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2D Stardist keeps crashing when Generating prediction(s) from unseen dataset #265

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GiuseppeCiccone96 opened this issue May 4, 2023 · 1 comment
Open

2D Stardist keeps crashing when Generating prediction(s) from unseen dataset #265

GiuseppeCiccone96 opened this issue May 4, 2023 · 1 comment

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@GiuseppeCiccone96
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GiuseppeCiccone96 commented May 4, 2023 •
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Describe the bug:

2D Stardist keeps crashing when Generating prediction(s) from unseen dataset. The unseen dataset is a stack of 301 images, each image is 16 bit and about 4MB.
Upon crashing, the suggestion is to upgrade to Colab pro to have more RAM.
Is there a solution to this, without having to upgrade and pay?

Desktop (please complete the following information):

  • OS: macOS Monterey 12.1
  • Browser: Safari
  • Version: 15.3

Thanks in advance,

Giuseppe
@guijacquemet
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Hi,

Can you divide your stack into smaller chunk(s)? So that the analysis fits into your available RAM?

Cheers

Guillaume

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@guijacquemet @GiuseppeCiccone96