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tool_list.yaml
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tool_list.yaml
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install_repository_dependencies: true
install_resolver_dependencies: false
install_tool_dependencies: false
tools:
- name: autodock_vina
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_box
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_ligand
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_receptor
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: cutadapt
owner: lparsons
tool_panel_section_label: Fastq Manipulation
- name: multiqc
owner: iuc
tool_panel_section_label: Fastq Manipulation
- name: fastqc
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: trimmomatic
owner: pjbriggs
tool_panel_section_label: Fastq Manipulation
- name: fastq_to_tabular
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: blast_rbh
owner: peterjc
tool_panel_section_label: Sequence Analysis
- name: chromeister
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: mafft
owner: rnateam
tool_panel_section_label: Sequence Analysis
- name: hmmer_jackhmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmsearch
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_phmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmbuild
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_nhmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_nhmmscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: t_coffee
owner: earlhaminst
tool_panel_section_label: Sequence Analysis
- name: gffread
owner: devteam
tool_panel_section_label: Sequence Analysis
- name: cd_hit
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: diamond
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: fastp
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_alimask
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmemit
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmconvert
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmfetch
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmalign
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: trim_galore
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: ucsc_blat
owner: yating-l
tool_panel_section_label: Sequence Analysis
- name: clustalw
owner: devteam
tool_panel_section_label: Sequence Analysis
- name: repeat_masker
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: prokka
owner: crs4
tool_panel_section_label: Sequence Analysis
- name: aligned_to_consensus
owner: ecology
tool_panel_section_label: Sequence Analysis
- name: kofamscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: blat
owner: crs4
tool_panel_section_label: Deprecated
- name: locarna_pairwise_p
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_exparnap
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_multiple
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_reliability_profile
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_pairwise
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: sortmerna
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: muscle
owner: crs4
tool_panel_section_label: Sequence Analysis
- name: rdock
owner: earlhaminst
tool_panel_section_label: Computational chemistry
- name: samtools_flagstat
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: picard
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_mpileup
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_slice_bam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_view
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_coverage
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_depth
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_fastx
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_fixmate
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_markdup
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_merge
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_split
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_stats
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_sort
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_bedcov
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: sam_to_bam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: bam_to_sam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_calmd
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_idxstats
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_reheader
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: abyss
owner: iuc
tool_panel_section_label: Assembly
- name: rnaquast
owner: iuc
tool_panel_section_label: Assembly
- name: velvetoptimiser
owner: simon-gladman
tool_panel_section_label: Assembly
- name: velvet
owner: devteam
tool_panel_section_label: Assembly
- name: quast
owner: iuc
tool_panel_section_label: Assembly
- name: spades
owner: nml
tool_panel_section_label: Assembly
- name: spades_rnaviralspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_plasmidspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_metaviralspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_metaplasmidspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_coronaspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_biosyntheticspades
owner: iuc
tool_panel_section_label: Assembly
- name: rnaspades
owner: iuc
tool_panel_section_label: Assembly
- name: metaspades
owner: nml
tool_panel_section_label: Assembly
- name: ball
owner: luis
tool_panel_section_label: Computational chemistry - Ball
- name: join
owner: devteam
tool_panel_section_label: Join, Subtract and Group
- name: regex_find_replace
owner: galaxyp
tool_panel_section_label: Text Manipulation
- name: datamash_transpose
owner: iuc
tool_panel_section_label: Text Manipulation
- name: datamash_ops
owner: iuc
tool_panel_section_label: Text Manipulation
- name: datamash_reverse
owner: iuc
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
tool_panel_section_label: Text Manipulation
- name: singularity_scriptrunner
owner: mbernt
tool_panel_section_label: Text Manipulation
- name: query_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: text_processing
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: get_flanks
owner: devteam
tool_panel_section_label: Genomic Interval Operations
- name: intersect
owner: devteam
tool_panel_section_label: Genomic Interval Operations
- name: xcms_xcmsset
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_group
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_merge
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_plot_chromatogram
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_retcor
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_fillpeaks
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_summary
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: camera_annotate
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: camera_combinexsannos
owner: workflow4metabolomics
tool_panel_section_label: Metabolomics - W4M
- name: msnbase_readmsdata
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: batchcorrection
owner: melpetera
tool_panel_section_label: Metabolomics - W4M
- name: w4mclassfilter
owner: eschen42
tool_panel_section_label: Metabolomics - W4M
- name: qualitymetrics
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: probmetab
owner: mmonsoor
tool_panel_section_label: Metabolomics - W4M
- name: lcmsmatching
owner: prog
tool_panel_section_label: Metabolomics - W4M
- name: hmdb_ms_search
owner: fgiacomoni
tool_panel_section_label: Metabolomics - W4M
- name: metams_rungc
owner: yguitton
tool_panel_section_label: Metabolomics - W4M
- name: nmr_bucketing
owner: marie-tremblay-metatoul
tool_panel_section_label: Metabolomics - W4M
- name: transformation
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: anova
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: heatmap
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: multivariate
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: biosigner
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: checkformat
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: combine_metaphlan2_humann2
owner: bebatut
tool_panel_section_label: Metagenomics
- name: taxonomy_krona_chart
owner: crs4
tool_panel_section_label: Metagenomics
- name: humann_regroup_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_barplot
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_reduce_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_rna_dna_norm
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_join_tables
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_rename_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_strain_profiler
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_split_stratified_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_split_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_renorm_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_associate
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_unpack_pathways
owner: iuc
tool_panel_section_label: Metagenomics
- name: extract_metaphlan_database
owner: iuc
tool_panel_section_label: Metagenomics
- name: customize_metaphlan_database
owner: iuc
tool_panel_section_label: Metagenomics
- name: merge_metaphlan_tables
owner: iuc
tool_panel_section_label: Metagenomics
- name: metaphlan
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_add_metadata
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_from_uc
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_normalize_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_convert
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_summarize_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_subset_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: cat_bins
owner: iuc
tool_panel_section_label: Metagenomics
- name: das_tool
owner: iuc
tool_panel_section_label: Metagenomics
- name: kraken2
owner: iuc
tool_panel_section_label: Metagenomics
- name: megahit
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tree
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_lineage_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tree_qa
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_analyze
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_taxonomy_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tetra
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_qa
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_taxon_set
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_plot
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_lineage_set
owner: iuc
tool_panel_section_label: Metagenomics
- name: gtdbtk_classify_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_extract_kraken_reads
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_beta_diversity
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_combine_kreports
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_alpha_diversity
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_kreport2krona
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_kreport2mpa
owner: iuc
tool_panel_section_label: Metagenomics
- name: metabat2_jgi_summarize_bam_contig_depths
owner: iuc
tool_panel_section_label: Metagenomics
- name: metabat2
owner: iuc
tool_panel_section_label: Metagenomics
- name: krona_text
owner: saskia-hiltemann
tool_panel_section_label: Metagenomics
- name: mothur_bin_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_slayer
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_anosim
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_lefse
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_hcluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_list_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_dists
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sffinfo
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_otu
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_perseus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_count_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_venn
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_align_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_fastq_info
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_rarefaction_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_label
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_deunique_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_list_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pre_cluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_contigs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_phylo_diversity
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pcoa
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_pintail
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pairwise_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_clearcut
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_corr_axes
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_tree
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_design
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_libshuff
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_lefse
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_trim_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_fragments
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_qual
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chop_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_count_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_rabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otulist
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_classic
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_split_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cooccurrence
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_filter_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_tax
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_nmds
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_biom
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_communitytype
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unifrac_weighted
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_dist_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_shhh_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_sfffiles
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_relabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_oturep
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_heatmap_bin
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_files
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_otu_association
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_otus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_sharedseqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_collect_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sub_sample
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_mantel
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_sra
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_seq_error
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_amova
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_reverse_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_check
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_uchime
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unique_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_coremicrobiome
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_group
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_rarefaction_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_screen_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_trim_flows
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_fastq
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_dist_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_filter_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_phylotype
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_mimarks_attributes
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_degap_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_align_check
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pcr_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_lineage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_parsimony
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sens_spec
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unifrac_unweighted
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_heatmap_sim
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pca
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_metastats
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_normalize_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_lookup
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_split
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_consensus_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_ccode
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_dists
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_sabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_shhh_flows
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_mimarkspackage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_rare
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_lineage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_taxsummary
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_indicator
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_bellerophon
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_tree_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sort_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_rf
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_create_database
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_otu_hierarchy
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_split_abund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_parse_list
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_primer_design
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_homova
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_group
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_deunique_tree
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_collect_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: fasta_stats
owner: simon-gladman
tool_panel_section_label: Fasta Manipulation
- name: make_nr
owner: peterjc
tool_panel_section_label: Fasta Manipulation
- name: ucsc_fasplit
owner: iuc
tool_panel_section_label: Fasta Manipulation
- name: length_and_gc_content
owner: iuc
tool_panel_section_label: Fasta Manipulation
- name: fastx_artifacts_filter
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_barcode_splitter
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_clipper
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_collapser
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_nucleotides_distribution
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_quality_statistics
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_renamer
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_reverse_complement
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_trimmer
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastq_paired_end_deinterlacer
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: fastq_paired_end_interlacer
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: filter_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: sqlite_to_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: univariate
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: unipept
owner: galaxyp
tool_panel_section_label: Proteomics
- name: thermo_raw_file_converter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: meta_proteome_analyzer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: uniprot_rest_interface
owner: bgruening
tool_panel_section_label: Proteomics
- name: peptideshaker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: uniprotxml_downloader
owner: galaxyp
tool_panel_section_label: Proteomics
- name: eggnog_mapper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metanovo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maxquant
owner: galaxyp
tool_panel_section_label: Proteomics
- name: dbbuilder
owner: galaxyp
tool_panel_section_label: Proteomics
- name: alphafold2
owner: galaxy-australia
tool_panel_section_label: Proteomics
- name: calisp
owner: galaxyp
tool_panel_section_label: Proteomics
- name: bedtools
owner: iuc
tool_panel_section_label: BED tools
- name: deseq2
owner: iuc
tool_panel_section_label: Transcriptomics
- name: trinity_align_and_estimate_abundance
owner: iuc
tool_panel_section_label: Transcriptomics
- name: trinity
owner: iuc
tool_panel_section_label: Transcriptomics
- name: egsea
owner: iuc
tool_panel_section_label: Transcriptomics
- name: featurecounts
owner: iuc
tool_panel_section_label: Transcriptomics
- name: goseq
owner: iuc
tool_panel_section_label: Transcriptomics
- name: limma_voom
owner: iuc
tool_panel_section_label: Transcriptomics
- name: stringtie
owner: iuc
tool_panel_section_label: Transcriptomics
- name: gffcompare
owner: iuc
tool_panel_section_label: Transcriptomics
- name: multigsea
owner: iuc
tool_panel_section_label: Transcriptomics
- name: emboss_5
owner: devteam
tool_panel_section_label: Sequence Analysis (EMBOSS)