Thesis.tex

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% Template for Doctoral Theses at Uppsala %
% University. The template is based on    %
% the layout and typography used for      %
% dissertations in the Acta Universitatis %
% Upsaliensis series                      %
% Ver 4.0.1 - 2008-11-03                  %
%                                         %
% Publishing & Graphic Services           %
% espik@ub.uu.se                          %
%                                         %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


\documentclass[11pt,a4paper,twoside, openright]{book} % Default font 11pt, A4, all pages are printed the same, new chapter always begins on a right-hand page.

% Package import
% Language, diacritics and hyphenation
\usepackage[swedish,english]{babel} % Use English and Swedish languages. English default. English hyphenation.
\usepackage[latin1]{inputenc} % Unix users should include this package instead of ansinew or applemac for correct handling of diacritics.
%\usepackage[applemac]{inputenc} % Macintosh users should include this package instead of ansinew or latin1 for correct handling of diacritics.
%\usepackage[ansinew]{inputenc} % % Windows users should include this package instead of applemac or latin1 for correct handling of diacritics.
\usepackage[T1]{fontenc}% Enables the use of 8-bit characters and å, ä, ö can be typed as å, ä, ö instead of the corresponding commands.

% Page elements
\usepackage{mathptmx} % Default font for dissertations is Times.
%\usepackage{times} % Default font for dissertations is Times.
%\usepackage{fourier} % If mathematics don't display well using Times, then use Fourier.
%\usepackage{helvet} % Default sans-serif font.
%\usepackage{courier}% Default typewriter (monotype) font.
\usepackage[OT2,OT1]{fontenc}
\def\Sha{{\fontencoding{OT2}\selectfont SH}}

%\usepackage{mathpazo}
\usepackage{Thesis} % This package is specific for theses written at Uppsala University. Modifications to the classfile and the document can be found here.
\ifpdf
   \usepackage[pdftex]{graphicx}
  \else
    \usepackage[dvips]{graphicx}
\fi % Used for figures
\usepackage{booktabs} % Produces good three line tables which is the standard tabel format for disserations.

%\usepackage{mathpazo}
%\usepackage{mathrsfs}
\usepackage{amsmath}
\usepackage{amssymb}
%\usepackage{euler}
\usepackage{eucal}
% This gives me a reasonable looking mathscr font for fourier transforms
\DeclareMathAlphabet{\mathscr}{OMS}{pzc}%
                                 {m}{it}
\usepackage{float}
\usepackage[colorlinks=true, urlcolor=black, pagecolor=black, linkcolor=black,
citecolor=black, filecolor=black, menucolor=black,
pdfpagelabels,bookmarksnumbered=true,plainpages=false]{hyperref} % Use this package to produce
                               % links in the electronic version of the
                               % document. All hyperlinks are black. Page view
                               % is set to Fit Width and page layout is set to
                               % display the document spread.  Make page
                               % anchors using the formatted form of the page
                               % number.  Set PDF page labels; i.e., write the
                               % value of \thepage to the PDF file so that
                               % Acrobat Reader can display the page number as
                               % (say) 'ii (4 of 40)' rather than simply '4 of
                               % 40'.
\usepackage{algorithmic}
\usepackage{algorithm}
\numberwithin{algorithm}{chapter}


% Bibliographic information
\input{BiblioInfo.tex} % This file should be edited by the author.

\begin{document}
\frontmatter
    %\frontmatterMonograph % Monograph authors use this front matter 
    \frontmatterCS % Authors of Comprehensive Summaries use this front matter 
    % Creates the front matter (title page(s), abstract, list of papers)
    % for either a Comprehensive Summary or a Monograph.
    
    \tableofcontents

    \input{abbreviations}

    % Optional tables
    %\listoftables
    %\listoffigures

\mainmatter
    % This includes the "Instruction", "Problem and Solutions" and "Example"
    % files. After reading it, remove it from Thesis.tex. 
\input{introduction}
\input{ultrafast_sources}
\input{Fourier_Theory/fourier_theory}
\input{Diffraction_Theory/diffraction_theory}
\input{Image_Reconstruction/image_reconstruction}
\input{future_perspectives}
\input{summary_in_swedish}
\input{acknowledgements}


\input{author_contributions}
%    \input{Instruction.tex}
%    \input{ProblemsAndSolutions}
%    \input{Example.tex}
    
	% Include your chapters here.
    %\input{Introduction.tex}


\backmatter

    % References
    % No restriction is set to the reference styles
    % Save your references in References.bib
%    \nocite{*} % Remove this for your own citations
    \bibliographystyle{plain}
%    \bibliography{References}
    \bibliography{FilipeMaia}

\end{document}