diff --git a/_dasldemos/fh-cbio-intro.md b/_dasldemos/fh-cbio-intro.md index 0268774f..4fb9c3b7 100644 --- a/_dasldemos/fh-cbio-intro.md +++ b/_dasldemos/fh-cbio-intro.md @@ -236,6 +236,7 @@ There are many publicly available formatting tools that may help with the format | [shah-cbioportal-tools](https://github.com/shahcompbio/cbioportal-tools) | Specifically for formatting Copy Number Data expects a seg file and TITAN output | - Could potentially be used for tools other than TITAN that generate a seg file | - Specific for TITAN outputs | [shah-cbioportal-tools](https://github.com/FredHutch/cbioportal-data-formatting/tree/main/05_useful_tools/shah-cbioportal-tools) | ## Quick Links +- [Fred Hutch cBioPortal Demo Day Recording](https://fredhutch.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1e1ae5d3-8b2f-4be7-acc6-b2290121babc) - [Public instance of cBioPortal](https://www.cbioportal.org/) - [cBioPortal data formatting instructions](https://docs.cbioportal.org/file-formats/#introduction) - [Fred Hutch data formatting tips and tools](https://github.com/FredHutch/cbioportal-data-formatting) diff --git a/_datascience/cbioportal.md b/_datascience/cbioportal.md index dcc2ad63..4ba83f99 100644 --- a/_datascience/cbioportal.md +++ b/_datascience/cbioportal.md @@ -20,6 +20,9 @@ The [Fred Hutch deployment of cBioPortal](https://cbioportal.fredhutch.org/) pro - Find out more about the Fred Hutch instance of cBioPortal and how to upload your study [in the DaSL Resource Library](/dasldemos/fh-cbio-intro/). - Read more the data formats required for upload and explore a selection of tools that will help with this formatting in the Fred Hutch [cbioportal-data-formatting](https://github.com/FredHutch/cbioportal-data-formatting) repository. - The creators of cBioPortal at [MSK](https://docs.cbioportal.org/about-us/) provide a great series of [video tutorials](https://www.youtube.com/@cbioportal) that will guide you through how to use the cBioPortal interface. +- Check out the recording below of our Fred Hutch cBioPortal Demo Day demonstrating how to use cBioPortal in general, the benefits of the Fred-Hutch-specific instance, and how to safely and securely upload your own study data. (_Note: some of the processes discussed in this video are specific to Fred Hutch and do not apply to all instances of cBioPortal._) + + ### Technical Documentation and Repositories