diff --git a/Dockerfile b/Dockerfile index 2626e58..ce9b970 100644 --- a/Dockerfile +++ b/Dockerfile @@ -75,6 +75,7 @@ ENV LD_LIBRARY_PATH /usr/local/lib:$LD_LIBRARY_PATH ENV HDF5_DIR /usr/local/ RUN pip install --upgrade pip && pip install \ + setuptools==33.1.1 \ cython \ numpy \ pyomo \ @@ -82,7 +83,8 @@ RUN pip install --upgrade pip && pip install \ matplotlib \ tables \ pandas \ - future + future \ + && pip install git+https://github.com/FRED-2/Fred2@master #installing optitype form git repository (version Dec 09 2015) and wirtig config.ini RUN git clone https://github.com/FRED-2/OptiType.git \ @@ -119,7 +121,7 @@ RUN hg clone https://bitbucket.org/sebastian_boegel/seq2hla \ && chmod 777 /usr/local/bin/seq2hla/seq2HLA.py #Fred2 -RUN pip install --upgrade pip && pip install git+https://github.com/FRED-2/Fred2@master +#RUN pip install --upgrade pip && pip install git+https://github.com/FRED-2/Fred2@master #set envirnomental variables for prediction methods