port annotation

[esraneufeld]

bold: done already
bold italic: to be done with priority

Port annotation

• Json-schema form descriptors (Syntax)
  • Str, integer, number, arrays, booleans
  • (time) series, fields… (Pandas?)
  • composite structures (tree)
  • Constraints
  • units
  • Links/pointers to data (50%)
  • Links/pointers to form descriptor
  • Mime type (50% done)
  • logical expressions (exist as far as supported by json schema natively)
• (Content descriptors (semantics; K-Core): its an electrophysiology trace)
• Use of descriptors
  • Unit conversion (automatic)
  • Check validity at connection-time and at run-time
  • launch simulation from portal
  • Propose workflow for data
  • Find data for workflow
  • Prefiltering or ordering of service catalog
  • Output form dynamically dependent on input form (evaluators)
  • partial prevalidation in GUI
  • Exposing (API-based) service and study ports
    • support Alan
      • ability to inject in some ports not data from the input form, but data from a stored model (e.g., cellml file)
      • some kind of logical expressions
• presentation
  • highlight failing values

Use case:

• mime type: expects dicom, dcm, jpg, png, or tif
• link to data and associated form descriptor:
  • colleen clancy input file
  • s4l cache file
• time series (as input and output): xxx
• simple example of basic types, constraints, and units: xxx

[pcrespov]

Update on sprint Diolkos

Done

• Meetings and support MAP-Core
  • M4.5.7 “High-level” simulation experiment editor to present an interface on the SPARC Portal for users to configure simulation/analyses to execute on oSPARC
• 📝 Adds rabbit ss1d example script for public-api [skip actions] osparc-simcore#3138
• UI
  • Port dropdown missing with array type parameter osparc-simcore#3061, create parameters for array type ports does not work as expected  osparc-simcore#3035
  • UI: A button to copy raw metadata from Service info osparc-simcore#3128
  • Contraints are not displayed with arrays osparc-simcore#3037

Ongoing

• Function services (w/ @elisabettai) New/simplify service creation pcrespov/osparc-function-services#2
  • service sample in neuro_demo_services.py

[pcrespov]

Update on sprint Brutalism

Done

• Meetings and support MAP-Core
  • M4.5.7 “High-level” simulation experiment editor to present an interface on the SPARC Portal for users to configure simulation/analyses to execute on oSPARC

[pcrespov]

Update on sprint Vaporwave

Done

• Meetings and support MAP-Core
  • Checked tutorials with CC
  • Inter-comparison of results between osparc UI tutorial and new portal viewer (see datasets 4 and 17 below)
  • Published updated datasets (4, 17 and 78) on Pennsieve
  • Details in M4.5.7 “High-level” simulation experiment editor to present an interface on the SPARC Portal for users to configure simulation/analyses to execute on oSPARC
    • Iteration with SIM Core re input/output

[elisabettai]

HI @pcrespov, can we consider this done? We have #686 that reflects work to be done, right?

[pcrespov]

HI @pcrespov, can we consider this done? We have #686 that reflects work to be done, right?

@elisabettai There are some details (see bold sentences in the description) that still not complete. With the function services ITISFoundation/osparc-simcore#3418 we can create an example of service that covers all the details and then we can close this.