Boolean_TCE_modeling_2023

Code and figures related to Ildefonso & Finley npj Systems Biology 2023

Repository Structure:

model-files : this folder contains both the Boulori WT model code and PD1 blockade code to run the model
data_files : contains all data produced from Boolean model, used and generated in data/WT and data/PD1_block.
- WT : folder for all model output from WT
  - all_sims : contains simulation output for all ten thousand WT simulations
  - ES1_sims : data file results for ES1
  - ES2_sims : data file results for ES2
  - ES3_sims : data file results for ES3
  - ES4_sims : data file results for ES4
  - ES5_sims : data file results for ES5
  - ES6_sims : data file results for ES6
  - ES7_sims : data file results for ES7
  - ES8_sims : data file results for ES8
- PD1_block : folder for all model output from WT
  - all_PD1_block_sims : contains simulation output for all ten thousand PD1 blockade simulations
  - ES1_sims : data file results for ES1
  - ES2_sims : data file results for ES2
  - ES3_sims : data file results for ES3
  - ES4_sims : data file results for ES4
  - ES5_sims : data file results for ES5
  - ES6_sims : data file results for ES6
  - ES7_sims : data file results for ES7
  - ES8_sims : data file results for ES8