diff --git a/SEACR_1.1.sh b/SEACR_1.2.sh similarity index 96% rename from SEACR_1.1.sh rename to SEACR_1.2.sh index 75a5fe9..e27f034 100755 --- a/SEACR_1.1.sh +++ b/SEACR_1.2.sh @@ -7,7 +7,7 @@ then echo " SEACR: Sparse Enrichment Analysis for CUT&RUN - Usage: bash SEACR_1.1.sh .bg [.bg | ] ["norm" | "non"] ["relaxed" | "stringent"] output prefix + Usage: bash SEACR_1.2.sh .bg [.bg | ] ["norm" | "non"] ["relaxed" | "stringent"] output prefix Description of input fields: @@ -42,12 +42,12 @@ then Field 6: Region representing the farthest upstream and farthest downstream bases within the denoted coordinates that are represented by the maximum bedgraph signal Examples: - bash SEACR_1.1.sh target.bedgraph IgG.bedgraph norm stringent output + bash SEACR_1.2.sh target.bedgraph IgG.bedgraph norm stringent output Calls enriched regions in target data using normalized IgG control track with stringent threshold - bash SEACR_1.1.sh target.bedgraph IgG.bedgraph non relaxed output + bash SEACR_1.2.sh target.bedgraph IgG.bedgraph non relaxed output Calls enriched regions in target data using non-normalized IgG control track with relaxed threshold - bash SEACR_1.1.sh target.bedgraph 0.01 non stringent output + bash SEACR_1.2.sh target.bedgraph 0.01 non stringent output Calls enriched regions in target data by selecting the top 1% of regions by area under the curve (AUC) " exit 1