help")==0) ||
(strcmp(argv[i],"--help")==0) ||
(strcmp(argv[i],"-h")==0) ||
(strcmp(argv[i],"-?")==0)){// help
/*
help page
*/
fprintf(stderr,"%s - perform Hager & O'Connell flow computation\n\n",
argv[0]);
fprintf(stderr,"This code can compute velocities, tractions, and geoid for simple density distributions\n");
fprintf(stderr,"and plate velocities using the semi-analytical approach of Hager & O'Connell (1981).\n");
fprintf(stderr,"This particular implementation illustrates one possible way to combine the HC solver routines.\n");
fprintf(stderr,"Based on code by Brad Hager, Richard O'Connell, and Bernhard Steinberger.\n");
fprintf(stderr,"This version by Thorsten Becker, with contributions by Craig O'Neill.\n");
fprintf(stderr,"compiled with %s precision ((c) 2023, see README.TXT)\n",(HC_PRECISION==16)?("double"):((HC_PRECISION==8)?"single":"quad"));
switch(p->solver_mode){
case HC_SOLVER_MODE_VISC_SCAN:
fprintf(stderr,"usage example:\n\n");
fprintf(stderr,"bin/hc_visc_scan geoid.ab\n\n");
fprintf(stderr,"Scan through viscosity values and compute correlation with the geoid in geoid.ab\n\n");
break;
case HC_SOLVER_MODE_DYNTOPO_INVERT:
fprintf(stderr,"usage example:\n\n");
fprintf(stderr,"bin/hc_invert_dtopo geoid.ab dtopo.ab\n\n");
fprintf(stderr,"Invert for density anomalies based on geoid in geoid.ab and res topo wrt to air in dtopo.ab\n\n");
break;
default:
fprintf(stderr,"usage example:\n\n");
fprintf(stderr,"bin/hc -vvv\n\n");
fprintf(stderr,"Compute mantle flow solution using the default input files:\n");
fprintf(stderr," viscosity profile visc.dat\n");
fprintf(stderr," density profile dens.sh.dat\n");
fprintf(stderr," earth model prem/prem.dat\n");
fprintf(stderr,"and provide lots of output. Default setting is quiet operation.\n\n");
break;
}
fprintf(stderr,"See README.TXT in the installation directory for example for how to plot output, and\n");
fprintf(stderr,"http://http://www-udc.ig.utexas.edu/external/becker/seatree/ for a graphical user interface.\n");
fprintf(stderr,"https://goo.gl/D4E8oy for a VirtualBox install.\n\n");
fprintf(stderr,"density anomaly options:\n");
fprintf(stderr,"-dens\tname\tuse name as a SH density anomaly model (%s)\n",
p->dens_filename);
fprintf(stderr,"\t\tAll density anomalies are in units of %g%% of PREM, all SH coefficients\n\t\tin Dahlen & Tromp convention.\n",
HC_DENSITY_SCALING*100);
fprintf(stderr,"-dshs\t\tuse the short, Becker & Boschi (2002) format for the SH density model (%s)\n",
hc_name_boolean(p->read_short_dens_sh));
fprintf(stderr,"-ds\tval\tdensity scaling factor (%g)\n",
(double)p->dens_anom_scale);
fprintf(stderr,"-dnp\t\tdo not scale density anomalies with PREM but rather mean density (%s)\n",
hc_name_boolean(!p->scale_dens_anom_with_prem));
fprintf(stderr,"-dsf\tfile\tread depth dependent density scaling from file\n");
fprintf(stderr,"\t\t(overrides -ds, %s), use pdens.py to edit\n\n",
hc_name_boolean((p->dd_dens_scale == HC_DD_READ_FROM_FILE)));
//fprintf(stderr,"-dsp\t\tuse polynomial density scaling (overrides -ds, clashes with -dsf, %s)\n\n",
//hc_name_boolean((p->dd_dens_scale == HC_DD_POLYNOMIAL)));
fprintf(stderr,"Earth model options:\n");
fprintf(stderr,"-prem\tname\tset Earth model to name (%s)\n",
p->prem_model_filename);
if((p->solver_mode == HC_SOLVER_MODE_VISC_SCAN)||
(p->solver_mode == HC_SOLVER_MODE_DYNTOPO_INVERT)){
fprintf(stderr,"\t\tWARNING: Will loop through a four layer viscosity scan\nscan options:\n");
fprintf(stderr,"-gref\tname\tuse filename for reference geoid (%s)\n",
p->ref_geoid_file);
fprintf(stderr,"-vs_n\tn\tuse n layers out of %i for viscosity scane (%i)\n",
HC_VSCAN_NLAYER_MAX,p->vscan_n);
fprintf(stderr,"-vs_r\t\trestrict v[%i] to expected relative layer strength (%i)\n",
HC_VSCAN_NLAYER_MAX,p->vscan_rlv);
fprintf(stderr,"-vs_dv\tval\tuse val spacing in log space for viscosity scan (%g)\n",
(double)p->vscan_dv);
fprintf(stderr,"-vs_em\tval\tuse 10^{+/-vs_em} as bounds for scan (%g)\n",
(double)p->vscan_em);
fprintf(stderr,"-vs_zlm\tdepth\tuse depth[km] for the upper/lower mantle boundary (%g)\n",
(double)HC_Z_DEPTH(p->rlayer[0]));
fprintf(stderr,"-vs_zau\tdepth\tuse depth[km] for the asthenosphere/upper mantle boundary (%g)\n",
(double)HC_Z_DEPTH(p->rlayer[1]));
if(p->solver_mode == HC_SOLVER_MODE_DYNTOPO_INVERT)
fprintf(stderr,"-dtref\tname\tuse filename for reference dynamic topography (%s)\n",
p->ref_dtopo_file);
}else{
fprintf(stderr,"-vf\tname\tviscosity structure filename (%s), use pvisc.py to edit\n",
p->visc_filename);
fprintf(stderr,"\t\tThis file is in non_dim_radius viscosity[Pas] format\n");
}
fprintf(stderr,"\nboundary condition options:\n");
fprintf(stderr,"-fs\t\tperform free slip computation (%s)\n",hc_name_boolean(p->free_slip));
fprintf(stderr,"-ns\t\tperform no slip computation (%s)\n",hc_name_boolean(p->no_slip));
fprintf(stderr,"-pvel\tname\tset prescribed surface velocities from file name (%s)\n",
hc_name_boolean(p->platebc));
fprintf(stderr,"\t\tThe file (e.g. %s) is based on a DT expansion of cm/yr velocity fields.\n",HC_PVEL_FILE);
fprintf(stderr,"-vshs\t\tuse the short format (only lmax in header) for the plate velocities (%s)\n",
hc_name_boolean(p->read_short_pvel_sh));
fprintf(stderr,"-rnr\t\tremove any net rotation component from the plate velocities (%s)\n",
hc_name_boolean(p->remove_nr));
fprintf(stderr,"-vdir\t\tvelocities are given in files name/vel.1.ab to vel.%i.ab for different times,\n\t\t-%g to -1 Ma before present, where name is from -pvel\n",
HC_PVEL_TSTEPS,(double)HC_PVEL_TSTEPS);
fprintf(stderr,"-vtime\ttime\tuse this particular time step of the plate velocities (%g)\n\n",
(double)p->pvel_time);
fprintf(stderr,"solution procedure and I/O options:\n");
fprintf(stderr,"-cbckl\tval\twill modify CMB boundary condition for all l > val with solver kludge (%i)\n",
p->solver_kludge_l);
if(p->solver_mode == HC_SOLVER_MODE_DEFAULT){
/* these only apply to the regular mode */
fprintf(stderr,"-ng\t\tdo not compute and print the geoid (%i)\n",
p->compute_geoid);
fprintf(stderr,"-ag\t\tcompute geoid at all layer depths, as opposed to the surface only\n");
fprintf(stderr,"-pptsol\t\tprint pol[6] and tor[2] solution vectors (%s)\n",
hc_name_boolean(p->print_pt_sol));
fprintf(stderr,"-px\t\tprint the spatial solution to file (%s)\n",
hc_name_boolean(p->print_spatial));
fprintf(stderr,"-rtrac\t\tcompute srr,srt,srp tractions [MPa] instead of velocities [cm/yr] (default: vel)\n");
fprintf(stderr,"-htrac\t\tcompute stt,stp,spp tractions [MPa] instead of velocities [cm/yr] (default: vel)\n");
fprintf(stderr,"-pk\t\tprint kernels only, up to default L = %i\n",HC_LMAX_DEFAULT);
}
fprintf(stderr,"-v\t-vv\t-vvv: verbosity levels (%i)\n",
(int)(p->verbose));
fprintf(stderr,"\n\n");
exit(-1);
}else if(strcmp(argv[i],"-ds")==0){ /* density anomaly scaling factor */
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&p->dens_anom_scale);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vs_n")==0){
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],"%i",&p->vscan_n); /* allow for negative values
to scan upper/lower mantle
boundary */
/* */
itmp = abs(p->vscan_n);
if((itmp < 2) || (itmp > HC_VSCAN_NLAYER_MAX)){
fprintf(stderr,"hc_init: error, vscan layer %i out of bounds, max is %i\n",
p->vscan_n,HC_VSCAN_NLAYER_MAX);
exit(-1);
}
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vs_dv")==0){
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&p->vscan_dv);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vs_zlm")==0){
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&tmp);
p->rlayer[0] = HC_ND_RADIUS(tmp);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vs_em")==0){
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&p->vscan_em);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vs_r")==0){
hc_toggle_boolean(&p->vscan_rlv);
used_parameter = TRUE;
if(p->verbose)
fprintf(stderr,"hc_init: WARNING: restricting viscosity scan\n");
}else if(strcmp(argv[i],"-vs_zau")==0){
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&tmp);
p->rlayer[1] = HC_ND_RADIUS(tmp);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-cbckl")==0){ /* solver kludge */
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],"%i",&p->solver_kludge_l);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vtime")==0){ /* */
hc_advance_argument(&i,argc,argv);
sscanf(argv[i],HC_FLT_FORMAT,&p->pvel_time);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-fs")==0){ /* free slip flag */
p->free_slip = TRUE;p->no_slip = FALSE;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-ns")==0){ /* no slip flag */
p->no_slip = TRUE;p->free_slip = FALSE;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-pk")==0){
p->print_kernel_only = TRUE;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dshs")==0){ /* use short format for densities ? */
hc_toggle_boolean(&p->read_short_dens_sh);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vshs")==0){ /* use short format for velocities? */
hc_toggle_boolean(&p->read_short_pvel_sh);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-prem")==0){ /* PREM filename */
hc_advance_argument(&i,argc,argv);
strncpy(p->prem_model_filename,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dnp")==0){
hc_toggle_boolean(&p->scale_dens_anom_with_prem);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-rnr")==0){
hc_toggle_boolean(&p->remove_nr);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-pvel")==0){ /* velocity filename, this will switch off free slip */
hc_advance_argument(&i,argc,argv);
strncpy(p->pvel_filename,argv[i],HC_CHAR_LENGTH);
p->platebc = TRUE;p->no_slip = TRUE;p->free_slip = FALSE;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dens")==0){ /* density filename */
hc_advance_argument(&i,argc,argv);
strncpy(p->dens_filename,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dsf")==0){ /* density scaling filename */
p->dd_dens_scale = HC_DD_READ_FROM_FILE;
hc_advance_argument(&i,argc,argv);
strncpy(p->dens_scaling_filename,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dsp")==0){
p->dd_dens_scale = HC_DD_POLYNOMIAL;
hc_advance_argument(&i,argc,argv);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-gref")==0){ /* geoid reference */
hc_advance_argument(&i,argc,argv);
strncpy(p->ref_geoid_file,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-dtref")==0){ /* dyn topo reference */
hc_advance_argument(&i,argc,argv);
strncpy(p->ref_dtopo_file,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vf")==0){ /* viscosity filename */
hc_advance_argument(&i,argc,argv);
strncpy(p->visc_filename,argv[i],HC_CHAR_LENGTH);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vdir")==0){ /* velocities in dir */
p->pvel_mode = HC_INIT_P_FROM_DIRECTORY;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-v")==0){ /* verbosities */
p->verbose = 1;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vv")==0){ /* verbosities */
p->verbose = 2;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-vvv")==0){
p->verbose = 3;
used_parameter = TRUE;
}
if(p->solver_mode == HC_SOLVER_MODE_DEFAULT){
/*
those subsequent options only apply for default solver
mode
*/
if(strcmp(argv[i],"-px")==0){ /* print spatial solution? */
hc_toggle_boolean(&p->print_spatial);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-pptsol")==0){ /* print
poloidal/toroidal
solution
parameters */
hc_toggle_boolean(&p->print_pt_sol);
used_parameter = TRUE;
}else if(strcmp(argv[i],"-ng")==0){ /* do not compute geoid */
p->compute_geoid = 0;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-ag")==0){ /* compute geoid at all layers */
p->compute_geoid = 2;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-rtrac")==0){ /* compute radial
tractions */
p->solution_mode = HC_RTRACTIONS;
used_parameter = TRUE;
}else if(strcmp(argv[i],"-htrac")==0){ /* compute horizontal
tractions */
p->solution_mode = HC_HTRACTIONS;
used_parameter = TRUE;
}
} /* end default operation mode branch */
if(!used_parameter){
fprintf(stderr,"%s: can not use parameter %s, use -h for help page\n",
argv[0],argv[i]);
exit(-1);
}
}
if(p->print_kernel_only){ /* make room to store kernels */
fprintf(stderr,"%s: print kernel overriding geoid settings\n",argv[0]);
p->compute_geoid = 2;
}
if((p->solver_mode == HC_SOLVER_MODE_VISC_SCAN) ||
(p->solver_mode == HC_SOLVER_MODE_DYNTOPO_INVERT)){
/* we need a reference geoid */
hc_read_scalar_shexp(p->ref_geoid_file,&(p->ref_geoid),"reference geoid",p);
}
if(p->solver_mode == HC_SOLVER_MODE_DYNTOPO_INVERT){
/* we need a reference dynamic topography */
hc_read_scalar_shexp(p->ref_dtopo_file,&(p->ref_dtopo),
"reference dynamic topography",p);
}
}
/*
assign viscosity structure
mode == 0
read in a viscosity structure with layers of constant viscosity in
format
r visc
where r is non-dim radius and visc non-dim viscosity, r has to be
ascending
*/
void
hc_assign_viscosity (hc, mode, elayer, p)
struct hcs *hc;
int mode;
HC_PREC elayer[4];
struct hc_parameters *p;
{
FILE *in;
int i;
char fstring[HC_CHAR_LENGTH+1];
HC_PREC mean,mweight,rold,mws;
switch(mode){
case HC_INIT_E_FOUR_LAYERS:
/* initialize a four layer viscosity structure, viscosity values
for 2871-660, 660-410, 410-100,100-0 should be given in units
of visnor [1e21] as elayer[4]
*/
hc_vecrealloc(&hc->rvisc,4,"hc_assign_viscosity");
hc_vecrealloc(&hc->visc,4,"hc_assign_viscosity");
/* number of layers */
hc->nvis = 4;
/* radii */
hc->rvisc[0] = hc->r_cmb;
hc->rvisc[1] = p->rlayer[0];
hc->rvisc[2] = p->rlayer[1];
hc->rvisc[3] = p->rlayer[2];
for(i=0;i < hc->nvis;i++){
hc->visc[i] = elayer[i];
//fprintf(stderr,"%11g %11g\n",hc->rvisc[i],hc->visc[i]);
}
if(p->verbose)
fprintf(stderr,"hc_assign_viscosity: assigned four layer viscosity: %.2e %.2e %.2e %.2e\n",
(double)hc->visc[0],(double)hc->visc[1],
(double)hc->visc[2],(double)hc->visc[3]);
break;
case HC_INIT_E_FROM_FILE:
/*
init from file part
*/
if(hc->visc_init)
HC_ERROR("hc_assign_viscosity","viscosity already read from file, really read again?");
/*
read viscosity structure from file
format:
r[non-dim] visc[non-dim]
from bottom to top
*/
in = hc_fopen(p->visc_filename,"r","hc_assign_viscosity",p->main_program_name);
hc_vecrealloc(&hc->rvisc,1,"hc_assign_viscosity");
hc_vecrealloc(&hc->visc,1,"hc_assign_viscosity");
hc->nvis = 0;mean = 0.0;mws = 0.0;
/* read sscanf string */
hc_get_flt_frmt_string(fstring,2,FALSE);
rold = hc->r_cmb;
/* start read loop */
while(fscanf(in,HC_TWO_FLT_FORMAT,
(hc->rvisc+hc->nvis),(hc->visc+hc->nvis))==2){
if(hc->visc[hc->nvis] < 1e15)
fprintf(stderr,"hc_assign_viscosity: WARNING: expecting viscosities in Pas, read %g at layer %i\n",
(double)hc->visc[hc->nvis],hc->nvis);
/* normalize viscosity here */
hc->visc[hc->nvis] /= hc->visnor;
if(hc->nvis == 0)
if( hc->rvisc[hc->nvis] < hc->r_cmb-0.01){
fprintf(stderr,"hc_assign_viscosity: error: first radius %g is below CMB, %g\n",
(double)hc->rvisc[hc->nvis], (double)hc->r_cmb);
exit(-1);
}
if(p->verbose){
/* weighted mean, should use volume, really, but this is just
for information */
mweight = ( hc->rvisc[hc->nvis] - rold);
mws += mweight;
rold = hc->rvisc[hc->nvis];
mean += log(hc->visc[hc->nvis]) * mweight;
}
if(hc->nvis){
if(hc->rvisc[hc->nvis] < hc->rvisc[hc->nvis-1]){
fprintf(stderr,"hc_assign_viscosity: error: radius has to be ascing, entry %i (%g) smaller than last (%g)\n",
hc->nvis+1,(double)hc->rvisc[hc->nvis],
(double)hc->rvisc[hc->nvis-1]);
exit(-1);
}
}
hc->nvis++;
hc_vecrealloc(&hc->rvisc,hc->nvis+1,"hc_assign_viscosity");
hc_vecrealloc(&hc->visc,hc->nvis+1,"hc_assign_viscosity");
}
fclose(in);
if(hc->rvisc[hc->nvis-1] > 1.0){
fprintf(stderr,"hc_assign_viscosity: error: first last %g is above surface, 1.0\n",
(double)hc->rvisc[hc->nvis-1]);
exit(-1);
}
if(p->verbose){
/* last entry */
mweight = ( 1.0 - hc->rvisc[hc->nvis-1]);
mws += mweight;
rold = hc->rvisc[hc->nvis-1];
mean += log(hc->visc[hc->nvis-1]) * mweight;
mean = exp(mean/mws);
fprintf(stderr,"hc_assign_viscosity: read %i layered viscosity[Pas] from %s\n",
hc->nvis,p->visc_filename);
fprintf(stderr,"hc_assign_viscosity: rough estimate of mean viscosity: %g x %g = %g Pas\n",
(double)mean, (double)hc->visnor, (double)(mean*hc->visnor));
}
break;
default:
HC_ERROR("hc_assign_viscosity","mode undefined");
break;
}
hc->visc_init = TRUE;
}
/*
assign/initialize the density anomalies and density factors
if mode==0: expects spherical harmonics of density anomalies [%] with
respect to the 1-D reference model (PREM) given in SH
format on decreasing depth levels in [km]
spherical harmonics are real, fully normalized as in
Dahlen & Tromp p. 859
this routine assigns the inho density radii, and the total (nrad=inho)+2
radii
furthermore, the dfact factors are assigned as well
set density_in_binary to TRUE, if expansion given in binary
nominal_lmax: -1: the max order of the density expansion will either
determine the lmax of the solution (free-slip, or vel_bc_zero) or
will have to be the same as the plate expansion lmax (!free_slip && !vel_bc_zero)
else: will zero out all entries > nominal_lmax
*/
void hc_assign_density (hc, p, mode, filename,
nominal_lmax,
layer_structure_changed,
density_in_binary,
save_orig_danom)
struct hcs *hc;
struct hc_parameters *p;
int mode;
char *filename;
int nominal_lmax;
hc_boolean layer_structure_changed;
hc_boolean density_in_binary;
hc_boolean save_orig_danom;
{
FILE *in;
int type,lmax,shps,ilayer,nset,ivec,i,j;
HC_PREC *dtop,*dbot,zlabel,local_scale,dens_scale[1];
double rho0;
hc_boolean reported = FALSE,read_on;
HC_PREC dtmp[3];
hc->compressible = p->compressible;
hc->inho = 0;
if(hc->dens_init) /* clear old expansions, if
already initialized */
sh_free_expansion(hc->dens_anom,hc->inho);
/* get PREM model, if not initialized */
if(!hc->prem_init)
HC_ERROR("hc_assign_density","assign 1-D reference model (PREM) first");
switch(mode){
case HC_RESCALE_D:
/* resuse old density model, apply new scaling */
if(!hc->orig_danom_saved)
HC_ERROR("hc_assign_density","trying to rescale original density anomaly model, but it was not saved");
for(i=0;i<hc->inho;i++){
sh_aexp_equals_bexp_coeff((hc->dens_anom+i),
(hc->dens_anom_orig+i));
}
break;
case HC_INIT_D_FROM_FILE:
if(hc->dens_init)
HC_ERROR("hc_assign_density","really read dens anomalies again from file?");
/*
read in density anomalies in spherical harmonics format for
different layers from file.
this assumes that we are reading in anomalies in percent
*/
in = hc_fopen(filename,"r","hc_assign_density",p->main_program_name);
if(p->verbose)
fprintf(stderr,"hc_assign_density: reading density anomalies in [%g%%] from %s\n",
100*HC_DENSITY_SCALING,filename);
hc->inho = 0; /* counter for density layers */
/* get one density expansion */
hc_get_blank_expansions(&hc->dens_anom,1,0,
"hc_assign_density");
/*
read all layers as spherical harmonics assuming real Dahlen &
Tromp (physical) normalization, short format
*/
if(p->read_short_dens_sh){
if(p->verbose)
fprintf(stderr,"hc_assign_density: using short format for density SH\n");
if(fscanf(in,"%i",&nset) != 1)
HC_ERROR("hc_assign_density","code read error");
ilayer = -1;
}else{
if(p->verbose)
fprintf(stderr,"hc_assign_density: using default SH format for density\n");
}
read_on = TRUE;
while(read_on){
if(p->read_short_dens_sh){
/* short format I/O */
i = fscanf(in,HC_FLT_FORMAT,dtmp);zlabel = (HC_PREC)dtmp[0];
i += fscanf(in,"%i",&lmax);
read_on = (i == 2)?(TRUE):(FALSE);
ivec = 0;shps = 1;type = HC_DEFAULT_INTERNAL_FORMAT;
ilayer++;
}else{
read_on = sh_read_parameters_from_stream(&type,&lmax,&shps,&ilayer, &nset,
&zlabel,&ivec,in,FALSE,density_in_binary,
p->verbose);
}
if(read_on){
if((p->verbose)&&(!reported)){
if(nominal_lmax > lmax)
fprintf(stderr,"hc_assign_density: density lmax: %3i filling up to nominal lmax: %3i with zeroes\n",
lmax,nominal_lmax);
if(nominal_lmax != -1){
fprintf(stderr,"hc_assign_density: density lmax: %3i limiting to lmax: %3i\n",
lmax,nominal_lmax);
}else{
fprintf(stderr,"hc_assign_density: density lmax: %3i determines solution lmax\n",
lmax);
}
reported = TRUE;
if(p->verbose >= 2)
fprintf(stderr,"hc_assign_density: non_dim radius %% factor PREM \\rho/mean_rho layer # depth[km] rho[kg/m^3]\n");
}
/*
do tests
*/
if((shps != 1)||(ivec))
HC_ERROR("hc_assign_density","vector field read in but only scalar expansion expected");
/* test and assign depth levels */
hc->rden=(HC_PREC *)
realloc(hc->rden,(1+hc->inho)*sizeof(HC_PREC));
if(!hc->rden)
HC_MEMERROR("hc_assign_density: rden");
/*
assign depth, this assumes that we are reading in depths [km]
*/
hc->rden[hc->inho] = HC_ND_RADIUS((HC_PREC)zlabel);
if(p->scale_dens_anom_with_prem){
/*
get reference density at this level
*/
prem_get_rho(&rho0,(double)(hc->rden[hc->inho]),
hc->prem);
rho0 /= 1000.0;
if(rho0 < 3)
fprintf(stderr,"\nhc_assign_density: WARNING: using small (%g) density from PREM for layer at depth %g\n\n",
(double)rho0*1000,(double)HC_Z_DEPTH(hc->rden[hc->inho]));
}else{
/* mean value */
rho0 = (double)hc->avg_den_mantle;
}
/*