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Create more vignettes with best practices for data processing, figures, tables, etc. #237

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kelliemac opened this issue Sep 5, 2024 · 4 comments
Open

Create more vignettes with best practices for data processing, figures, tables, etc. #237

kelliemac opened this issue Sep 5, 2024 · 4 comments
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@kelliemac @lemireg
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big picture Require more thought and planning to execute

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@kelliemac
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kelliemac commented Sep 5, 2024 •
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Goal is to keep skeleton.Rmd simple and have best practices, minimal examples in separate vignettes. Can refer to these in skeleton.Rmd with calls to browseVignettes().

List of vignettes we want to have:

  • Data processing vignette (what types of data frames to create (e.g. response rates, other summaries), how to use VISCfunctions)
  • General figures vignette
  • General tables vignette (with sections for kable, gt, and flextable; include complex things like greek letters and equations in tables)
  • BAMA figures and tables
  • NAb figures and tables
  • ICS figures and tables
  • B cell figures and tables

Any others???
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kelliemac commented Sep 6, 2024 •
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Add participant cohort section as well (see #200)

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Note also that figures and tables vignettes should include examples of good captions!

@kelliemac kelliemac mentioned this issue Sep 6, 2024
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lemireg commented Oct 31, 2024

Projects include the creation of vignettes:
https://github.com/orgs/FredHutch/projects

Per preliminary conversation on Oct 31, 2024, Gabby will start on a BAMA visual vignette (or whatever sample data already exists in VISCfunctions) and Kellie will start on a bcell specific vignette.

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See projects: https://github.com/orgs/FredHutch/projects/83

@kelliemac kelliemac added the big picture Require more thought and planning to execute label Jan 7, 2025
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