From 42bce5b3644f2d16ed6910601504d6dda96bb5b6 Mon Sep 17 00:00:00 2001
From: tefirman <tefirman@gmail.com>
Date: Mon, 16 Dec 2024 10:53:24 -0800
Subject: [PATCH] Adding initial versions of GitHub Actions

---
 .github/workflows/cromwell-test-run.yml | 32 +++++++++++++++++++++++
 .github/workflows/womtools-validate.yml | 34 +++++++++++++++++++++++++
 2 files changed, 66 insertions(+)
 create mode 100644 .github/workflows/cromwell-test-run.yml
 create mode 100644 .github/workflows/womtools-validate.yml

diff --git a/.github/workflows/cromwell-test-run.yml b/.github/workflows/cromwell-test-run.yml
new file mode 100644
index 0000000..86ea80c
--- /dev/null
+++ b/.github/workflows/cromwell-test-run.yml
@@ -0,0 +1,32 @@
+name: Cromwell Test Run
+
+on:
+  workflow_dispatch:
+
+jobs:
+  testrun:
+    runs-on: ubuntu-latest
+    permissions: write-all
+    steps:
+      -
+        name: Checkout
+        uses: actions/checkout@v4
+      -
+        name: Set Up Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: '21'
+      -
+        name: Pull Cromwell Jarfile
+        run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar
+      -
+        name: Execute Test Run of WDL Workflows
+        run: |
+          java -jar cromwell-86.jar run helloHostname/helloHostname.wdl
+          java -jar cromwell-86.jar run helloModuleHostname/helloModuleHostname.wdl
+          java -jar cromwell-86.jar run helloDockerHostname/helloDockerHostname.wdl
+
+
+
+
diff --git a/.github/workflows/womtools-validate.yml b/.github/workflows/womtools-validate.yml
new file mode 100644
index 0000000..ad88369
--- /dev/null
+++ b/.github/workflows/womtools-validate.yml
@@ -0,0 +1,34 @@
+name: WOMtool Validation of WDL Script
+
+on:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  packages: write
+
+jobs:
+  womtoolval:
+    runs-on: ubuntu-latest
+    steps:
+      -
+        name: Checkout
+        uses: actions/checkout@v4
+      -
+        name: Set Up Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: '21'
+      -
+        name: Pull WOMtool Jarfile
+        run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/womtool-86.jar
+      -
+        name: Validate WDL Scripts
+        run: |
+          java -jar womtool-86.jar validate helloHostname/helloHostname.wdl
+          java -jar womtool-86.jar validate helloModuleHostname/helloModuleHostname.wdl
+          java -jar womtool-86.jar validate helloDockerHostname/helloDockerHostname.wdl
+
+
+