You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
When I use the dips database for training, the run.py script reports an error: IndexError: too many indices for tensor of dimension 2.The position of the pt file obtained by gen_dips_datasets.py has only two dimensions: sequence position and three-dimensional coordinates. There’s no dimension of atomic type. Could you please provide guidance on how to handle this issue?
Original Traceback (most recent call last):
File "/root/miniconda3/envs/geo/lib/python3.9/site-packages/torch/utils/data/_utils/worker.py", line 308, in _worker_loop
data = fetcher.fetch(index)
File "/root/miniconda3/envs/geo/lib/python3.9/site-packages/torch/utils/data/_utils/fetch.py", line 51, in fetch
data = [self.dataset[idx] for idx in possibly_batched_index]
File "/root/miniconda3/envs/geo/lib/python3.9/site-packages/torch/utils/data/_utils/fetch.py", line 51, in <listcomp>
data = [self.dataset[idx] for idx in possibly_batched_index]
File "/root/GeoDock-main/geodock/datasets/geodock_dataset.py", line 257, in __getitem__
label_rotat = self.get_rotat(label_coords)
File "/root/GeoDock-main/geodock/datasets/geodock_dataset.py", line 322, in get_rotat
n_coords = coords[:, 0, :]
The text was updated successfully, but these errors were encountered:
When I use the dips database for training, the run.py script reports an error: IndexError: too many indices for tensor of dimension 2.The position of the pt file obtained by gen_dips_datasets.py has only two dimensions: sequence position and three-dimensional coordinates. There’s no dimension of atomic type. Could you please provide guidance on how to handle this issue?
The text was updated successfully, but these errors were encountered: