From 52433527dfeef42b405bb575c2f2785df07fb0e2 Mon Sep 17 00:00:00 2001
From: Thomas Buida <thomasbuida@gmail.com>
Date: Tue, 6 Feb 2024 17:03:47 -0600
Subject: [PATCH] Enable codon option in programmatic interface

---
 clipkit/api.py     | 4 ++--
 clipkit/version.py | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/clipkit/api.py b/clipkit/api.py
index d42506e..b877cac 100644
--- a/clipkit/api.py
+++ b/clipkit/api.py
@@ -18,7 +18,8 @@ def clipkit(
     gap_characters=None,
     input_file_format=FileFormat.fasta,
     output_file_format=FileFormat.fasta,
-    sequence_type=SeqType.aa
+    sequence_type=SeqType.aa,
+    codon=bool,
 ) -> TextIO:
     """
     If input_file_path is given with no output_file_path -> Bio MSA (multiple sequence alignment object)
@@ -39,7 +40,6 @@ def clipkit(
 
     # override some options not currently available through programmatic interface
     complement = False
-    codon = False
     use_log = False
     quiet = True
 
diff --git a/clipkit/version.py b/clipkit/version.py
index 4eabd0b..e835b9d 100644
--- a/clipkit/version.py
+++ b/clipkit/version.py
@@ -1 +1 @@
-__version__ = "2.1.2"
+__version__ = "2.1.3"