.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# old recruitment attempt
code/cod_recruitment.R

# opening .nc data (hubert's data)
code/open.nc_data_example_temperature.R

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# data folder
data/

# Rproject
Atlantic_cod.Rproj

#predation_figure
code/predation_figure.R

# Figures folder
Figures/

# RMarkdown folder
RMarkdown/

# Bycatch folder
Bycatch/

# presentations folder
presentations/

# making timeseries of raw data
code/ind_var_timeseries_plots.R

# paper pdf
Sugiharaetal.pdf

# friedland vs hubert
code/Friedland_vs_Hubert.R

# Stock surevy area overlap figure code
code/Stock_area_survey_overlap.R

Scheffer et al. 2009-changepoint.PDF
Spatio-Temporal Dynamics of Atlantic Cod Bycatch in the Maine Lob.pdf
Sugiharaetal-casuality.pdf