Stochastic GM+E (mom-ocean#280)

* SKEB+GM

This commit adds a Stochastic Kinetic Energy Backscatter Scheme (SKEBS)
where the amplitude of the backscatter is based on either the GM
work rate and/or the viscous work rate (FrictWork). Each of these
can be multiplied by a coefficient so that, e.g. the backscatter rate
could be 50% of the GM work rate plus 20% of the viscous work rate.
The vertical structure of the backscatter rate associated with GM has
vertical structure given by the EBT profile. This code was developed
starting from Phil Pegion's branch, and it builds on the stochastic
physics package (external) developed by Phil Pegion, Niraj Agarwal,
and collaborators. This package allows the length and time scales
of the backscatter to be set via namelist parameters. This commit
may break the stochastic EPBL and SPPT schemes developed by P.
Pegion.

* Fix merge

* Whitespace

config_src/external/stochastic_physics/stochastic_physics.F90

@@ -16,7 +16,7 @@ module stochastic_physics
 
 !> Initializes the stochastic physics perturbations.
 subroutine init_stochastic_physics_ocn(delt, geoLonT, geoLatT, nx, ny, nz, pert_epbl_in, do_sppt_in, &
-                                       mpiroot, mpicomm, iret)
+                                       do_skeb_in,mpiroot, mpicomm, iret)
   real,    intent(in)    :: delt !< timestep in seconds between calls to run_stochastic_physics_ocn [s]
   integer, intent(in)    :: nx   !< number of gridpoints in the x-direction of the compute grid
   integer, intent(in)    :: ny   !< number of gridpoints in the y-direction of the compute grid
@@ -25,6 +25,7 @@ subroutine init_stochastic_physics_ocn(delt, geoLonT, geoLatT, nx, ny, nz, pert_
   real,    intent(in)    :: geoLatT(nx,ny) !< Latitude in degrees
   logical, intent(in)    :: pert_epbl_in !< logical flag, if true generate random pattern for ePBL perturbations
   logical, intent(in)    :: do_sppt_in   !< logical flag, if true generate random pattern for SPPT perturbations
+  logical, intent(in)    :: do_skeb_in   !< logical flag, if true generate random pattern for SKEB perturbations
   integer, intent(in)    :: mpiroot !< root processor
   integer, intent(in)    :: mpicomm !< mpi communicator
   integer, intent(out)   :: iret    !< return code
@@ -38,14 +39,20 @@ subroutine init_stochastic_physics_ocn(delt, geoLonT, geoLatT, nx, ny, nz, pert_
     call MOM_error(WARNING, 'init_stochastic_physics_ocn: do_sppt needs to be false if using the stub')
     iret=-1
   endif
+  if (do_skeb_in) then
+    call MOM_error(WARNING, 'init_stochastic_physics_ocn: do_skeb needs to be false if using the stub')
+    iret=-1
+  endif
 
   ! This stub function does not actually do anything.
   return
 end subroutine init_stochastic_physics_ocn
 
+
 !> Determines the stochastic physics perturbations.
-subroutine run_stochastic_physics_ocn(sppt_wts, t_rp1, t_rp2)
+subroutine run_stochastic_physics_ocn(sppt_wts, skeb_wts, t_rp1, t_rp2)
   real, intent(inout) :: sppt_wts(:,:) !< array containing random weights for SPPT range [0,2]
+  real, intent(inout) :: skeb_wts(:,:) !< array containing random weights for SKEB
   real, intent(inout) :: t_rp1(:,:)    !< array containing random weights for ePBL
                                        !! perturbations (KE generation) range [0,2]
   real, intent(inout) :: t_rp2(:,:)    !< array containing random weights for ePBL

src/core/MOM.F90

@@ -64,7 +64,7 @@ module MOM
 use MOM_diabatic_driver,       only : diabatic, diabatic_driver_init, diabatic_CS, extract_diabatic_member
 use MOM_diabatic_driver,       only : adiabatic, adiabatic_driver_init, diabatic_driver_end
 use MOM_diabatic_driver,       only : register_diabatic_restarts
-use MOM_stochastics,           only : stochastics_init, update_stochastics, stochastic_CS
+use MOM_stochastics,           only : stochastics_init, update_stochastics, stochastic_CS, apply_skeb
 use MOM_diagnostics,           only : calculate_diagnostic_fields, MOM_diagnostics_init
 use MOM_diagnostics,           only : register_transport_diags, post_transport_diagnostics
 use MOM_diagnostics,           only : register_surface_diags, write_static_fields
@@ -741,7 +741,8 @@ subroutine step_MOM(forces_in, fluxes_in, sfc_state, Time_start, time_int_in, CS
     endif
   endif
   ! advance the random pattern if stochastic physics is active
-  if (CS%stoch_CS%do_sppt .OR. CS%stoch_CS%pert_epbl) call update_stochastics(CS%stoch_CS)
+  if (CS%stoch_CS%do_sppt .OR. CS%stoch_CS%pert_epbl .OR. CS%stoch_CS%do_skeb) &
+    call update_stochastics(CS%stoch_CS)
 
   if (do_dyn) then
     if (nonblocking_p_surf_update) &
@@ -1151,7 +1152,8 @@ subroutine step_MOM_dynamics(forces, p_surf_begin, p_surf_end, dt, dt_thermo, &
       if (CS%VarMix%use_variable_mixing) &
         call calc_slope_functions(h, CS%tv, dt, G, GV, US, CS%VarMix, OBC=CS%OBC)
       call thickness_diffuse(h, CS%uhtr, CS%vhtr, CS%tv, dt_thermo, G, GV, US, &
-                             CS%MEKE, CS%VarMix, CS%CDp, CS%thickness_diffuse_CSp)
+                             CS%MEKE, CS%VarMix, CS%CDp, CS%thickness_diffuse_CSp, &
+                             CS%stoch_CS)
       call cpu_clock_end(id_clock_thick_diff)
       call pass_var(h, G%Domain, clock=id_clock_pass, halo=max(2,CS%cont_stencil))
       if (showCallTree) call callTree_waypoint("finished thickness_diffuse_first (step_MOM)")
@@ -1223,7 +1225,7 @@ subroutine step_MOM_dynamics(forces, p_surf_begin, p_surf_end, dt, dt_thermo, &
     call step_MOM_dyn_split_RK2(u, v, h, CS%tv, CS%visc, Time_local, dt, forces, &
                 p_surf_begin, p_surf_end, CS%uh, CS%vh, CS%uhtr, CS%vhtr, &
                 CS%eta_av_bc, G, GV, US, CS%dyn_split_RK2_CSp, calc_dtbt, CS%VarMix, &
-                CS%MEKE, CS%thickness_diffuse_CSp, CS%pbv, waves=waves)
+                CS%MEKE, CS%thickness_diffuse_CSp, CS%pbv, CS%stoch_CS, waves=waves)
     if (showCallTree) call callTree_waypoint("finished step_MOM_dyn_split (step_MOM)")
 
   elseif (CS%do_dynamics) then ! ------------------------------------ not SPLIT
@@ -1237,11 +1239,13 @@ subroutine step_MOM_dynamics(forces, p_surf_begin, p_surf_end, dt, dt_thermo, &
     if (CS%use_RK2) then
       call step_MOM_dyn_unsplit_RK2(u, v, h, CS%tv, CS%visc, Time_local, dt, forces, &
                p_surf_begin, p_surf_end, CS%uh, CS%vh, CS%uhtr, CS%vhtr, &
-               CS%eta_av_bc, G, GV, US, CS%dyn_unsplit_RK2_CSp, CS%VarMix, CS%MEKE, CS%pbv)
+               CS%eta_av_bc, G, GV, US, CS%dyn_unsplit_RK2_CSp, CS%VarMix, CS%MEKE, CS%pbv, &
+               CS%stoch_CS)
     else
       call step_MOM_dyn_unsplit(u, v, h, CS%tv, CS%visc, Time_local, dt, forces, &
                p_surf_begin, p_surf_end, CS%uh, CS%vh, CS%uhtr, CS%vhtr, &
-               CS%eta_av_bc, G, GV, US, CS%dyn_unsplit_CSp, CS%VarMix, CS%MEKE, CS%pbv, Waves=Waves)
+               CS%eta_av_bc, G, GV, US, CS%dyn_unsplit_CSp, CS%VarMix, CS%MEKE, CS%pbv, &
+               CS%stoch_CS, Waves=Waves)
     endif
     if (showCallTree) call callTree_waypoint("finished step_MOM_dyn_unsplit (step_MOM)")
 
@@ -1282,7 +1286,7 @@ subroutine step_MOM_dynamics(forces, p_surf_begin, p_surf_end, dt, dt_thermo, &
       if (CS%VarMix%use_variable_mixing) &
         call calc_slope_functions(h, CS%tv, dt, G, GV, US, CS%VarMix, OBC=CS%OBC)
       call thickness_diffuse(h, CS%uhtr, CS%vhtr, CS%tv, dt, G, GV, US, &
-                             CS%MEKE, CS%VarMix, CS%CDp, CS%thickness_diffuse_CSp)
+                             CS%MEKE, CS%VarMix, CS%CDp, CS%thickness_diffuse_CSp, CS%stoch_CS)
 
       if (CS%debug) call hchksum(h,"Post-thickness_diffuse h", G%HI, haloshift=1, scale=GV%H_to_MKS)
       call cpu_clock_end(id_clock_thick_diff)
@@ -1584,6 +1588,10 @@ subroutine step_MOM_thermo(CS, G, GV, US, u, v, h, tv, fluxes, dtdia, &
                   Time_end_thermo, G, GV, US, CS%diabatic_CSp, CS%stoch_CS, CS%OBC, Waves)
     fluxes%fluxes_used = .true.
 
+    if (CS%stoch_CS%do_skeb) then
+       call apply_skeb(CS%G,CS%GV,CS%stoch_CS,CS%u,CS%v,CS%h,CS%tv,dtdia,Time_end_thermo)
+    endif
+
     if (showCallTree) call callTree_waypoint("finished diabatic (step_MOM_thermo)")
 
     ! Regridding/remapping is done here, at end of thermodynamics time step

src/core/MOM_dynamics_split_RK2.F90

@@ -59,6 +59,7 @@ module MOM_dynamics_split_RK2
 use MOM_PressureForce,         only : PressureForce, PressureForce_CS
 use MOM_PressureForce,         only : PressureForce_init
 use MOM_set_visc,              only : set_viscous_ML, set_visc_CS
+use MOM_stochastics,           only : stochastic_CS
 use MOM_thickness_diffuse,     only : thickness_diffuse_CS
 use MOM_self_attr_load,        only : SAL_CS
 use MOM_self_attr_load,        only : SAL_init, SAL_end
@@ -286,7 +287,7 @@ module MOM_dynamics_split_RK2
 !> RK2 splitting for time stepping MOM adiabatic dynamics
 subroutine step_MOM_dyn_split_RK2(u, v, h, tv, visc, Time_local, dt, forces, p_surf_begin, p_surf_end, &
                                   uh, vh, uhtr, vhtr, eta_av, G, GV, US, CS, calc_dtbt, VarMix, &
-                                  MEKE, thickness_diffuse_CSp, pbv, Waves)
+                                  MEKE, thickness_diffuse_CSp, pbv, STOCH, Waves)
   type(ocean_grid_type),             intent(inout) :: G            !< Ocean grid structure
   type(verticalGrid_type),           intent(in)    :: GV           !< Ocean vertical grid structure
   type(unit_scale_type),             intent(in)    :: US           !< A dimensional unit scaling type
@@ -326,6 +327,7 @@ subroutine step_MOM_dyn_split_RK2(u, v, h, tv, visc, Time_local, dt, forces, p_s
   type(thickness_diffuse_CS),        intent(inout) :: thickness_diffuse_CSp !< Pointer to a structure containing
                                                                    !! interface height diffusivities
   type(porous_barrier_type),         intent(in)    :: pbv          !< porous barrier fractional cell metrics
+  type(stochastic_CS),               intent(inout) :: STOCH        !< Stochastic control structure
   type(wave_parameters_CS), optional, pointer      :: Waves        !< A pointer to a structure containing
                                                                    !! fields related to the surface wave conditions
 
@@ -851,7 +853,7 @@ subroutine step_MOM_dyn_split_RK2(u, v, h, tv, visc, Time_local, dt, forces, p_s
   call horizontal_viscosity(u_av, v_av, h_av, CS%diffu, CS%diffv, &
                             MEKE, Varmix, G, GV, US, CS%hor_visc, &
                             OBC=CS%OBC, BT=CS%barotropic_CSp, TD=thickness_diffuse_CSp, &
-                            ADp=CS%ADp)
+                            ADp=CS%ADp, STOCH=STOCH)
   call cpu_clock_end(id_clock_horvisc)
   if (showCallTree) call callTree_wayPoint("done with horizontal_viscosity (step_MOM_dyn_split_RK2)")
 

src/core/MOM_dynamics_unsplit.F90

@@ -87,8 +87,9 @@ module MOM_dynamics_unsplit
 use MOM_open_boundary, only : open_boundary_zero_normal_flow
 use MOM_PressureForce, only : PressureForce, PressureForce_init, PressureForce_CS
 use MOM_set_visc, only : set_viscous_ML, set_visc_CS
-use MOM_self_attr_load, only : SAL_init, SAL_end, SAL_CS
+use MOM_stochastics,   only : stochastic_CS
 use MOM_tidal_forcing, only : tidal_forcing_init, tidal_forcing_end, tidal_forcing_CS
+use MOM_self_attr_load, only : SAL_init, SAL_end, SAL_CS
 use MOM_unit_scaling,  only : unit_scale_type
 use MOM_vert_friction, only : vertvisc, vertvisc_coef, vertvisc_init, vertvisc_CS
 use MOM_verticalGrid, only : verticalGrid_type, get_thickness_units
@@ -189,7 +190,7 @@ module MOM_dynamics_unsplit
 !! 3rd order (for the inviscid momentum equations) order scheme
 subroutine step_MOM_dyn_unsplit(u, v, h, tv, visc, Time_local, dt, forces, &
                   p_surf_begin, p_surf_end, uh, vh, uhtr, vhtr, eta_av, G, GV, US, CS, &
-                  VarMix, MEKE, pbv, Waves)
+                  VarMix, MEKE, pbv, STOCH, Waves)
   type(ocean_grid_type),   intent(inout) :: G      !< The ocean's grid structure.
   type(verticalGrid_type), intent(in)    :: GV     !< The ocean's vertical grid structure.
   type(unit_scale_type),   intent(in)    :: US     !< A dimensional unit scaling type
@@ -223,6 +224,7 @@ subroutine step_MOM_dyn_unsplit(u, v, h, tv, visc, Time_local, dt, forces, &
   type(VarMix_CS),         intent(inout) :: VarMix !< Variable mixing control structure
   type(MEKE_type),         intent(inout) :: MEKE   !< MEKE fields
   type(porous_barrier_type), intent(in) :: pbv     !< porous barrier fractional cell metrics
+  type(stochastic_CS),   intent(inout) :: STOCH    !< Stochastic control structure
   type(wave_parameters_CS), optional, pointer :: Waves !< A pointer to a structure containing
                                  !! fields related to the surface wave conditions
 
@@ -263,7 +265,7 @@ subroutine step_MOM_dyn_unsplit(u, v, h, tv, visc, Time_local, dt, forces, &
 ! diffu = horizontal viscosity terms (u,h)
   call enable_averages(dt, Time_local, CS%diag)
   call cpu_clock_begin(id_clock_horvisc)
-  call horizontal_viscosity(u, v, h, CS%diffu, CS%diffv, MEKE, Varmix, G, GV, US, CS%hor_visc)
+  call horizontal_viscosity(u, v, h, CS%diffu, CS%diffv, MEKE, Varmix, G, GV, US, CS%hor_visc, STOCH=STOCH)
   call cpu_clock_end(id_clock_horvisc)
   call disable_averaging(CS%diag)
 

src/core/MOM_dynamics_unsplit_RK2.F90

@@ -87,6 +87,7 @@ module MOM_dynamics_unsplit_RK2
 use MOM_PressureForce, only : PressureForce, PressureForce_init, PressureForce_CS
 use MOM_set_visc, only : set_viscous_ML, set_visc_CS
 use MOM_self_attr_load, only : SAL_init, SAL_end, SAL_CS
+use MOM_stochastics,   only : stochastic_CS
 use MOM_tidal_forcing, only : tidal_forcing_init, tidal_forcing_end, tidal_forcing_CS
 use MOM_unit_scaling, only : unit_scale_type
 use MOM_vert_friction, only : vertvisc, vertvisc_coef, vertvisc_init, vertvisc_CS
@@ -192,7 +193,7 @@ module MOM_dynamics_unsplit_RK2
 !> Step the MOM6 dynamics using an unsplit quasi-2nd order Runge-Kutta scheme
 subroutine step_MOM_dyn_unsplit_RK2(u_in, v_in, h_in, tv, visc, Time_local, dt, forces, &
                   p_surf_begin, p_surf_end, uh, vh, uhtr, vhtr, eta_av, G, GV, US, CS, &
-                  VarMix, MEKE, pbv)
+                  VarMix, MEKE, pbv, STOCH)
   type(ocean_grid_type),             intent(inout) :: G       !< The ocean's grid structure.
   type(verticalGrid_type),           intent(in)    :: GV      !< The ocean's vertical grid structure.
   type(unit_scale_type),             intent(in)    :: US      !< A dimensional unit scaling type
@@ -237,6 +238,7 @@ subroutine step_MOM_dyn_unsplit_RK2(u_in, v_in, h_in, tv, visc, Time_local, dt,
                                                               !! fields related to the Mesoscale
                                                               !! Eddy Kinetic Energy.
   type(porous_barrier_type), intent(in) :: pbv                !< porous barrier fractional cell metrics
+  type(stochastic_CS),   intent(inout) :: STOCH               !< Stochastic control structure
   ! Local variables
   real, dimension(SZI_(G),SZJ_(G),SZK_(GV))  :: h_av ! Averaged layer thicknesses [H ~> m or kg m-2]
   real, dimension(SZI_(G),SZJ_(G),SZK_(GV))  :: hp ! Predicted layer thicknesses [H ~> m or kg m-2]
@@ -276,7 +278,7 @@ subroutine step_MOM_dyn_unsplit_RK2(u_in, v_in, h_in, tv, visc, Time_local, dt,
   call enable_averages(dt,Time_local, CS%diag)
   call cpu_clock_begin(id_clock_horvisc)
   call horizontal_viscosity(u_in, v_in, h_in, CS%diffu, CS%diffv, MEKE, VarMix, &
-                            G, GV, US, CS%hor_visc)
+                            G, GV, US, CS%hor_visc, STOCH=STOCH)
   call cpu_clock_end(id_clock_horvisc)
   call disable_averaging(CS%diag)
   call pass_vector(CS%diffu, CS%diffv, G%Domain, clock=id_clock_pass)

src/parameterizations/lateral/MOM_hor_visc.F90

@@ -20,6 +20,7 @@ module MOM_hor_visc
 use MOM_MEKE_types,            only : MEKE_type
 use MOM_open_boundary,         only : ocean_OBC_type, OBC_DIRECTION_E, OBC_DIRECTION_W
 use MOM_open_boundary,         only : OBC_DIRECTION_N, OBC_DIRECTION_S, OBC_NONE
+use MOM_stochastics,           only : stochastic_CS
 use MOM_unit_scaling,          only : unit_scale_type
 use MOM_verticalGrid,          only : verticalGrid_type
 use MOM_variables,             only : accel_diag_ptrs
@@ -241,7 +242,7 @@ module MOM_hor_visc
 !!   v[is-2:ie+2,js-2:je+2]
 !!   h[is-1:ie+1,js-1:je+1]
 subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US, &
-                                CS, OBC, BT, TD, ADp)
+                                CS, OBC, BT, TD, ADp, STOCH)
   type(ocean_grid_type),         intent(in)  :: G      !< The ocean's grid structure.
   type(verticalGrid_type),       intent(in)  :: GV     !< The ocean's vertical grid structure.
   real, dimension(SZIB_(G),SZJ_(G),SZK_(GV)), &
@@ -265,6 +266,7 @@ subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US,
   type(barotropic_CS), intent(in), optional  :: BT     !< Barotropic control structure
   type(thickness_diffuse_CS), intent(in), optional :: TD  !< Thickness diffusion control structure
   type(accel_diag_ptrs), intent(in), optional :: ADp   !< Acceleration diagnostics
+  type(stochastic_CS), intent(inout), optional :: STOCH !< Stochastic control structure
 
   ! Local variables
   real, dimension(SZIB_(G),SZJ_(G)) :: &
@@ -395,6 +397,7 @@ subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US,
   logical :: apply_OBC = .false.
   logical :: use_MEKE_Ku
   logical :: use_MEKE_Au
+  logical :: skeb_use_frict
   integer :: is_vort, ie_vort, js_vort, je_vort  ! Loop ranges for vorticity terms
   integer :: is_Kh, ie_Kh, js_Kh, je_Kh  ! Loop ranges for thickness point viscosities
   integer :: is, ie, js, je, Isq, Ieq, Jsq, Jeq, nz
@@ -426,6 +429,9 @@ subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US,
   inv_PI2 = 1.0/((4.0*atan(1.0))**2)
   inv_PI6 = inv_PI3 * inv_PI3
 
+  skeb_use_frict = .false.
+  if (present(STOCH)) skeb_use_frict = STOCH%skeb_use_frict
+
   m_leithy(:,:) = 0.0 ! Initialize
 
   if (present(OBC)) then ; if (associated(OBC)) then ; if (OBC%OBC_pe) then
@@ -588,12 +594,12 @@ subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US,
   !$OMP   CS, G, GV, US, OBC, VarMix, MEKE, u, v, h, &
   !$OMP   is, ie, js, je, Isq, Ieq, Jsq, Jeq, nz, is_vort, ie_vort, js_vort, je_vort, &
   !$OMP   is_Kh, ie_Kh, js_Kh, je_Kh, apply_OBC, rescale_Kh, legacy_bound, find_FrictWork, &
-  !$OMP   use_MEKE_Ku, use_MEKE_Au, u_smooth, v_smooth, &
+  !$OMP   use_MEKE_Ku, use_MEKE_Au, u_smooth, v_smooth, skeb_use_frict, &
   !$OMP   backscat_subround, GME_effic_h, GME_effic_q, &
   !$OMP   h_neglect, h_neglect3, inv_PI3, inv_PI6, &
   !$OMP   diffu, diffv, Kh_h, Kh_q, Ah_h, Ah_q, FrictWork, FrictWork_GME, &
   !$OMP   div_xx_h, sh_xx_h, vort_xy_q, sh_xy_q, GME_coeff_h, GME_coeff_q, &
-  !$OMP   KH_u_GME, KH_v_GME, grid_Re_Kh, grid_Re_Ah, NoSt, ShSt &
+  !$OMP   KH_u_GME, KH_v_GME, grid_Re_Kh, grid_Re_Ah, NoSt, ShSt, STOCH &
   !$OMP ) &
   !$OMP private( &
   !$OMP   i, j, k, n, &
@@ -1786,6 +1792,12 @@ subroutine horizontal_viscosity(u, v, h, diffu, diffv, MEKE, VarMix, G, GV, US,
                     + (v(i+1,J-1,k)-v(i,J-1,k))*G%IdxBu(I,J-1)) ) ) )
     enddo ; enddo ; endif
 
+    if (skeb_use_frict) then ; do j=js,je ; do i=is,ie
+      ! Note that the sign convention is FrictWork < 0 means energy dissipation.
+      STOCH%skeb_diss(i,j,k) = STOCH%skeb_diss(i,j,k) - STOCH%skeb_frict_coef * &
+                               FrictWork(i,j,k) / (GV%H_to_RZ * (h(i,j,k) + h_neglect))
+    enddo ; enddo ; endif
+
     ! Make a similar calculation as for FrictWork above but accumulating into
     ! the vertically integrated MEKE source term, and adjusting for any
     ! energy loss seen as a reduction in the (biharmonic) frictional source term.