-
Notifications
You must be signed in to change notification settings - Fork 6
/
sushi-config.yaml
214 lines (182 loc) · 11.6 KB
/
sushi-config.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
# ╭────────────────────────────────────────────────────────────────────────────────────────────────╮
# │ ACTION REQUIRED: REVIEW AND EDIT THIS FILE TO ENSURE IT ACCURATELY REFLECTS YOUR PROJECT! │
# │ │
# │ This file was generated from your existing project files and will be used for SUSHI │
# │ configuration from now on. You may delete your package.json as it is no longer needed. │
# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
# ╭──────────────────────────────ImplementationGuide-gh.json───────────────────────────────╮
# │ The properties below are used to create the ImplementationGuide resource. For a list of │
# │ supported properties, see: │
# │ http://build.fhir.org/ig/HL7/fhir-shorthand/branches/beta/sushi.md#ig-development │
# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
id: hl7.fhir.uv.fhir-for-fair
canonical: http://hl7.org/fhir/uv/fhir-for-fair
version: 1.0.0
name: FhirForFairIG
title: FHIR for FAIR - FHIR Implementation Guide
status: active
publisher:
- name: Health Level Seven International - SOA Work Group
url: http://www.hl7.org/Special/committees/soa
contact:
- name: HL7 SOA Work Group
telecom:
- system: url
value: http://www.hl7.org/Special/committees/soa
description: The FHIR for FAIR - FHIR Implementation Guide aims to provide guidance on how HL7 FHIR can be used for supporting FAIR health data implementation and assessment.
license: CC0-1.0
fhirVersion: 4.3.0
# fhirVersion: 4.3.0-snapshot1
# fhirVersion: 4.0.1
# fhirVersion: 4.1.0
jurisdiction: http://unstats.un.org/unsd/methods/m49/m49.htm#001 "World"
parameters:
find-other-resources: true
apply-jurisdiction: true
apply-publisher: true
apply-version: true
copyrightYear: 2020+
releaseLabel: STU 1
resources:
StructureDefinition/Library-uv-f4f:
name: Library [Study Level Medatata]
description: This profile defines how to use the Library resource to convey metadata information for a FAIR dataset realized by using HL7 FHIR
StructureDefinition/ResearchStudy-uv-f4f:
name: ResearchStudy [Study Level Medatata]
description: This profile defines how to use the ResearchStudy resource to convey metadata information for a FAIR collection of data at the study level realized by using HL7 FHIR
StructureDefinition/DocumentManifest-uv-f4f:
name: DocumentManifest [Subject Level Medatata]
description: This profile defines how to use the DocumentManifest resource to convey metadata information for a FAIR collection of data at the subject level realized by using HL7 FHIR
Library/ninfea-1:
name: Non-invasive foetal electrocardiography example [Library]
description: Example of usage of the Library reosurce to describe study level metadata. This example is based on the Non-invasive foetal electrocardiography NInFEA case.
exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
Library/f4h-1:
name: FAIR4Health portal [Library]
description: Example of usage of the Library resource to describe project level metadata. This example is based on the data published by the FAIR4Health project thorugh the https://portal.fair4health.eu/ portal
exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
Library/f4h-lib-1:
name: FAIR4Health study case 1 [Library]
description: Example of usage of the Library resource to describe study level metadata. This example is based on the FAIR4Health study case 1 Identification of multimorbidity patterns and polypharmacy correlation on the risk of mortality in elderly, and demonstrate the reproducibility of research
exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
Library/f4h-lib-2:
name: FAIR4Health study case 2 [Library]
description: Example of usage of the Library resource to describe study level metadata. This example is based on the FAIR4Health study case 2 Develop and pilot an early prediction service for 30-days readmission risk in COPD (Chronic Obstructive Pulmonary Disease) patient
exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
ResearchStudy/f4h-rs-2:
name: FAIR4Health study case 2 [ResearchStudy]
description: Example of usage of the ResearchStudy resource to describe study level metadata. This example is based on the FAIR4Health study case 2 Develop and pilot an early prediction service for 30-days readmission risk in COPD (Chronic Obstructive Pulmonary Disease) patient
DocumentManifest/example-f4f-manifest:
name: Subject Level Data Collection [DocumentManifest]
description: Example of usage of the DocumentManifest resource to describe subject level metadata.
List/example-f4f-list:
name: Subject Level Data Collection [List]
description: Example of usage of the List resource to describe subject level metadata.
Condition/example-f4f-condition:
name: Sample used by the Subject Level Collection [Condition]
description: Example of Condition resource used by the DocumentManifest example.
Patient/example-f4f-patient:
name: Sample used by the Subject Level Collection [Patient]
description: Example of Patient resource used by the DocumentManifest example.
MedicationStatement/example-f4f-medicationStatement-1:
name: MedicationStatement Sample used by the Subject Level Collection [1]
description: Example of MedicationStatement resource used by the DocumentManifest example.
MedicationStatement/example-f4f-medicationStatement-2:
name: MedicationStatement Sample used by the Subject Level Collection [2]
description: Example of MedicationStatement resource used by the DocumentManifest example.
# name: FRAILSURVEY Study level metadata example (Library)
# description: FRAILSURVEY is an app that collects data from elderly communally. This app integrates Groningen Frailty Index, and a set of questions about socio demographic data, social resources, self-perception of health, nutrition, medication, cognitive and psychosocial status and time occupation. The results obtained classify the elderly as robust, pre-frail or frail. The app displays tailored recommendations if the elderly is classified as frail or pre-frail. The recommendations cover aspects such as physical exercise, healthy diet, social network,
# among others. FRAILSURVEY generates a totally anonymous database that can be used for research purposes. The development of such technology was based on an accessibility principle for the elderly, with the purpose of guaranteeing a greater autonomy to use it. Considerations such as vision, hearing, motor control and cognition were considered. In addition, the app features a typographic font designed for low-vision people, APHont, developed by the American Printing House for the Blind, also presenting a way to increase or decrease the font size, as well as the possibility of listening to some audio information.
# exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
# Library/26dc407a-9b03-4a25-9dad-7e53ce6b4bbb:
# name: Non-invasive foetal electrocardiography example (Library)
# description: Non-invasive foetal electrocardiography
# exampleCanonical: http://hl7.org/fhir/uv/fhir-for-fair/StructureDefinition/Library-uv-f4f
pages:
index.md:
title: FHIR for FAIR Home Page
aboutThisVersion.md:
title: About this version
rw-overview.md:
title: Overview
recommendations.md:
title: General Recommendations
immPort.md:
title: Immunology Database and Analysis Portal
FAIR4Health.md:
title: FAIR4Health Project
leipzigHealthAtlas.md:
title: Leipzig Health Atlas (LHA)
terminology.md:
title: Terminologies
FHIRandRDAMetrics.md:
title: Implementing the RDA Indicators
RDAMetrics.md:
title: RDA Indicators
methodology.md:
title: Methodology
deployment.md:
title: Deployments
metadata.md:
title: Metadata and data
FAIR.md:
title: FAIR Guiding Principles
citation.md:
title: Representing FAIR metadata with Citation
FHIRandFAIR.md:
title: Implementing the FAIR principles
FHIRidentifiers.md:
title: FHIR identifiers and FAIR principles
ninfea.md:
title: Non-Invasive Multimodal Foetal ECG-Doppler Dataset for Antenatal Cardiology Research
mimic.md:
title: The Medical Information Mart for Intensive Care IV - Emergency Department (MIMIC-IV-ED, v1.0) dataset
NFDI4Health.md:
title: The NFDI4Health consortia
PHT.md:
title: The Personal Health Train
cedar.md:
title: Center for Evidence and Practice Improvement (CEPI) Evidence Discovery and Retrieval (CEDAR) - Making evidence more FAIR
downloads.html:
title: Useful Downloads
copyrights.md:
title: Acknowledgments, licenses and copyrights
changes.html:
title: IG Change History
# ╭────────────────────────────────────────────menu.xml────────────────────────────────────────────╮
# │ To use a provided input/includes/menu.xml file, delete the menu property below. │
# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
menu:
IG Home: index.html
Table of Contents: toc.html
Background:
About this version: aboutThisVersion.html
Methodology: methodology.html
FAIR Guiding Principles: FAIR.html
RDA Indicators: RDAMetrics.html
Metadata and Data: metadata.html
Identifiers: FHIRidentifiers.html
Deployment: deployment.html
Real World Cases:
Overview: rw-overview.html
FAIR4Health Project: FAIR4Health.html
MIMIC-IV-ED: mimic.html
Immunology Database and Analysis Portal: immPort.html
NInFEA: ninfea.html
Leipzig Health Atlas (LHA): leipzigHealthAtlas.html
NFDI4Health: NFDI4Health.html
CEDAR: cedar.html
Personal Health Train: PHT.html
Guidelines:
General recommendations: recommendations.html
Implementing FAIR principles: FHIRandFAIR.html
Implementing RDA Indicators: FHIRandRDAMetrics.html
Representing metadata with Citation: citation.html
Terminologies: terminology.html
Artifact Index: artifacts.html
Support:
# link to FHIR specs to be checked
FHIR Spec: https://build.fhir.org/branches/R4B/index.html
Downloads: downloads.html
Copyrights: copyrights.html
FSHOnly: false