From d6a1cac771aa83787264dc84eb965cd210d2db11 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 19 Jan 2024 16:27:43 +1100 Subject: [PATCH 01/43] Tidy up users and token handling Signed-off-by: Steve Cassidy --- .../authentication/cluster_card.tsx | 2 +- src/native_hooks.ts | 4 +- src/users.ts | 115 +++++++++--------- 3 files changed, 58 insertions(+), 63 deletions(-) diff --git a/src/gui/components/authentication/cluster_card.tsx b/src/gui/components/authentication/cluster_card.tsx index 2185af816..d9f57f5b9 100644 --- a/src/gui/components/authentication/cluster_card.tsx +++ b/src/gui/components/authentication/cluster_card.tsx @@ -95,7 +95,7 @@ function UserSwitcher(props: UserSwitcherProps) { props.listing_id ); console.log( - 'awaiting getTokenInfoForCluster() returned', + 'awaiting getTokenContentsForCluster() returned', token_contents ); props.setToken(token_contents); diff --git a/src/native_hooks.ts b/src/native_hooks.ts index 695077ea8..b6762b7d1 100644 --- a/src/native_hooks.ts +++ b/src/native_hooks.ts @@ -22,7 +22,7 @@ import {App as CapacitorApp} from '@capacitor/app'; import {getSyncableListingsInfo} from './databaseAccess'; -import {setTokenForCluster, getTokenContentsForCluster} from './users'; +import {setTokenForCluster} from './users'; import {reprocess_listing} from './sync/process-initialization'; interface TokenURLObject { @@ -72,8 +72,6 @@ function processUrlPassedToken(token_obj: TokenURLObject) { return listing_id; }) .then(async listing_id => { - const token = await getTokenContentsForCluster(listing_id); - console.debug('token is', token); reprocess_listing(listing_id); }) .catch(err => { diff --git a/src/users.ts b/src/users.ts index 531b1e5b4..7829f53ef 100644 --- a/src/users.ts +++ b/src/users.ts @@ -36,7 +36,6 @@ import { JWTTokenInfo, JWTTokenMap, } from 'faims3-datamodel'; -import {LOCALLY_CREATED_PROJECT_PREFIX} from './sync/new-project'; import {RecordMetadata} from 'faims3-datamodel'; import {logError} from './logging'; @@ -50,41 +49,34 @@ interface TokenInfo { pubkey: KeyLike; } -export const ADMIN_ROLE = 'admin'; - -export async function getFriendlyUserName( - project_id: ProjectID -): Promise { - const doc = await active_db.get(project_id); - if (doc.friendly_name !== undefined) { - return doc.friendly_name; - } - if (doc.username !== undefined && doc.username !== null) { - return doc.username; - } - const token_contents = await getTokenContentsForCluster( - split_full_project_id(project_id).listing_id - ); - if (token_contents === undefined) { - return 'Anonymous User'; - } - return token_contents.name ?? token_contents.username; -} - +/** + * Get the current logged in user identifier for this project + * - used in two places: + * - when we add a record, to fill the `updated_by` field + * - when we delete a record, to store in the `created_by` field of the deleted revision + * @param project_id current project identifier + * @returns a promise resolving to the user identifier + */ export async function getCurrentUserId(project_id: ProjectID): Promise { - const doc = await active_db.get(project_id); - if (doc.username !== undefined && doc.username !== null) { - return doc.username; - } + // look in the stored token for the project's server, this will + // get the current logged in username const token_contents = await getTokenContentsForCluster( split_full_project_id(project_id).listing_id ); + // otherwise we don't know who this is (probably should not happen given the callers) if (token_contents === undefined) { return 'Anonymous User'; } return token_contents.username; } +/** + * Store a token for a server (cluster) + * @param token new authentication token + * @param pubkey token public key + * @param pubalg token pubkey algorithm + * @param cluster_id server identifier that this token is for + */ export async function setTokenForCluster( token: string, pubkey: string, @@ -118,6 +110,15 @@ export async function setTokenForCluster( } } +/** + * Add a token to an auth object or create a new one + * @param token auth token + * @param pubkey public key + * @param pubalg pubkey algorithm + * @param cluster_id server identifier + * @param current_doc current auth doc if any + * @returns a promise resolving to a new or updated auth document + */ async function addTokenToDoc( token: string, pubkey: string, @@ -251,36 +252,30 @@ async function getUsernameFromToken( return (await parseToken(token, keyobj)).username; } -async function getTokenInfoForSubDoc( - token_details: JWTTokenInfo -): Promise { - const pubkey = await importSPKI(token_details.pubkey, token_details.pubalg); - return { - token: token_details.token, - pubkey: pubkey, - }; -} - -async function getCurrentTokenInfoForDoc( - doc: LocalAuthDoc -): Promise { - const username = doc.current_username; - // console.debug('Current username', username, doc); - return await getTokenInfoForSubDoc(doc.available_tokens[username]); -} - -export async function getTokenInfoForCluster( +async function getTokenInfoForCluster( cluster_id: string ): Promise { try { const doc = await local_auth_db.get(cluster_id); - return await getCurrentTokenInfoForDoc(doc); + const username = doc.current_username; + const token_details = doc.available_tokens[username]; + const pubkey = await importSPKI(token_details.pubkey, token_details.pubalg); + return { + token: token_details.token, + pubkey: pubkey, + }; } catch (err) { console.warn('Token not found for:', cluster_id, err); return undefined; } } +/** + * Get the content of the current auth token for a server + * - used in UI login panel to get username, roles etc. + * @param cluster_id server identity + * @returns Expanded contents of the current auth token + */ export async function getTokenContentsForCluster( cluster_id: string ): Promise { @@ -365,6 +360,11 @@ function splitCouchDBRole(couch_role: string): SplitCouchDBRole | undefined { }; } +/** + * Is the current user a cluster admin? + * @param cluster_id server identifier + * @returns true if the current user has cluster admin permissions + */ export async function isClusterAdmin(cluster_id: string): Promise { const token_contents = await getTokenContentsForCluster(cluster_id); if (token_contents === undefined) { @@ -379,9 +379,6 @@ export async function shouldDisplayProject( full_proj_id: ProjectID ): Promise { const split_id = split_full_project_id(full_proj_id); - if (split_id.listing_id === LOCALLY_CREATED_PROJECT_PREFIX) { - return true; - } const is_admin = await isClusterAdmin(split_id.listing_id); if (is_admin) { return true; @@ -404,34 +401,34 @@ export async function shouldDisplayRecord( ): Promise { const split_id = split_full_project_id(full_proj_id); const user_id = await getCurrentUserId(full_proj_id); - if (split_id.listing_id === LOCALLY_CREATED_PROJECT_PREFIX) { - // console.info('See record as local project', record_metadata.record_id); - return true; - } if (record_metadata.created_by === user_id) { - // console.info('See record as user created', record_metadata.record_id); return true; } const is_admin = await isClusterAdmin(split_id.listing_id); if (is_admin) { - // console.info('See record as cluster admin', record_metadata.record_id); return true; } const roles = await getUserProjectRolesForCluster(split_id.listing_id); if (roles === undefined) { - // console.info('Not see record as not in cluster', record_metadata.record_id); return false; } for (const role in roles) { - if (role === split_id.project_id && roles[role].includes(ADMIN_ROLE)) { - // console.info('See record as notebook admin', record_metadata.record_id); + if ( + role === split_id.project_id && + roles[role].includes(CLUSTER_ADMIN_GROUP_NAME) + ) { return true; } } - // console.info('Not see record hit fallback', record_metadata.record_id); return false; } + +/** + * Find the default login token if we have one + * - called in App.tsx to get an initial token for the app + * @returns current login token for default server, if present + */ export async function getTokenContentsForRouting(): Promise< TokenContents | undefined > { From 3b94694abeff26c5f3453761ad97b0ad2c12601e Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 19 Jan 2024 16:29:19 +1100 Subject: [PATCH 02/43] Remove unused code and tidy Signed-off-by: Steve Cassidy --- src/context/store.tsx | 6 +- src/sync/databases.ts | 58 ------------------- src/sync/new-project.ts | 122 ---------------------------------------- 3 files changed, 3 insertions(+), 183 deletions(-) delete mode 100644 src/sync/new-project.ts diff --git a/src/context/store.tsx b/src/context/store.tsx index 8542124fd..ced8a1ed7 100644 --- a/src/context/store.tsx +++ b/src/context/store.tsx @@ -193,7 +193,7 @@ const StateProvider = (props: any) => { useEffect(() => { initialize() - .then(() => + .then(() => { setTimeout( () => dispatch({ @@ -201,8 +201,8 @@ const StateProvider = (props: any) => { payload: undefined, }), 10000 - ) - ) + ); + }) .catch(err => { console.log('Could not initialize: ', err); dispatch({ diff --git a/src/sync/databases.ts b/src/sync/databases.ts index 5d3b8a518..74bd32b09 100644 --- a/src/sync/databases.ts +++ b/src/sync/databases.ts @@ -184,64 +184,6 @@ export async function get_default_instance(): Promise { return default_instance; } -let default_projects_db: null | ConnectionInfo = null; - -export async function get_base_connection_info( - listing_object: ListingsObject -): Promise { - if (default_projects_db === null) { - try { - // Normal case of a single DEFAULT listing in the directory - const possibly_corrupted_instance = await directory_db.local.get( - DEFAULT_LISTING_ID - ); - return (default_projects_db = materializeConnectionInfo( - directory_connection_info, - possibly_corrupted_instance.projects_db - )); - } catch (err: any) { - // Missing when directory_db has NOTHING in it - // i.e. current FAIMS app doesn't have a directory - // this is usually because it's the server, not the app. - if (err.message !== 'missing') { - // Other DB error - throw err; - } - - const nullExcept = (val: T | undefined | null, err: any): T => { - if (val === null || val === undefined) { - throw err; - } - return val; - }; - - // If running in server mode - // the listings object MUST have all the connection properties - return { - proto: nullExcept( - listing_object.projects_db?.proto, - 'Server misconfigured: Missing proto' - ), - host: nullExcept( - listing_object.projects_db?.host, - 'Server misconfigured: Missing host' - ), - port: nullExcept( - listing_object.projects_db?.port, - 'Server misconfigured: Missing port' - ), - lan: listing_object.projects_db?.lan, - db_name: nullExcept( - listing_object.projects_db?.db_name, - 'Server misconfigured: Missing db_name' - ), - auth: listing_object.projects_db?.auth, - }; - } - } - return default_projects_db; -} - /** * @param prefix Name to use to run new PouchDB(prefix + POUCH_SEPARATOR + id), objects of the same type have the same prefix * @param local_db_id id is per-object of type, to discriminate between them. i.e. a project ID diff --git a/src/sync/new-project.ts b/src/sync/new-project.ts deleted file mode 100644 index 836480c55..000000000 --- a/src/sync/new-project.ts +++ /dev/null @@ -1,122 +0,0 @@ -/* - * Copyright 2021, 2022 Macquarie University - * - * Licensed under the Apache License Version 2.0 (the, "License"); - * you may not use, this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing software - * distributed under the License is distributed on an "AS IS" BASIS - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND either express or implied. - * See, the License, for the specific language governing permissions and - * limitations under the License. - * - * Filename: new-project.ts - * Description: - * TODO - */ -import {v4 as uuidv4} from 'uuid'; -import {ListingsObject, ProjectID, NonUniqueProjectID} from 'faims3-datamodel'; - -import {directory_db, ensure_local_db, projects_dbs} from './databases'; -import {activate_project} from './process-initialization'; -import {logError} from '../logging'; - -export const LOCALLY_CREATED_PROJECT_PREFIX = 'locallycreatedproject'; - -export async function request_allocation_for_project(project_id: ProjectID) { - console.debug(`Requesting allocation for ${project_id}`); - throw Error('not implemented yet'); -} - -/* - * This creates the project databases which are needed locally. This does not - * set up the remote databases, that will be the responsibility of other - * systems. - * - * The process is: - * 1. Create a listing for local-only projects (if it doesn't exist). - * 2. Create the projects_db for that new listing (if it doesn't exist). - * 3. Generate a new NonUniqueProjectID (uuidv4) - * 4. Activate the project (to check for local duplicates) - * 5. Create new meta/data db - * 6. Return new project id (for further usage) - */ -export async function create_new_project_dbs(name: string): Promise { - // Get the local-only listing - console.debug('Creating new project', name); - const listing = await ensure_locally_created_project_listing(); - console.debug('Checked locally created listing'); - const projects_db = ensure_locally_created_projects_db(listing._id); - console.debug('Got locally created projects_db'); - - // create the new project - const new_project_id = generate_non_unique_project_id(); - const creation_time = new Date(); - const project_object = { - _id: new_project_id, - name: name, - status: 'local_draft', - created: creation_time.toISOString(), - last_updated: creation_time.toISOString(), - }; - await projects_db.local.put(project_object); - console.debug('Created new project', new_project_id); - - const active_id = await activate_project( - listing._id, - new_project_id, - null, - null, - false - ); - console.debug('Activated new project', new_project_id); - - return active_id; -} - -function generate_non_unique_project_id(): NonUniqueProjectID { - return 'proj-' + uuidv4(); -} - -export async function ensure_locally_created_project_listing(): Promise { - try { - return await directory_db.local.get(LOCALLY_CREATED_PROJECT_PREFIX); - } catch (err: any) { - if (err.status === 404) { - console.debug('Creating local-only listing'); - const listing_object = { - _id: LOCALLY_CREATED_PROJECT_PREFIX, - name: 'Locally Created Projects', - description: - 'Projects created on this device (have not been submitted).', - local_only: true, - auth_mechanisms: {}, // No auth needed, nor allowed - }; - try { - await directory_db.local.put(listing_object); - return listing_object; - } catch (err: any) { - // if we get here, then the document has been created by another - // call to this function so let's just return this listing object - return listing_object; - } - } else { - logError('Failed to create locally created projects listing'); - throw err; - } - } -} - -function ensure_locally_created_projects_db(projects_db_id: string) { - const [, local_projects_db] = ensure_local_db( - 'projects', - projects_db_id, - true, - projects_dbs, - true - ); - return local_projects_db; -} From b435babfb8272354d278758e96af1da0c25457ce Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 19 Jan 2024 16:29:49 +1100 Subject: [PATCH 03/43] remove ref to locally created projects Signed-off-by: Steve Cassidy --- src/gui/pages/signin.tsx | 5 ----- 1 file changed, 5 deletions(-) diff --git a/src/gui/pages/signin.tsx b/src/gui/pages/signin.tsx index 68f22d39f..d485e0179 100644 --- a/src/gui/pages/signin.tsx +++ b/src/gui/pages/signin.tsx @@ -26,7 +26,6 @@ import ClusterCard from '../components/authentication/cluster_card'; import * as ROUTES from '../../constants/routes'; import {ListingInformation} from 'faims3-datamodel'; import {getSyncableListingsInfo} from '../../databaseAccess'; -import {ensure_locally_created_project_listing} from '../../sync/new-project'; import {logError} from '../../logging'; type SignInProps = { @@ -38,10 +37,6 @@ export function SignIn(props: SignInProps) { const breadcrumbs = [{link: ROUTES.INDEX, title: 'Home'}, {title: 'Sign In'}]; useEffect(() => { - const getlocalist = async () => { - await ensure_locally_created_project_listing(); - }; - getlocalist(); getSyncableListingsInfo().then(setListings).catch(logError); }, []); From acbe93cf9b693fb76bf529d68334a5e7267d9b81 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 19 Jan 2024 17:32:57 +1100 Subject: [PATCH 04/43] Remove unused route for signin-return (was for oauth) Signed-off-by: Steve Cassidy --- src/App.tsx | 5 -- src/constants/routes.tsx | 1 - src/gui/pages/signin-return.tsx | 136 -------------------------------- 3 files changed, 142 deletions(-) delete mode 100644 src/gui/pages/signin-return.tsx diff --git a/src/App.tsx b/src/App.tsx index 87dc2377c..992d9fcc8 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -25,7 +25,6 @@ import * as ROUTES from './constants/routes'; import {PrivateRoute} from './constants/privateRouter'; import Index from './gui/pages'; import {SignIn} from './gui/pages/signin'; -import {SignInReturnLoader} from './gui/pages/signin-return'; import AboutBuild from './gui/pages/about-build'; import Workspace from './gui/pages/workspace'; import NoteBookList from './gui/pages/notebook_list'; @@ -93,10 +92,6 @@ export default function App() { } /> - ; - } else { - const [putResult, setPutResult] = useState(false as boolean | {error: any}); - const setPutError = (err: any) => setPutResult({error: err}); - useEffect(() => { - // Array to ensure these closures reference cancelled, instead of copy. - const cancelled = [false]; - // This is a 2-step process: - // while this process is happening, any render calls to this react element - // cause a CircularProgress to be rendered (see below) (when putResult == false) - // If any errors occur, they are propagated to the state using setPutError, - // which are then rendered as a redirect and alert - // Once both steps are completed, the url in the ?state= query parameter - // is what the user is redirected to. - local_auth_db.get(state_parsed.listing_id).then(auth_obj => { - if (cancelled[0]) { - return; - } - local_auth_db - .put({ - ...auth_obj, - dc_token: code_parsed, - }) - .then(() => { - if (cancelled[0]) { - return; - } - setPutResult(true); - }, setPutError); - }, setPutError); - - return () => { - cancelled[0] = true; - }; - }); - if (putResult === false) { - // Still loading the local DB - return ; - } else if (putResult !== true) { - // Error occurred - dispatch({ - type: ActionType.ADD_ALERT, - payload: { - message: `Error: Redirected from authentication provider, for FAIMS Cluster ${state_parsed.listing_id}, but no said FAIMS Cluster is known`, - severity: 'error', - }, - }); - // scroll to top of page, seems to be needed on mobile devices - window.scrollTo(0, 0); - return ; - } else { - // Working - window.scrollTo(0, 0); - return ; - } - } -} From e2e76eedd7541f339b19b999ae0e18aaf5bd02f0 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 19 Jan 2024 17:33:26 +1100 Subject: [PATCH 05/43] missed call in refactor fixed Signed-off-by: Steve Cassidy --- src/users.ts | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/src/users.ts b/src/users.ts index 7829f53ef..cef20901e 100644 --- a/src/users.ts +++ b/src/users.ts @@ -24,7 +24,7 @@ import {jwtVerify, KeyLike, importSPKI} from 'jose'; import {CLUSTER_ADMIN_GROUP_NAME, BUILT_LOGIN_TOKEN} from './buildconfig'; -import {active_db, local_auth_db} from './sync/databases'; +import {local_auth_db} from './sync/databases'; import {reprocess_listing} from './sync/process-initialization'; import { ClusterProjectRoles, @@ -33,7 +33,6 @@ import { split_full_project_id, TokenContents, LocalAuthDoc, - JWTTokenInfo, JWTTokenMap, } from 'faims3-datamodel'; import {RecordMetadata} from 'faims3-datamodel'; @@ -228,8 +227,8 @@ export async function getAllUsersForCluster( const token_contents = []; const doc = await local_auth_db.get(cluster_id); for (const token_details of Object.values(doc.available_tokens)) { - const token_info = await getTokenInfoForSubDoc(token_details); - token_contents.push(await parseToken(token_info.token, token_info.pubkey)); + const pubkey = await importSPKI(token_details.pubkey, token_details.pubalg); + token_contents.push(await parseToken(token_details.token, pubkey)); } return token_contents; } @@ -423,7 +422,6 @@ export async function shouldDisplayRecord( return false; } - /** * Find the default login token if we have one * - called in App.tsx to get an initial token for the app From 42821c80f42eb04c1a58b9994aa8d04e0753f15f Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Wed, 24 Jan 2024 11:50:24 +1100 Subject: [PATCH 06/43] Get database initialisation right Signed-off-by: Steve Cassidy --- src/databaseAccess.tsx | 6 +- .../components/authentication/login_form.tsx | 8 +- src/projectMetadata.ts | 7 +- src/sync/connection.ts | 17 +- src/sync/events.ts | 3 +- src/sync/process-initialization.ts | 618 +++++++----------- src/sync/state.ts | 16 +- src/users.ts | 1 + 8 files changed, 274 insertions(+), 402 deletions(-) diff --git a/src/databaseAccess.tsx b/src/databaseAccess.tsx index af388c67a..aeae0d794 100644 --- a/src/databaseAccess.tsx +++ b/src/databaseAccess.tsx @@ -136,12 +136,8 @@ export async function getAllProjectList(): Promise { return output; } -export function listenProjectList( - listener: () => void, - error: (err: any) => void -): () => void { +export function listenProjectList(listener: () => void): () => void { events.on('project_update', listener); - console.warn(`${error} will never be called`); return () => { // Event remover events.removeListener('project_update', listener); diff --git a/src/gui/components/authentication/login_form.tsx b/src/gui/components/authentication/login_form.tsx index 18250c77c..ce9048af1 100644 --- a/src/gui/components/authentication/login_form.tsx +++ b/src/gui/components/authentication/login_form.tsx @@ -45,7 +45,6 @@ export function LoginButton(props: LoginButtonProps) { window.addEventListener( 'message', async event => { - console.log('Received token for:', props.listing_id); await setTokenForCluster( event.data.token, event.data.pubkey, @@ -60,12 +59,7 @@ export function LoginButton(props: LoginButtonProps) { props.setToken(token); reprocess_listing(props.listing_id); }) - .catch(err => { - console.warn( - 'Failed to get token for: ', - props.listing_id, - err - ); + .catch(() => { props.setToken(undefined); }); }, diff --git a/src/projectMetadata.ts b/src/projectMetadata.ts index 2da7c555a..a033bbcfa 100644 --- a/src/projectMetadata.ts +++ b/src/projectMetadata.ts @@ -53,8 +53,11 @@ export async function getProjectMetadata( } return doc.metadata; } catch (err) { - console.warn('failed to find metadata', err); - throw Error('failed to find metadata'); + // this isn't an error, the metadata just has no value + // so return a default value of empty/false + return ''; + // console.warn('failed to find metadata', err); + // throw Error('failed to find metadata'); } } diff --git a/src/sync/connection.ts b/src/sync/connection.ts index 016caf190..3fc6ff885 100644 --- a/src/sync/connection.ts +++ b/src/sync/connection.ts @@ -132,14 +132,21 @@ export function ConnectionInfo_create_pouch( //opts.keepalive = true; return PouchDB.fetch(url, opts); }; - return new PouchDB( - encodeURIComponent(connection_info.proto) + + let db_url: string; + if (connection_info.base_url) { + if (connection_info.base_url.endsWith('/')) + db_url = connection_info.base_url + connection_info.db_name; + else db_url = connection_info.base_url + '/' + connection_info.db_name; + } else { + db_url = + encodeURIComponent(connection_info.proto) + '://' + encodeURIComponent(connection_info.host) + ':' + encodeURIComponent(connection_info.port) + '/' + - encodeURIComponent(connection_info.db_name), - pouch_options - ); + encodeURIComponent(connection_info.db_name); + } + + return new PouchDB(db_url, pouch_options); } diff --git a/src/sync/events.ts b/src/sync/events.ts index 6bec96026..a6a9b55d1 100644 --- a/src/sync/events.ts +++ b/src/sync/events.ts @@ -41,7 +41,7 @@ export class DebugEmitter extends EventEmitter { export const events: DirectoryEmitter = new DebugEmitter(); events.setMaxListeners(100); // Default is 10, but that is soon exceeded with multiple watchers of a single project -type ProjectEventInfo = [ListingsObject, ExistingActiveDoc, ProjectObject]; +type ProjectEventInfo = [ExistingActiveDoc, ProjectObject]; export interface DirectoryEmitter extends EventEmitter { /** @@ -180,7 +180,6 @@ export interface DirectoryEmitter extends EventEmitter { ): boolean; emit( event: 'project_error', - listing: ListingsObject, active: ExistingActiveDoc, err: unknown ): boolean; diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index ace6b9821..f26366bd5 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -24,19 +24,14 @@ import { split_full_project_id, NonUniqueProjectID, resolve_project_id, + ActiveDoc, } from 'faims3-datamodel'; -import { - ConnectionInfo, - PossibleConnectionInfo, - ListingsObject, - ProjectObject, -} from 'faims3-datamodel'; +import {ConnectionInfo, ListingsObject, ProjectObject} from 'faims3-datamodel'; import {logError} from '../logging'; import {getTokenForCluster} from '../users'; import { ConnectionInfo_create_pouch, - materializeConnectionInfo, throttled_ping_sync_up, throttled_ping_sync_down, ping_sync_error, @@ -51,7 +46,6 @@ import { ensure_local_db, ensure_synced_db, ExistingActiveDoc, - get_default_instance, metadata_dbs, projects_dbs, setLocalConnection, @@ -59,9 +53,6 @@ import { import {events} from './events'; import {createdListings, createdProjects} from './state'; -const METADATA_DBNAME_PREFIX = 'metadata-'; -const DATA_DBNAME_PREFIX = 'data-'; - export async function update_directory( directory_connection_info: ConnectionInfo ) { @@ -186,13 +177,6 @@ export async function update_directory( } ping_sync_error(); }; - //const directory_complete = (info: any) => { - // console.debug('Directory sync complete', info); - //}; - //const directory_change = (info: any) => { - // console.debug('Directory sync change', info); - // throttled_ping_sync_down(); - //}; const directory_paused = ConnectionInfo_create_pouch( directory_connection_info @@ -227,7 +211,7 @@ export async function update_directory( * @param listing_id string: the id of the listing to reprocess */ export function reprocess_listing(listing_id: string) { - console.log('Reprocessing', listing_id); + console.log('reprocess_listing', listing_id); directory_db.local .get(listing_id) // If get succeeds, undelete/create: @@ -254,6 +238,7 @@ export function process_listing( delete_listing: boolean, listing: PouchDB.Core.ExistingDocument ) { + console.log('process_listing', delete_listing, listing); if (delete_listing) { // Delete listing from memory // DON'T MOVE THIS PAST AN AWAIT POINT @@ -282,66 +267,19 @@ function delete_listing_by_id(listing_id: ListingID) { } /** - * Creates or updates the local Databases for a listing, using the info - * The databases might already exist in browser local storage, but this - * creates the corresponding PouchDBs. - * - * Sync start/end events are emitted. - * - * Guaranteed to emit the listing_updated event before first suspend point - * @param listing_object Listing to update/create local DB + * get_projects_from_conductor - retrieve projects list from the server + * and update the local projects database + * @param listing_object - listing object representing the conductor instance */ -export async function update_listing( - listing_object: PouchDB.Core.ExistingDocument -) { - const listing_id = listing_object._id; - //const local_only = listing_object.local_only ?? false; - console.debug(`Processing listing id ${listing_id}`); - - const jwt_token = await getTokenForCluster(listing_id); - let jwt_conn: PossibleConnectionInfo = {}; - if (jwt_token === undefined) { - if (DEBUG_APP) { - console.debug('No JWT token for:', listing_id); - } - } else { - // if (DEBUG_APP) { - // console.debug('Using JWT token for:', listing_id); - // } - jwt_conn = { - jwt_token: jwt_token, - }; - } - - //const people_local_id = listing_object['people_db'] - // ? listing_id - // : DEFAULT_LISTING_ID; - - const projects_local_id = listing_object['projects_db'] - ? listing_id - : DEFAULT_LISTING_ID; - - const projects_connection = materializeConnectionInfo( - (await get_default_instance())['projects_db'], - listing_object['projects_db'], - jwt_conn - ); - - //const people_connection = materializeConnectionInfo( - // (await get_default_instance())['people_db'], - // listing_object['people_db'] - //); - - //const [people_did_change, people_local] = ensure_local_db( - // 'people', - // people_local_id, - // true, - // people_dbs - //); +async function get_projects_from_conductor(listing_object: ListingsObject) { + // sometimes there is no url... + if (listing_object.conductor_url === undefined) return; + // make sure there is a local projects database + // projects_did_change is true if this made a new database const [projects_did_change, projects_local] = ensure_local_db( 'projects', - listing_id, + listing_object._id, true, projects_dbs, true @@ -349,170 +287,128 @@ export async function update_listing( // These createdListings objects are created as soon as possible // (As soon as the DBs are available) - const old_value = createdListings?.[listing_id]; - createdListings[listing_id] = { + const old_value = createdListings?.[listing_object._id]; + createdListings[listing_object._id] = { listing: listing_object, projects: projects_local, - //people: people_local, }; // DON'T MOVE THIS PAST AN AWAIT POINT events.emit( 'listing_update', old_value === undefined ? ['create'] : ['update', old_value], projects_did_change, - false, //people_did_change, + false, listing_object._id ); - // Only sync active listings: To do so, get all active docs, - // then use that to select active listings from directory - const to_sync: {[key: string]: ExistingActiveDoc} = {}; - - if (projects_did_change) { - events.emit('projects_sync_state', true, listing_object); - - // local_projects_db.changes has been changed - // So we need to re-attach everything - - active_db - .changes({...default_changes_opts, since: 0}) - .on('change', info => { - if (info.doc === undefined) { - logError('Active doc changes has doc undefined'); - return undefined; - } - const split_id = split_full_project_id(info.doc._id); - const listing_id = split_id.listing_id; - const project_id = split_id.project_id; - console.debug('Active db listing id', listing_id); - console.debug('ActiveDB Info in update listing', info); - if (info.deleted) { - // Some listing deactivated: delete its local dbs and such - delete to_sync[listing_id]; - delete_listing_by_id(listing_id); - } else { - // Some listing activated - console.debug('info.id', info.id); - to_sync[info.id] = info.doc!; - // Need to fetch it first though. - projects_local.local - .get(project_id) - // If get succeeds, undelete/create: - .then( - existing_project => - process_project( - false, - listing_object, - to_sync[info.id], - projects_connection, - existing_project - ), - // Even for 404 errors, since the listing is active, it should exist - // so it's an error if it doesn't exist. - err => events.emit('listing_error', listing_id, err) - ); - } - return undefined; - }); - - // As with directory, when updates come through to the projects db, - // they are listened to from here: - + // get the remote data + const jwt_token = await getTokenForCluster(listing_object._id); + + console.debug('FETCH', listing_object.conductor_url); + const response = await fetch(`${listing_object.conductor_url}api/directory`, { + headers: { + Authorization: `Bearer ${jwt_token}`, + }, + }); + + const directory = await response.json(); + console.log('going to look at the directory', directory.length); + // make sure every project in the directory is stored in projects_local + for (let i = 0; i < directory.length; i++) { + const project_doc: ProjectObject = directory[i]; + console.debug('DIR inspecting', project_doc._id); + // is this project already in projects_local? projects_local.local - .changes({...default_changes_opts, since: 0}) - .on('change', async info => { - if (info.doc === undefined) { - logError('projects_local doc changes has doc undefined'); - return undefined; - } - if (info.id in to_sync) { - // Only active projects - // This can delete for deletion changes - process_project( - info.deleted || false, - listing_object, - to_sync[info.id], - projects_connection, - info.doc! - ); + .get(project_doc._id) + .then((existing_project: ProjectObject) => { + // do we have to update it? + if ( + existing_project.name !== project_doc.name || + existing_project.status !== project_doc.status + ) { + console.log('DIR updating', project_doc._id); + return projects_local.local.post({ + ...existing_project, + name: project_doc.name, + status: project_doc.status, + }); } - return undefined; }) - .on('error', err => { - events.emit('listing_error', listing_id, err); - ping_sync_error(); + .catch(err => { + if (err.name === 'not_found') { + console.debug('DIR storing', project_doc._id); + // we don't have this project, so store it + return projects_local.local.put(project_doc); + } }); } - //const people_pause = (message?: string) => () => { - // if (!people_did_change) return; - // console.debug('People settled for', listing_id, 'with message', message); - //}; + // TODO: how should we deal with projects that are removed from + // the remote directory - should we delete them here or offer another option + // what if there are unsynced records? - const projects_pause = (message?: string) => () => { - if (!projects_did_change) return; - console.debug('Projects settled for', listing_id, 'with message', message); - console.debug('Active project IDs in', listing_id, 'are', to_sync); - events.emit('projects_sync_state', false, listing_object); - }; + return directory; +} - //const [, people_remote] = ensure_synced_db( - // people_local_id, - // people_connection, - // people_dbs - //); - - //if (people_remote.remote !== null && people_remote.remote.connection !== null) { - // people_remote.remote.connection!.once('paused', people_pause('Sync')); - //} else { - // people_pause('No Sync')(); - //} - - const [, projects_remote] = ensure_synced_db( - projects_local_id, - projects_connection, - projects_dbs - ); +/** + * Creates or updates the local Databases for a listing, using the info + * The databases might already exist in browser local storage, but this + * creates the corresponding PouchDBs. + * + * Sync start/end events are emitted. + * + * Guaranteed to emit the listing_updated event before first suspend point + * @param listing_object Listing to update/create local DB + */ +export async function update_listing( + listing_object: PouchDB.Core.ExistingDocument +) { + const listing_id = listing_object._id; + console.debug(`Processing listing id ${listing_id}`); - if ( - projects_remote.remote !== null && - projects_remote.remote.connection !== null - ) { - projects_remote.remote.connection!.once('paused', projects_pause('Sync')); - projects_remote.remote - .connection!.on('active', () => { - console.debug('Projects sync started up again', listing_id); - throttled_ping_sync_down(); - }) - .on('denied', err => { - console.debug('Projects sync denied', listing_id, err); - ping_sync_denied(); - }) - //.on('complete', info => { - // console.debug('Projects sync complete', listing_id, info); - //}) - //.on('change', info => { - // console.debug('Projects sync change', listing_id, info); - // throttled_ping_sync_down(); - //}) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Projects sync waiting on auth', listing_id); - } else { - console.debug('Projects sync error', listing_id, err); - ping_sync_error(); - } - }); - } else { - projects_pause('No Sync')(); - } + // get the projects from remote and update our local db + const directory = await get_projects_from_conductor(listing_object); + + // TODO + // we now need to make any database connections that will be needed + // for the active projects + // for each active project, call process_project (I think) + // then check what if anything below here is still needed + + const active_projects = await get_active_projects(); + + active_projects.rows.forEach(info => { + if (info.doc === undefined) { + logError('Active doc changes has doc undefined'); + return undefined; + } + const split_id = split_full_project_id(info.doc._id); + const listing_id = split_id.listing_id; + const project_id = split_id.project_id; + const project_matches = directory.filter( + (project: ProjectObject) => project._id === project_id + ); + console.debug('ActiveDB listing id', listing_id); + console.debug('ActiveDB Info in update listing', info); + + if (project_matches) ensure_project_databases(info.doc, project_matches[0]); + // if not, this active project must be from another listing, so we can ignore here + }); + + // we are no longer syncing projects for this listing + events.emit('projects_sync_state', false, listing_object); } +/** + * activate_project - make this project active for the user on this device + * @param listing_id - listing_id where we find this project + * @param project_id - non-unique project id + * @param is_sync - should we sync records for this project (default true) + * @returns A promise resolving to the fully resolved project id (listing_id || project_id) + */ export async function activate_project( listing_id: string, project_id: NonUniqueProjectID, - username: string | null = null, - password: string | null = null, is_sync = true ): Promise { if (project_id.startsWith('_design/')) { @@ -522,92 +418,86 @@ export async function activate_project( throw Error(`Projects should not start with a underscore: ${project_id}`); } const active_id = resolve_project_id(listing_id, project_id); - try { - await active_db.get(active_id); + if (await project_is_active(active_id)) { console.debug('Have already activated', active_id); return active_id; - } catch (err: any) { + } else { console.debug('Activating', active_id); + const active_doc = { + _id: active_id, + listing_id: listing_id, + project_id: project_id, + username: '', // TODO these are not used and should be removed + password: '', + is_sync: is_sync, + is_sync_attachments: false, + }; + await active_db.put(active_doc); + + // this should happen here but we need to get the project object + // from somewhere + // await ensure_project_databases(active_doc, project_object); + + return active_id; + } +} + +async function get_active_projects() { + return await active_db.allDocs({include_docs: true}); +} + +async function project_is_active(id: string) { + try { + await active_db.get(id); + return true; + } catch (err: any) { if (err.status === 404) { - // TODO: work out a better way to do this - await active_db.put({ - _id: active_id, - listing_id: listing_id, - project_id: project_id, - username: username, - password: password, - is_sync: is_sync, - is_sync_attachments: false, - }); - return active_id; - } else { - throw err; + return false; } + // pass on any other error + throw err; } } /** - * Deletes or updates a project: If the project is newly synced (needs the local - * PouchDB data & metadata to be created) or has been removed + * Deletes a project * * Guaranteed to emit the project_updated event before first suspend point * - * @param delete Boolean: true to delete, false if to not be deleted + * @param active_doc an ActiveDoc object with connection info * @param project_object Project to delete/undelete */ -function process_project( - delete_proj: boolean, - listing: ListingsObject, - active_project: ExistingActiveDoc, - projects_db_connection: ConnectionInfo | null, +function delete_project( + active_doc: ExistingActiveDoc, project_object: ProjectObject ) { - console.log( - 'Processing project', - delete_proj, - listing, - active_project, - projects_db_connection, - project_object - ); - if (delete_proj) { - // Delete project from memory - const project_id = active_project.project_id; + console.log('Deleting project', active_doc, project_object); + // Delete project from memory + const project_id = active_doc.project_id; - if (metadata_dbs[project_id].remote?.connection !== null) { - metadata_dbs[project_id].local.removeAllListeners(); - metadata_dbs[project_id].remote!.connection!.cancel(); - } + if (metadata_dbs[project_id].remote?.connection !== null) { + metadata_dbs[project_id].local.removeAllListeners(); + metadata_dbs[project_id].remote!.connection!.cancel(); + } - if (data_dbs[project_id].remote?.connection !== null) { - data_dbs[project_id].local.removeAllListeners(); - data_dbs[project_id].remote!.connection!.cancel(); - } + if (data_dbs[project_id].remote?.connection !== null) { + data_dbs[project_id].local.removeAllListeners(); + data_dbs[project_id].remote!.connection!.cancel(); + } - delete metadata_dbs[active_project._id]; - delete data_dbs[active_project._id]; - delete createdProjects[active_project._id]; + delete metadata_dbs[active_doc._id]; + delete data_dbs[active_doc._id]; + delete createdProjects[active_doc._id]; - // DON'T MOVE THIS PAST AN AWAIT POINT - events.emit( - 'project_update', - ['delete'], - false, - false, - listing, - active_project, - project_object - ); - } else { - // DON'T MOVE THIS PAST AN AWAIT POINT - console.debug('check error', listing, active_project); - update_project( - listing, - active_project, - projects_db_connection, - project_object - ).catch(err => events.emit('project_error', listing, active_project, err)); - } + // DON'T MOVE THIS PAST AN AWAIT POINT + events.emit( + 'project_update', + ['delete'], + false, + false, + active_doc, + project_object + ); } /** @@ -618,34 +508,35 @@ function process_project( * Sync start/end events are emitted. * * Guaranteed to emit the project_updated event before first suspend point + * + * @param active_doc an ActiveDoc object with project connection info * @param project_object Project to update/create local DB */ -export async function update_project( - listing: ListingsObject, - active_project: ExistingActiveDoc, - projects_db_connection: ConnectionInfo | null, +export async function ensure_project_databases( + active_doc: ExistingActiveDoc, project_object: ProjectObject ): Promise { /** * Each project needs to know it's active_id to lookup the local * metadata/data databases. */ - const active_id = active_project._id; - console.debug('Processing project', active_id, active_project); + const active_id = active_doc._id; + console.debug('Ensure project databases', active_doc, project_object); + // get meta and data databases for the active project const [meta_did_change, meta_local] = ensure_local_db( 'metadata', active_id, - active_project.is_sync, + active_doc.is_sync, metadata_dbs, true ); const [data_did_change, data_local] = ensure_local_db( 'data', active_id, - active_project.is_sync, + active_doc.is_sync, data_dbs, - active_project.is_sync_attachments + active_doc.is_sync_attachments ); // These createdProjects objects are created as soon as possible @@ -653,120 +544,101 @@ export async function update_project( const old_value = createdProjects?.[active_id]; createdProjects[active_id] = { project: project_object, - active: active_project, + active: active_doc, meta: meta_local, data: data_local, }; + // DON'T MOVE THIS PAST AN AWAIT POINT events.emit( 'project_update', old_value === undefined ? ['create'] : ['update', old_value], data_did_change, meta_did_change, - listing, - active_project, + active_doc, project_object ); if (meta_did_change) { - events.emit( - 'meta_sync_state', - true, - listing, - active_project, - project_object - ); + events.emit('meta_sync_state', true, active_doc, project_object); } if (data_did_change) { - events.emit( - 'data_sync_state', - true, - listing, - active_project, - project_object - ); + events.emit('data_sync_state', true, active_doc, project_object); } const meta_pause = (message?: string) => () => { if (!meta_did_change) return; console.debug(`Metadata settled for ${active_id} (${message})`); - events.emit( - 'meta_sync_state', - false, - listing, - active_project, - project_object - ); + events.emit('meta_sync_state', false, active_doc, project_object); }; const data_pause = (message?: string) => () => { if (!data_did_change) return; console.debug(`Data settled for ${active_id} (${message})`); - events.emit( - 'data_sync_state', - false, - listing, - active_project, - project_object - ); + events.emit('data_sync_state', false, active_doc, project_object); }; + // Connect to remote databases + // If we must sync with a remote endpoint immediately, // do it here: (Otherwise, emit 'paused' anyway to allow // other parts of FAIMS to continue) - if (projects_db_connection !== null) { - // Defaults to the same couch as the projects db, but different database name: - const meta_connection_info = materializeConnectionInfo( - { - ...projects_db_connection, - db_name: METADATA_DBNAME_PREFIX + project_object._id, - }, - project_object.metadata_db - ); - const data_connection_info = materializeConnectionInfo( - { - ...projects_db_connection, - db_name: DATA_DBNAME_PREFIX + project_object._id, - }, - project_object.data_db - ); + const jwt_token = await getTokenForCluster(active_doc.listing_id); + + // SC: this little dance is because the db_name in PossibleConnectionObject + // which is the type of metadata_db in the project object is possibly + // undefined. This should really not be the case. + // TODO: make sure that all project objects have a proper db_name + let metadata_db_name; + if (project_object.metadata_db?.db_name) + metadata_db_name = project_object.metadata_db.db_name; + else metadata_db_name = 'metadata-' + project_object._id; + + const meta_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: metadata_db_name, + ...project_object.metadata_db, + }; - const [, meta_remote] = ensure_synced_db( - active_id, - meta_connection_info, - metadata_dbs - ); + let data_db_name; + if (project_object.data_db?.db_name) + data_db_name = project_object.data_db.db_name; + else data_db_name = 'data-' + project_object._id; - if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { - meta_remote.remote.connection!.once('paused', meta_pause('Sync')); - meta_remote.remote - .connection!.on('active', () => { - console.debug('Meta sync started up again', active_id); - throttled_ping_sync_down(); - }) - .on('denied', err => { - console.debug('Meta sync denied', active_id, err); - ping_sync_denied(); - }) - //.on('change', info => { - // console.debug('Meta sync change', active_id, info); - // throttled_ping_sync_down(); - //}) - //.on('complete', info => { - // console.debug('Meta sync complete', active_id, info); - //}) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Meta sync waiting on auth', active_id); - } else { - console.debug('Meta sync error', active_id, err); - ping_sync_error(); - } - }); - } else { - meta_pause('No Sync')(); - } + const data_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: data_db_name, + ...project_object.data_db, + }; + + console.log('update_project data connection', data_connection_info); + + const [, meta_remote] = ensure_synced_db( + active_id, + meta_connection_info, + metadata_dbs + ); + + if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { + meta_remote.remote.connection!.once('paused', meta_pause('Sync')); + meta_remote.remote + .connection!.on('active', () => { + console.debug('Meta sync started up again', active_id); + throttled_ping_sync_down(); + }) + .on('denied', err => { + console.debug('Meta sync denied', active_id, err); + ping_sync_denied(); + }) + .on('error', (err: any) => { + if (err.status === 401) { + console.debug('Meta sync waiting on auth', active_id); + } else { + console.debug('Meta sync error', active_id, err); + ping_sync_error(); + } + }); const [, data_remote] = ensure_synced_db( active_id, @@ -790,12 +662,6 @@ export async function update_project( console.debug('Data sync denied', active_id, err); ping_sync_denied(); }) - //.on('change', info => { - // console.debug('Data sync change', active_id, info); - //}) - //.on('complete', info => { - // console.debug('Data sync complete', active_id, info); - //}) .on('error', (err: any) => { if (err.status === 401) { console.debug('Data sync waiting on auth', active_id); diff --git a/src/sync/state.ts b/src/sync/state.ts index 629eed063..62e7ca3fa 100644 --- a/src/sync/state.ts +++ b/src/sync/state.ts @@ -143,6 +143,12 @@ export function register_sync_state(initializeEvents: DirectoryEmitter) { all_projects_updated && Array.from(projects_data_synced.values()).every(v => v); + console.log( + 'COMMON CHECK', + all_projects_updated, + !listings_updated, + listing_projects_synced + ); initializeEvents.emit('all_state'); }; @@ -178,7 +184,7 @@ export function register_sync_state(initializeEvents: DirectoryEmitter) { }); initializeEvents.on( 'project_update', - (type, data_changed, meta_changed, listing, active) => { + (type, data_changed, meta_changed, active) => { // Now we know we have to wait for the data/meta DB of a project // to, if not fully sync, then at least be created (But not if // *_changed == false, and no projects_sync_state triggers) @@ -188,20 +194,20 @@ export function register_sync_state(initializeEvents: DirectoryEmitter) { common_check(); } ); - initializeEvents.on('project_error', (listing, active, err) => { - console.debug('project_error info', listing, 'active', active, 'err', err); + initializeEvents.on('project_error', (active, err) => { + console.debug('project_error active', active, 'err', err); // Don't hold up other things waiting for it to not be an error: projects_meta_synced.set(active._id, true); projects_data_synced.set(active._id, true); common_check(); }); - initializeEvents.on('meta_sync_state', (syncing, listing, active) => { + initializeEvents.on('meta_sync_state', (syncing, active) => { projects_meta_synced.set(active._id, !syncing); common_check(); }); - initializeEvents.on('data_sync_state', (syncing, listing, active) => { + initializeEvents.on('data_sync_state', (syncing, active) => { projects_data_synced.set(active._id, !syncing); common_check(); diff --git a/src/users.ts b/src/users.ts index cef20901e..033d23bb1 100644 --- a/src/users.ts +++ b/src/users.ts @@ -82,6 +82,7 @@ export async function setTokenForCluster( pubalg: string, cluster_id: string ) { + if (token === undefined) throw Error('Token undefined in setTokenForCluster'); try { const doc = await local_auth_db.get(cluster_id); const new_doc = await addTokenToDoc(token, pubkey, pubalg, cluster_id, doc); From cf6baf14295e6d7018d5c425de9efb221a5e1771 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Thu, 1 Feb 2024 14:34:09 +1100 Subject: [PATCH 07/43] stub for removed code in soon to be removed code Signed-off-by: Steve Cassidy --- src/gui/components/project/CreateProjectCard.tsx | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/src/gui/components/project/CreateProjectCard.tsx b/src/gui/components/project/CreateProjectCard.tsx index 1685f4c6d..b7f50f551 100644 --- a/src/gui/components/project/CreateProjectCard.tsx +++ b/src/gui/components/project/CreateProjectCard.tsx @@ -47,7 +47,6 @@ import { getprojectform, } from './data/ComponentSetting'; import {setUiSpecForProject} from '../../../uiSpecification'; -import {create_new_project_dbs} from '../../../sync/new-project'; import { setProjectMetadata, getProjectMetadata, @@ -800,3 +799,8 @@ export default function CreateProjectCard(props: CreateProjectCardProps) { ); } + +// has been removed as will this whole module eventually +async function create_new_project_dbs(name: any) { + return ''; +} From ee55031171746614cfa45df8705882b108886a8a Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Thu, 1 Feb 2024 14:35:55 +1100 Subject: [PATCH 08/43] Add some colour to debug messages Signed-off-by: Steve Cassidy --- src/sync/events.ts | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/sync/events.ts b/src/sync/events.ts index a6a9b55d1..74102d8ba 100644 --- a/src/sync/events.ts +++ b/src/sync/events.ts @@ -32,7 +32,12 @@ export class DebugEmitter extends EventEmitter { } emit(event: string | symbol, ...args: unknown[]): boolean { if (DEBUG_APP) { - console.debug('FAIMS EventEmitter event', event, ...args); + console.log( + '%cFAIMS EventEmitter event', + 'background-color: red; color: white;', + event, + ...args + ); } return super.emit(event, ...args); } From 5157a5db5f97651c557c434b5d3041d0eb0c5211 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Thu, 1 Feb 2024 14:36:35 +1100 Subject: [PATCH 09/43] don't need to reload on activate now Signed-off-by: Steve Cassidy --- src/gui/components/notebook/settings/sync_switch.tsx | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/gui/components/notebook/settings/sync_switch.tsx b/src/gui/components/notebook/settings/sync_switch.tsx index 6a5571e93..34300a0f0 100644 --- a/src/gui/components/notebook/settings/sync_switch.tsx +++ b/src/gui/components/notebook/settings/sync_switch.tsx @@ -109,8 +109,8 @@ export default function NotebookSyncSwitch(props: NotebookSyncSwitchProps) { severity: 'error', }, }); - }) - .finally(() => location.reload()); + }); + //.finally(() => location.reload()); }; return ['published', 'archived'].includes(String(props.project_status)) ? ( From fdb9cfadaeaba932abaef15e1b29d860c363a510 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Thu, 1 Feb 2024 14:37:28 +1100 Subject: [PATCH 10/43] loading databases and activating projects properly Signed-off-by: Steve Cassidy --- src/sync/process-initialization.ts | 58 ++++++++++++++++++++++-------- 1 file changed, 44 insertions(+), 14 deletions(-) diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index f26366bd5..bacc1a366 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -24,7 +24,6 @@ import { split_full_project_id, NonUniqueProjectID, resolve_project_id, - ActiveDoc, } from 'faims3-datamodel'; import {ConnectionInfo, ListingsObject, ProjectObject} from 'faims3-datamodel'; import {logError} from '../logging'; @@ -41,7 +40,6 @@ import { active_db, data_dbs, default_changes_opts, - DEFAULT_LISTING_ID, directory_db, ensure_local_db, ensure_synced_db, @@ -369,12 +367,7 @@ export async function update_listing( // get the projects from remote and update our local db const directory = await get_projects_from_conductor(listing_object); - // TODO - // we now need to make any database connections that will be needed - // for the active projects - // for each active project, call process_project (I think) - // then check what if anything below here is still needed - + // for all active projects, ensure we have the right database connections const active_projects = await get_active_projects(); active_projects.rows.forEach(info => { @@ -422,7 +415,7 @@ export async function activate_project( console.debug('Have already activated', active_id); return active_id; } else { - console.debug('Activating', active_id); + console.debug('%cActivating', 'background-color: pink;', active_id); const active_doc = { _id: active_id, listing_id: listing_id, @@ -432,16 +425,53 @@ export async function activate_project( is_sync: is_sync, is_sync_attachments: false, }; - await active_db.put(active_doc); - - // this should happen here but we need to get the project object - // from somewhere - // await ensure_project_databases(active_doc, project_object); + const response = await active_db.put(active_doc); + if (response.ok) { + const project_object = await get_project_from_directory( + active_doc.listing_id, + project_id + ); + console.log( + '%cProject Object', + 'background-color: pink;', + project_object + ); + if (project_object) + await ensure_project_databases( + {...active_doc, _rev: response.rev}, + project_object + ); + else + throw Error( + `Unable to initialise databases for new active project ${project_id}` + ); + } else { + console.warn('Error saving new active document', response); + throw Error(`Unable to store new active project ${project_id}`); + } return active_id; } } +async function get_project_from_directory( + listing_id: ListingID, + project_id: ProjectID +) { + // look in the project databases for this project id + // and return the record from there + + if (listing_id in projects_dbs) { + const project_db = projects_dbs[listing_id]; + try { + const result = await project_db.local.get(project_id); + return result as ProjectObject; + } catch { + return undefined; + } + } +} + async function get_active_projects() { return await active_db.allDocs({include_docs: true}); } From bc3c61b5288a1ca0686afb581dbdac0a05088d0a Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Mon, 5 Feb 2024 12:02:05 +1100 Subject: [PATCH 11/43] Turn on pouchdb debug Signed-off-by: Steve Cassidy --- src/sync/index.ts | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/sync/index.ts b/src/sync/index.ts index b8b641d48..eb2802386 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -47,6 +47,9 @@ import {logError} from '../logging'; PouchDB.plugin(PouchDBFind); PouchDB.plugin(pouchdbDebug); +// turn on verbose pouch debugging +if (DEBUG_APP) PouchDB.debug.enable('*'); + /** * Allows the user to asynchronously await for any of listings_updated, * all_projects_updated, listing_projects_synced, all_meta_synced, From 200e769d1b15f0a2fda074cb46fb0fa6e8a1abab Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Mon, 5 Feb 2024 12:02:32 +1100 Subject: [PATCH 12/43] don't pause on startup - may trigger other bugs so WATCH OUT! Signed-off-by: Steve Cassidy --- src/context/store.tsx | 23 +++++++++++++++-------- 1 file changed, 15 insertions(+), 8 deletions(-) diff --git a/src/context/store.tsx b/src/context/store.tsx index ced8a1ed7..da7699a4a 100644 --- a/src/context/store.tsx +++ b/src/context/store.tsx @@ -194,14 +194,21 @@ const StateProvider = (props: any) => { useEffect(() => { initialize() .then(() => { - setTimeout( - () => - dispatch({ - type: ActionType.INITIALIZED, - payload: undefined, - }), - 10000 - ); + console.log('HERE GOES NOTHING'); + dispatch({ + type: ActionType.INITIALIZED, + payload: undefined, + }); + + // console.log('SETTING INIT TIMEOUT'); + // setTimeout( + // () => + // dispatch({ + // type: ActionType.INITIALIZED, + // payload: undefined, + // }), + // 10000 + // ); }) .catch(err => { console.log('Could not initialize: ', err); From 623f656cdf042dca0fbf1aa6a4f67f9126819c07 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 2 Mar 2024 17:44:10 +1100 Subject: [PATCH 13/43] catch up to main Signed-off-by: Steve Cassidy --- src/sync/process-initialization.ts | 36 +++++++++++++++++++++++++++++- 1 file changed, 35 insertions(+), 1 deletion(-) diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index bacc1a366..9eabaacee 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -187,7 +187,7 @@ export async function update_directory( options: {}, }; - console.debug('Setting up directory local connection'); + console.debug('%cSetting up directory local connection', 'background-color: cyan', directory_db); setLocalConnection({...directory_db, remote: directory_db.remote!}); directory_db.remote!.connection!.once('paused', directory_pause('Sync')); @@ -251,6 +251,7 @@ export function process_listing( } function delete_listing_by_id(listing_id: ListingID) { + console.debug('delete_listing_by_id', listing_id); // Delete listing from memory if (projects_dbs[listing_id]?.remote?.connection !== null) { projects_dbs[listing_id].local.removeAllListeners(); @@ -366,6 +367,39 @@ export async function update_listing( // get the projects from remote and update our local db const directory = await get_projects_from_conductor(listing_object); + const jwt_token = await getTokenForCluster(listing_id); + let jwt_conn: PossibleConnectionInfo = {}; + if (jwt_token === undefined) { + if (DEBUG_APP) { + console.debug('%cNo JWT token for:', 'background-color: cyan', listing_id); + } + } else { + if (DEBUG_APP) { + console.debug('%cUsing JWT token for:', 'background-color: cyan', listing_id); + } + jwt_conn = { + jwt_token: jwt_token, + }; + } + + //const people_local_id = listing_object['people_db'] + // ? listing_id + // : DEFAULT_LISTING_ID; + + const projects_local_id = listing_object['projects_db'] + ? listing_id + : DEFAULT_LISTING_ID; + + const projects_connection = materializeConnectionInfo( + (await get_default_instance())['projects_db'], + listing_object['projects_db'], + jwt_conn + ); + + //const people_connection = materializeConnectionInfo( + // (await get_default_instance())['people_db'], + // listing_object['people_db'] + //); // for all active projects, ensure we have the right database connections const active_projects = await get_active_projects(); From 151573492107a6d2e38bfd34198902b04e298568 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 2 Mar 2024 17:45:47 +1100 Subject: [PATCH 14/43] add .vite to ignore Signed-off-by: Steve Cassidy --- .gitignore | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 7a3b004b8..9a7fcb622 100644 --- a/.gitignore +++ b/.gitignore @@ -124,4 +124,6 @@ draft-storage local_auth # generated documentation -doc \ No newline at end of file +doc + +.vite \ No newline at end of file From 5e7ca8c94ef692b8a32313312a92f7352da472dd Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 2 Mar 2024 17:59:07 +1100 Subject: [PATCH 15/43] fix up merge Signed-off-by: Steve Cassidy --- src/sync/process-initialization.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index fabc3272a..6ec9c1041 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -25,7 +25,7 @@ import { NonUniqueProjectID, resolve_project_id, } from 'faims3-datamodel'; -import {ConnectionInfo, ListingsObject, ProjectObject} from 'faims3-datamodel'; +import {ProjectObject} from 'faims3-datamodel'; import {logError} from '../logging'; import {getTokenForCluster} from '../users'; From 2aa20c47191e153ead3bbb6bfc4b8596b59133dd Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Apr 2024 19:07:20 +1000 Subject: [PATCH 16/43] Remove unused code and fix calls Signed-off-by: Steve Cassidy --- src/sync/connection.ts | 10 +++++--- src/sync/index.ts | 1 - src/sync/process-initialization.ts | 39 ++++-------------------------- src/sync/sync-toggle.ts | 6 +---- src/users.ts | 10 ++------ 5 files changed, 14 insertions(+), 52 deletions(-) diff --git a/src/sync/connection.ts b/src/sync/connection.ts index 6c93848b8..df769d85e 100644 --- a/src/sync/connection.ts +++ b/src/sync/connection.ts @@ -24,9 +24,10 @@ import {PossibleConnectionInfo} from 'faims3-datamodel'; import * as _ from 'lodash'; export interface ConnectionInfo { - proto: string; - host: string; - port: number; + proto?: string; + host?: string; + port?: number; + base_url?: string; lan?: boolean; db_name: string; auth?: { @@ -147,13 +148,14 @@ export function ConnectionInfo_create_pouch( return PouchDB.fetch(url, opts); }; let db_url: string; + // if we have a base_url configured, make the connection url from that if (connection_info.base_url) { if (connection_info.base_url.endsWith('/')) db_url = connection_info.base_url + connection_info.db_name; else db_url = connection_info.base_url + '/' + connection_info.db_name; } else { db_url = - encodeURIComponent(connection_info.proto) + + encodeURIComponent(connection_info.proto || 'http') + '://' + encodeURIComponent(connection_info.host || 'localhost') + ':' + diff --git a/src/sync/index.ts b/src/sync/index.ts index 388c66816..cc63f31a9 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -201,7 +201,6 @@ export function listenProject( type: ['update', createdProjectsInterface] | ['delete'] | ['create'], meta_changed: boolean, data_changed: boolean, - _listing: unknown, active: ExistingActiveDoc ) => { if (DEBUG_APP) { diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index 6ec9c1041..1c3614fb3 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -189,7 +189,11 @@ export async function update_directory( options: {}, }; - console.debug('%cSetting up directory local connection', 'background-color: cyan', directory_db); + console.debug( + '%cSetting up directory local connection', + 'background-color: cyan', + directory_db + ); setLocalConnection({...directory_db, remote: directory_db.remote!}); directory_db.remote!.connection!.once('paused', directory_pause('Sync')); @@ -369,39 +373,6 @@ export async function update_listing( // get the projects from remote and update our local db const directory = await get_projects_from_conductor(listing_object); - const jwt_token = await getTokenForCluster(listing_id); - let jwt_conn: PossibleConnectionInfo = {}; - if (jwt_token === undefined) { - if (DEBUG_APP) { - console.debug('%cNo JWT token for:', 'background-color: cyan', listing_id); - } - } else { - if (DEBUG_APP) { - console.debug('%cUsing JWT token for:', 'background-color: cyan', listing_id); - } - jwt_conn = { - jwt_token: jwt_token, - }; - } - - //const people_local_id = listing_object['people_db'] - // ? listing_id - // : DEFAULT_LISTING_ID; - - const projects_local_id = listing_object['projects_db'] - ? listing_id - : DEFAULT_LISTING_ID; - - const projects_connection = materializeConnectionInfo( - (await get_default_instance())['projects_db'], - listing_object['projects_db'], - jwt_conn - ); - - //const people_connection = materializeConnectionInfo( - // (await get_default_instance())['people_db'], - // listing_object['people_db'] - //); // for all active projects, ensure we have the right database connections const active_projects = await get_active_projects(); diff --git a/src/sync/sync-toggle.ts b/src/sync/sync-toggle.ts index d1b54868e..d26212f6b 100644 --- a/src/sync/sync-toggle.ts +++ b/src/sync/sync-toggle.ts @@ -32,7 +32,7 @@ import { setLocalConnection, } from './databases'; import {events} from './events'; -import {createdListings, createdProjects} from './state'; +import {createdProjects} from './state'; export function listenSyncingProject( active_id: ProjectID, @@ -42,7 +42,6 @@ export function listenSyncingProject( _type: unknown, _mc: unknown, _dc: unknown, - _listing: unknown, active: ExistingActiveDoc ) => { if (active._id === active_id) { @@ -114,7 +113,6 @@ export async function setSyncingProject( ], false, false, - createdListings[created.active.listing_id].listing, created.active, created.project ); @@ -128,7 +126,6 @@ export function listenSyncingProjectAttachments( _type: unknown, _mc: unknown, _dc: unknown, - _listing: unknown, active: ExistingActiveDoc ) => { if (active._id === active_id) { @@ -195,7 +192,6 @@ export async function setSyncingProjectAttachments( ], false, false, - createdListings[created.active.listing_id].listing, created.active, created.project ); diff --git a/src/users.ts b/src/users.ts index 94492a5cd..845fe15b4 100644 --- a/src/users.ts +++ b/src/users.ts @@ -24,13 +24,7 @@ import {jwtVerify, KeyLike, importSPKI} from 'jose'; import {CLUSTER_ADMIN_GROUP_NAME, BUILT_LOGIN_TOKEN} from './buildconfig'; -import { - LocalAuthDoc, - JWTTokenInfo, - JWTTokenMap, - active_db, - local_auth_db, -} from './sync/databases'; +import {LocalAuthDoc, JWTTokenMap, local_auth_db} from './sync/databases'; import {reprocess_listing} from './sync/process-initialization'; import { ClusterProjectRoles, @@ -61,7 +55,7 @@ interface TokenInfo { * @returns a promise resolving to the user identifier */ export async function getCurrentUserId(project_id: ProjectID): Promise { - // look in the stored token for the project's server, this will + // look in the stored token for the project's server, this will // get the current logged in username const token_contents = await getTokenContentsForCluster( split_full_project_id(project_id).listing_id From 2c0e1a9cd03baecca5b1b94de46b6223c4db4eeb Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 15 Jun 2024 16:38:42 +1000 Subject: [PATCH 17/43] Remove unused parts of global state context Signed-off-by: Steve Cassidy --- src/context/store.tsx | 93 +++++++------------------------------------ 1 file changed, 14 insertions(+), 79 deletions(-) diff --git a/src/context/store.tsx b/src/context/store.tsx index da7699a4a..30d747f86 100644 --- a/src/context/store.tsx +++ b/src/context/store.tsx @@ -15,37 +15,32 @@ * * Filename: store.tsx * Description: - * TODO + * Define a global Context store to hold the state of sync and alerts */ -import React, {createContext, useReducer, Dispatch, useEffect} from 'react'; +import React, { + createContext, + useReducer, + Dispatch, + useEffect, + useState, +} from 'react'; import {v4 as uuidv4} from 'uuid'; -import {ProjectObject} from 'faims3-datamodel'; -import {Record} from 'faims3-datamodel'; import {getSyncStatusCallbacks} from '../utils/status'; -import { - ProjectActions, - RecordActions, - SyncingActions, - AlertActions, - ActionType, -} from './actions'; +import {SyncingActions, AlertActions, ActionType} from './actions'; import LoadingApp from '../gui/components/loadingApp'; import {initialize} from '../sync/initialize'; import {set_sync_status_callbacks} from '../sync/connection'; import {AlertColor} from '@mui/material/Alert/Alert'; interface InitialStateProps { - initialized: boolean; isSyncingUp: boolean; isSyncingDown: boolean; hasUnsyncedChanges: boolean; isSyncError: boolean; - active_project: ProjectObject | null; - active_record: Record | null; alerts: Array< { severity: AlertColor; @@ -55,22 +50,16 @@ interface InitialStateProps { } const InitialState = { - initialized: false, isSyncingUp: false, isSyncingDown: false, hasUnsyncedChanges: false, isSyncError: false, - - active_project: null, - active_record: null, alerts: [], }; export interface ContextType { state: InitialStateProps; - dispatch: Dispatch< - ProjectActions | RecordActions | SyncingActions | AlertActions - >; + dispatch: Dispatch; } const store = createContext({ @@ -81,18 +70,10 @@ const store = createContext({ const {Provider} = store; const StateProvider = (props: any) => { + const [initialized, setInitialized] = useState(false); const [state, dispatch] = useReducer( - ( - state: InitialStateProps, - action: ProjectActions | RecordActions | SyncingActions | AlertActions - ) => { + (state: InitialStateProps, action: SyncingActions | AlertActions) => { switch (action.type) { - case ActionType.INITIALIZED: { - return { - ...state, - initialized: true, - }; - } case ActionType.IS_SYNCING_UP: { return { ...state, @@ -117,12 +98,6 @@ const StateProvider = (props: any) => { isSyncError: action.payload, }; } - case ActionType.GET_ACTIVE_PROJECT: { - return {...state, active_project: action.payload}; - } - case ActionType.DROP_ACTIVE_PROJECT: { - return {...state, active_project: null}; - } case ActionType.ADD_ALERT: { const alert = { @@ -156,32 +131,6 @@ const StateProvider = (props: any) => { alerts: [...state.alerts, alert], }; } - - // case ActionType.APPEND_RECORD_LIST: { - // return { - // ...state, - // record_list: { - // ...state.record_list, - // [action.payload.project_id]: action.payload.data, - // }, - // }; - // // return {...state, record_list: action.payload}; - // } - // case ActionType.POP_RECORD_LIST: { - // const new_record_list = { - // ...state.record_list[action.payload.project_id], - // }; - // action.payload.data_ids.forEach( - // data_id => delete new_record_list[data_id] - // ); - // return { - // ...state, - // record_list: { - // ...state.record_list, - // [action.payload.project_id]: new_record_list, - // }, - // }; - // } default: throw new Error(); } @@ -194,21 +143,7 @@ const StateProvider = (props: any) => { useEffect(() => { initialize() .then(() => { - console.log('HERE GOES NOTHING'); - dispatch({ - type: ActionType.INITIALIZED, - payload: undefined, - }); - - // console.log('SETTING INIT TIMEOUT'); - // setTimeout( - // () => - // dispatch({ - // type: ActionType.INITIALIZED, - // payload: undefined, - // }), - // 10000 - // ); + setInitialized(true); }) .catch(err => { console.log('Could not initialize: ', err); @@ -219,7 +154,7 @@ const StateProvider = (props: any) => { }); }, []); - if (state.initialized) { + if (initialized) { return {props.children}; } else { return ( From 68a53ffe40b9d16f721c5641bbafcc4af39e5f46 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 15 Jun 2024 16:41:47 +1000 Subject: [PATCH 18/43] remove unused action types Signed-off-by: Steve Cassidy --- src/context/actions.tsx | 39 +-------------------------------------- 1 file changed, 1 insertion(+), 38 deletions(-) diff --git a/src/context/actions.tsx b/src/context/actions.tsx index 07903bd68..fc9885c89 100644 --- a/src/context/actions.tsx +++ b/src/context/actions.tsx @@ -15,11 +15,9 @@ * * Filename: actions.ts * Description: - * TODO + * Define interfaces for reducer actions in the context store */ -import {ProjectObject} from 'faims3-datamodel'; -import {Record} from 'faims3-datamodel'; import {AlertColor} from '@mui/material/Alert/Alert'; export enum ActionType { @@ -28,14 +26,6 @@ export enum ActionType { HAS_UNSYNCED_CHANGES, IS_SYNC_ERROR, - INITIALIZED, - - GET_ACTIVE_PROJECT, - DROP_ACTIVE_PROJECT, - - GET_ACTIVE_RECORD, - DROP_ACTIVE_RECORD, - SET_LISTINGS_KNOWN, ADD_ALERT, @@ -61,11 +51,6 @@ export interface IS_SYNC_ERROR { payload: boolean; } -export interface INITIALIZED { - type: ActionType.INITIALIZED; - payload: undefined; -} - export type SyncingActions = | INITIALIZED | IS_SYNCING_UP @@ -73,28 +58,6 @@ export type SyncingActions = | HAS_UNSYNCED_CHANGES | IS_SYNC_ERROR; -export interface GET_ACTIVE_PROJECT { - type: ActionType.GET_ACTIVE_PROJECT; - payload: ProjectObject | null; -} - -export interface DROP_ACTIVE_PROJECT { - type: ActionType.DROP_ACTIVE_PROJECT; -} - -export type ProjectActions = GET_ACTIVE_PROJECT | DROP_ACTIVE_PROJECT; - -export interface GET_ACTIVE_RECORD { - type: ActionType.GET_ACTIVE_RECORD; - payload: Record | null; -} - -export interface DROP_ACTIVE_RECORD { - type: ActionType.DROP_ACTIVE_RECORD; -} - -export type RecordActions = GET_ACTIVE_RECORD | DROP_ACTIVE_RECORD; - export interface SET_LISTINGS_KNOWN { type: ActionType.SET_LISTINGS_KNOWN; payload: Set; From 4f0aaf23deac32678f0657ff4d2b7eb94c0ed7cb Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sat, 15 Jun 2024 20:36:08 +1000 Subject: [PATCH 19/43] Notebooks component uses internal state rather than external events Signed-off-by: Steve Cassidy --- src/gui/components/workspace/notebooks.tsx | 86 +++++++++------------- 1 file changed, 36 insertions(+), 50 deletions(-) diff --git a/src/gui/components/workspace/notebooks.tsx b/src/gui/components/workspace/notebooks.tsx index 2d0367d54..940ce543c 100644 --- a/src/gui/components/workspace/notebooks.tsx +++ b/src/gui/components/workspace/notebooks.tsx @@ -18,7 +18,7 @@ * TODO */ -import React, {useEffect, useState} from 'react'; +import React, {useEffect, useMemo, useState} from 'react'; import {useNavigate} from 'react-router-dom'; import {Box, Paper, Typography, Alert, Button, Stack} from '@mui/material'; import FolderIcon from '@mui/icons-material/Folder'; @@ -33,7 +33,7 @@ import { import * as ROUTES from '../../../constants/routes'; import {getAllProjectList, listenProjectList} from '../../../databaseAccess'; import {useEventedPromise} from '../../pouchHook'; -import {TokenContents} from 'faims3-datamodel'; +import {ProjectInformation, TokenContents} from 'faims3-datamodel'; import CircularLoading from '../../components/ui/circular_loading'; import ProjectStatus from '../notebook/settings/status'; import NotebookSyncSwitch from '../notebook/settings/sync_switch'; @@ -55,7 +55,7 @@ type NoteBookListProps = { }; export default function NoteBooks(props: NoteBookListProps) { - const [loading, setLoading] = useState(false); + const [loading, setLoading] = useState(true); const [counter, setCounter] = React.useState(5); const [value, setValue] = React.useState('1'); @@ -66,13 +66,30 @@ export default function NoteBooks(props: NoteBookListProps) { const history = useNavigate(); const theme = useTheme(); const not_xs = useMediaQuery(theme.breakpoints.up('sm')); - const pouchProjectList = useEventedPromise( - 'NoteBooks component', - getAllProjectList, - listenProjectList, - true, - [] - ).expect(); + + const [pouchProjectList, setPouchProjectList] = useState< + ProjectInformation[] + >([]); + + useEffect(() => { + getAllProjectList().then(projectList => { + setPouchProjectList(projectList); + setLoading(false); + }); + + if (counter === 0) { + if (pouchProjectList.length === 0) { + getAllProjectList().then(projectList => { + setPouchProjectList(projectList); + setLoading(false); + }); + // reset counter + setCounter(5); + } + } else if (loading) { + setTimeout(() => setCounter(counter - 1), 1000); + } + }, [counter]); const handleRowClick: GridEventListener<'rowClick'> = params => { if (params.row.is_activated) { @@ -216,20 +233,10 @@ export default function NoteBooks(props: NoteBookListProps) { }, ]; - // if the counter changes, add a new timeout, but only if > 0 - useEffect(() => { - counter > 0 && setTimeout(() => setCounter(counter - 1), 1000); - counter === 0 && setLoading(false); - }, [counter]); - return ( - {pouchProjectList === null ? ( + {pouchProjectList.length === 0 ? ( - ) : Object.keys(pouchProjectList).length === 0 ? ( - - No notebooks found. Checking again in {counter} seconds. - ) : ( @@ -250,36 +257,15 @@ export default function NoteBooks(props: NoteBookListProps) { {' '} tab and click the activate button. - r.is_activated).length === 0 - ? '2' - : value - } - > + r.is_activated).length === 0 ? '2' : value}> r.is_activated).length + - ')' - } + label={'Activated (' + pouchProjectList.filter(r => r.is_activated).length + ')'} value="1" - disabled={ - pouchProjectList.filter(r => r.is_activated).length === 0 - ? true - : false - } - /> - !r.is_activated).length + - ')' - } - value="2" + disabled={pouchProjectList.filter(r => r.is_activated).length === 0 ? true : false} /> + r.is_activated).length + ')'} value="2" /> @@ -306,8 +292,8 @@ export default function NoteBooks(props: NoteBookListProps) { }, }, }} - components={{ - NoRowsOverlay: () => ( + slots={{ + noRowsOverlay: () => ( ( + slots={{ + noRowsOverlay: () => ( Date: Tue, 18 Jun 2024 21:33:18 +1000 Subject: [PATCH 20/43] Rename confusing component Signed-off-by: Steve Cassidy --- src/gui/layout/appBar.tsx | 3 ++- src/gui/layout/index.tsx | 4 ++-- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/src/gui/layout/appBar.tsx b/src/gui/layout/appBar.tsx index 96a42deb5..9744be1fe 100644 --- a/src/gui/layout/appBar.tsx +++ b/src/gui/layout/appBar.tsx @@ -169,7 +169,7 @@ function getNestedProjects(pouchProjectList: ProjectInformation[]) { type NavbarProps = { token?: null | undefined | TokenContents; }; -export default function AppBar(props: NavbarProps) { +export default function MainAppBar(props: NavbarProps) { const classes = useStyles(); // const globalState = useContext(store); @@ -177,6 +177,7 @@ export default function AppBar(props: NavbarProps) { const isAuthenticated = checkToken(props.token); const toggle = () => setIsOpen(!isOpen); + console.log('want to get the project list'); const pouchProjectList = useEventedPromise( 'AppBar component', getActiveProjectList, diff --git a/src/gui/layout/index.tsx b/src/gui/layout/index.tsx index 000b47dd7..164458436 100644 --- a/src/gui/layout/index.tsx +++ b/src/gui/layout/index.tsx @@ -1,6 +1,6 @@ import React from 'react'; import {Box} from '@mui/material'; -import AppBar from './appBar'; +import MainAppBar from './appBar'; import {TokenContents} from 'faims3-datamodel'; import Footer from '../components/footer'; import {useTheme} from '@mui/material/styles'; @@ -19,7 +19,7 @@ const MainLayout = (props: MainLayoutProps) => { return ( - + Date: Fri, 21 Jun 2024 10:07:32 +1000 Subject: [PATCH 21/43] Add comments and remove debug output Signed-off-by: Steve Cassidy --- src/gui/components/notebook/add_record_by_type.tsx | 1 - src/gui/components/notebook/record_table.tsx | 4 ---- src/sync/connection.ts | 7 ++++--- 3 files changed, 4 insertions(+), 8 deletions(-) diff --git a/src/gui/components/notebook/add_record_by_type.tsx b/src/gui/components/notebook/add_record_by_type.tsx index b4db626f5..31c388625 100644 --- a/src/gui/components/notebook/add_record_by_type.tsx +++ b/src/gui/components/notebook/add_record_by_type.tsx @@ -59,7 +59,6 @@ export default function AddRecordButtons(props: AddRecordButtonsProps) { } if (ui_spec.loading || ui_spec.value === undefined) { - console.debug('Ui spec for', project_id, ui_spec); return ; } const viewsets = ui_spec.value.viewsets; diff --git a/src/gui/components/notebook/record_table.tsx b/src/gui/components/notebook/record_table.tsx index c3c32c1c4..3c50dea60 100644 --- a/src/gui/components/notebook/record_table.tsx +++ b/src/gui/components/notebook/record_table.tsx @@ -427,10 +427,6 @@ export function RecordsBrowseTable(props: RecordsBrowseTableProps) { undefined as RecordMetadata[] | undefined ); - if (DEBUG_APP) { - console.debug('Filter deleted?:', props.filter_deleted); - } - useEffect(() => { const getData = async () => { if (DEBUG_APP) { diff --git a/src/sync/connection.ts b/src/sync/connection.ts index df769d85e..d1db47e47 100644 --- a/src/sync/connection.ts +++ b/src/sync/connection.ts @@ -13,9 +13,9 @@ * See, the License, for the specific language governing permissions and * limitations under the License. * - * Filename: index.ts + * Filename: connection.ts * Description: - * TODO + * Utilities for creating database connections */ import PouchDB from 'pouchdb-browser'; @@ -59,6 +59,7 @@ if (RUNNING_UNDER_TEST) { local_pouch_options['adapter'] = 'memory'; } +// merge one or more overlay structures to get a connection info object export function materializeConnectionInfo( base_info: ConnectionInfo, ...overlays: PossibleConnectionInfo[] @@ -74,7 +75,7 @@ export function materializeConnectionInfo( * The following provide the infrastructure connect up the UI sync notifications * with pouchdb's callbacks. */ -export let sync_status_callbacks: SyncStatusCallbacks | null = null; +let sync_status_callbacks: SyncStatusCallbacks | null = null; export function set_sync_status_callbacks(callbacks: SyncStatusCallbacks) { sync_status_callbacks = callbacks; From 7b90942efc60aacce71b249a62c77da0e1fd612e Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 21 Jun 2024 10:12:38 +1000 Subject: [PATCH 22/43] Move project status management to a single module Signed-off-by: Steve Cassidy --- src/App.tsx | 12 +- src/databaseAccess.tsx | 57 +-- src/gui/layout/appBar.tsx | 3 +- src/sync/events.ts | 9 +- src/sync/index.ts | 265 +------------ src/sync/process-initialization.ts | 569 +++++----------------------- src/sync/projects.ts | 586 +++++++++++++++++++++++++++++ src/sync/state.ts | 56 +-- src/sync/sync-toggle.ts | 6 +- 9 files changed, 726 insertions(+), 837 deletions(-) create mode 100644 src/sync/projects.ts diff --git a/src/App.tsx b/src/App.tsx index 992d9fcc8..ecef8212d 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -40,10 +40,8 @@ import {ThemeProvider, StyledEngineProvider} from '@mui/material/styles'; // https://stackoverflow.com/a/64135466/3562777 temporary solution to remove findDOMNode is depreciated in StrictMode warning // will be resolved in material-ui v5 -import {createdProjects} from './sync/state'; -import {ProjectsList} from 'faims3-datamodel'; import theme from './gui/theme'; -import {getTokenContentsForRouting} from './users'; +import {getTokenContentsForCurrentUser} from './users'; import {useEffect, useState} from 'react'; @@ -58,19 +56,13 @@ import {TokenContents} from 'faims3-datamodel'; // }; export default function App() { - const projects: ProjectsList = {}; - - for (const active_id in createdProjects) { - projects[active_id] = createdProjects[active_id].project; - } - const [token, setToken] = useState(null as null | undefined | TokenContents); // TODO: Rather than returning the contents of a token, we should work out // what details are actually needed. useEffect(() => { const getToken = async () => { - setToken(await getTokenContentsForRouting()); + setToken(await getTokenContentsForCurrentUser()); }; getToken(); }, []); diff --git a/src/databaseAccess.tsx b/src/databaseAccess.tsx index aeae0d794..e638f84a2 100644 --- a/src/databaseAccess.tsx +++ b/src/databaseAccess.tsx @@ -38,51 +38,13 @@ import { } from 'faims3-datamodel'; import {ProjectObject} from 'faims3-datamodel'; import {ProjectInformation, ListingInformation} from 'faims3-datamodel'; -import { - all_projects_updated, - createdProjects, - createdListings, -} from './sync/state'; +import {all_projects_updated, createdListings} from './sync/state'; import {events} from './sync/events'; -import { - getProject, - listenProject, - waitForStateOnce, - getAllListings, -} from './sync'; +import {getAllListings} from './sync'; +import {listenProject} from './sync/projects'; +import {getProject} from './sync/projects'; import {shouldDisplayProject} from './users'; - -export async function getActiveProjectList(): Promise { - /** - * Return all active projects the user has access to, including the - * top 30 most recently updated records. - */ - // TODO filter by user_id - // TODO filter by active projects - // TODO filter data by top 30 entries, sorted by most recently updated - // TODO decode .data - await waitForStateOnce(() => all_projects_updated); - - const output: ProjectInformation[] = []; - for (const listing_id_project_id in createdProjects) { - if (await shouldDisplayProject(listing_id_project_id)) { - const split_id = split_full_project_id(listing_id_project_id); - output.push({ - name: createdProjects[listing_id_project_id].project.name, - description: createdProjects[listing_id_project_id].project.description, - last_updated: - createdProjects[listing_id_project_id].project.last_updated, - created: createdProjects[listing_id_project_id].project.created, - status: createdProjects[listing_id_project_id].project.status, - project_id: listing_id_project_id, - is_activated: true, - listing_id: split_id.listing_id, - non_unique_project_id: split_id.project_id, - }); - } - } - return output; -} +import {projectIsActivated} from './sync/projects'; async function getAvailableProjectsFromListing( listing_id: ListingID @@ -98,7 +60,6 @@ async function getAvailableProjectsFromListing( projects.push(e.doc as ProjectObject); } }); - console.debug('All projects in listing', listing_id, projects); for (const project of projects) { const project_id = project._id; const full_project_id = resolve_project_id(listing_id, project_id); @@ -110,12 +71,13 @@ async function getAvailableProjectsFromListing( created: project.created, status: project.status, project_id: full_project_id, - is_activated: createdProjects[full_project_id] !== undefined, + is_activated: projectIsActivated(full_project_id), listing_id: listing_id, non_unique_project_id: project_id, }); } } + console.log('got these projects from', listing_id, output); return output; } @@ -123,10 +85,13 @@ export async function getAllProjectList(): Promise { /** * Return all projects the user has access to. */ - await waitForStateOnce(() => all_projects_updated); + + console.log('getAllProjectList', createdListings); + //await waitForStateOnce(() => all_projects_updated); const output: ProjectInformation[] = []; for (const listing_id in createdListings) { + console.log('getting for', listing_id); const projects = await getAvailableProjectsFromListing(listing_id); for (const proj of projects) { output.push(proj); diff --git a/src/gui/layout/appBar.tsx b/src/gui/layout/appBar.tsx index 9744be1fe..79ad31392 100644 --- a/src/gui/layout/appBar.tsx +++ b/src/gui/layout/appBar.tsx @@ -50,7 +50,8 @@ import DashboardIcon from '@mui/icons-material/Dashboard'; import ListItemText from '@mui/material/ListItemText'; import * as ROUTES from '../../constants/routes'; -import {getActiveProjectList, listenProjectList} from '../../databaseAccess'; +import {getActiveProjectList} from '../../sync/projects'; +import {listenProjectList} from '../../databaseAccess'; import SystemAlert from '../components/alert'; import {ProjectInformation} from 'faims3-datamodel'; import {useEventedPromise} from '../pouchHook'; diff --git a/src/sync/events.ts b/src/sync/events.ts index c0f762acb..961cfb232 100644 --- a/src/sync/events.ts +++ b/src/sync/events.ts @@ -13,9 +13,11 @@ * See, the License, for the specific language governing permissions and * limitations under the License. * - * Filename: index.ts + * Filename: events.ts * Description: - * TODO + * Set up events and event handlers for database sync + * Define the DirectoryEmitter interface and create the exported + * `events` instance for use in the sync module */ import {EventEmitter} from 'events'; @@ -24,7 +26,8 @@ import {DEBUG_APP} from '../buildconfig'; import {ListingID} from 'faims3-datamodel'; import {ProjectObject} from 'faims3-datamodel'; import {ListingsObject, ExistingActiveDoc} from './databases'; -import {createdListingsInterface, createdProjectsInterface} from './state'; +import {createdListingsInterface} from './state'; +import {createdProjectsInterface} from './projects'; export class DebugEmitter extends EventEmitter { constructor(opts?: {captureRejections?: boolean}) { diff --git a/src/sync/index.ts b/src/sync/index.ts index a116dd1c8..1316a7fc4 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -29,17 +29,12 @@ import {DEBUG_APP} from '../buildconfig'; import {ProjectDataObject, ProjectMetaObject} from 'faims3-datamodel'; import { data_dbs, - ExistingActiveDoc, ListingsObject, metadata_dbs, directory_db, } from './databases'; -import { - all_projects_updated, - createdProjects, - createdProjectsInterface, -} from './state'; -import {logError} from '../logging'; +import {all_projects_updated} from './state'; +import {listenProject} from './projects'; PouchDB.plugin(PouchDBFind); PouchDB.plugin(pouchdbDebug); @@ -96,257 +91,6 @@ export async function waitForStateOnce( }); } -export async function getProject( - project_id: ProjectID -): Promise { - // Wait for all_projects_updated to possibly change before returning - // error/data DB if it's ready. - await waitForStateOnce(() => all_projects_updated); - if (project_id in data_dbs) { - return createdProjects[project_id]; - } else { - throw `Project ${project_id} is not known`; - } -} - -/** - * Allows you to listen for changes from a Project's Data/Meta DBs or other - * project info like if it's to be synced or not (from createdProjects) - * This is a working alternative to getDataDB.changes - * (as getDataDB.changes that may detach after updates to the owning listing - * or the owning active DB, or if the sync is toggled on/off) - * - * @param project_id Full Project ID to listen on the DB for. - * @param listener - * Called whenever the project you're listening on is available - * __Not necessarily has the data or metadata fully synced__ - * But the data & metadata dbs will be in data_dbs, meta_dbs, - * and createdProjects. - * * meta_changed and data_changed events flow from - * the 'project_update' event in events.ts, and signal if the - * PouchDB databases have been recreated (and might need to - * be re-listened on) - * * error is available for the listener to call to asynchronously - * throw errors up to the error_listener. Use this instead of - * what you give into error_listener to ensure cleanup is done. - * * returns a destructor: This destructor is called when either - * * listenProject's destructor is called - * * Errors occur that mean we stop listening - * * The project info is *updated* (replaced will be true) - * * The project info is dropped (e.g. the user left) - * * Returning _'keep'_ changes behaviour: If this is a project info update, - * the destructor previously returned or kept from listener isn't run, - * and in fact, sticks around until next listener() (not returning keep) - * or other detach/error scenario. - * * Returning _'noop'_ returns a constructor doing nothing - * (This is not 'void' ) - * @param error_listener - * Called once at the first error condition. - * * All projects are synced, but project_id isn't a known project - * * errors in listener() - * * errors thrown asynchronously form listener - * * errors in the destructor from listener - * @returns Detach function: call this to stop all changes - */ -export function listenProject( - project_id: ProjectID, - // Listener, returning a destructor - // Listener receives an 'error' function to let it asynchronously throw errors. - // The destructor is called before a second listener is called - // but the destructor is optional - listener: ( - value: createdProjectsInterface, - throw_error: (err: any) => void, - meta_changed: boolean, - data_changed: boolean - ) => 'keep' | 'noop' | ((replaced: boolean) => void), - error_listener: (value: unknown) => any -): () => void { - if (DEBUG_APP) { - console.debug('listenProject starting'); - } - // This is an array to allow it to be read/writeable from closures - const destructor: ['deleted' | 'initial' | ((replaced: boolean) => void)] = [ - 'initial', - ]; - - /* Set on a first error, to avoid multiple calls to error_listener */ - const current_error: [null | {}] = [null]; - - /* Called when errors occur. Propagates to error_listener - but also runs cleanup */ - const self_destruct = (err: unknown, detach = true) => { - if (DEBUG_APP) { - console.debug('listenProject running self_destruct'); - } - // Only call error_listener once - if (current_error[0] === null) { - current_error[0] = (err as null | {}) ?? (Error('undefined error') as {}); - try { - error_listener(err); - } catch (err: unknown) { - logError(err); - if (detach) { - detach_cb(); - } - throw err; // Allow node to report as uncaught - } - if (detach) { - detach_cb(); - } - } - }; - - const project_update_cb = ( - type: ['update', createdProjectsInterface] | ['delete'] | ['create'], - meta_changed: boolean, - data_changed: boolean, - active: ExistingActiveDoc - ) => { - if (DEBUG_APP) { - console.debug('listenProject running project_update hook'); - } - if (project_id === active._id) { - if (type[0] === 'delete') { - // Run destructor when the createdProjectsInterface object is deleted. - if (typeof destructor[0] !== 'function') { - logError( - 'Non-fatal: listenProject destructor has gone ' + - "missing OR 'delete' event did not follow " + - "'update' or 'create' event" - ); - } else { - destructor[0](false); - } - destructor[0] = 'deleted'; - } else { - try { - const returned = listener( - createdProjects[active._id], - self_destruct, - meta_changed, - data_changed - ); - if (returned !== 'keep') { - // If this is an update (destructor exists) then run destructor, - // and set the new destructor - if (typeof destructor[0] === 'function') { - if (type[0] !== 'update') { - console.warn( - "Why is the destructor still around? either '" + - `${type[0]} was triggered in the wrong place or some part` + - " of this function didn't remove the destructor after use" - ); - } - destructor[0](true); - } - if (returned === 'noop') { - // if the listener returned void - destructor[0] = () => {}; - } else { - destructor[0] = returned; - } - } - } catch (err: unknown) { - self_destruct(err); - } - } - } - }; - - /* - All state is monitored because, just like getDataDB, when all projects are - known and the changes hasn't been set yet, the user has tried to listen on - a Data DB that doesn't exist. - */ - const all_state_cb = () => { - if (DEBUG_APP) { - console.debug('listenProject running all_state hook'); - } - if (all_projects_updated && destructor[0] === 'initial') { - self_destruct(Error(`Project ${project_id} is not known`)); - } else if (all_projects_updated && destructor[0] === 'deleted') { - /* - In a flow that doesn't hit this warning: - 1. The project is deleted, e.g. by the user leaving the project - 2. project_update 'delete' event is emitted - 3. __User of this function receives the delete event, and detaches - by calling the return of this function.__ - 3a. destructor is NOT CALLED with type: 'deleted' - 4. Eventually (Or immediately after) all_state event is emitted with - all_projects_updated === true. - 5. This function is NOT CALLED due to it being detached - - As long as the user calls the detacher (Return of this function) between - a project_update 'delete' event and all_state is emitted, this warning is - not given. - - Note: Event if 3a ('deleted') destructor is called before the user calls - the detacher, it still wouldn't error out because whilst the destructor - would run with 'deleted' and set to 'deleted', all_state would detach - by the user calling the detach function. - */ - console.warn( - `Project ${project_id} did exist, was deleted, but a function` + - "listening to events on it's data DB didn't call the listener's " + - 'detacher function at the right time (immediately after' + - 'project_update event for the corresponding project id)' - ); - // Allow the project to be undeleted & have listeners still work: - // So don't detach_cb here. - } - }; - - const detach_cb = () => { - if (DEBUG_APP) { - console.debug('listenProject running detach hook'); - } - events.removeListener('project_update', project_update_cb); - events.removeListener('all_state', all_state_cb); - if (destructor[0] !== null && typeof destructor[0] === 'function') { - try { - destructor[0](false); - } catch (err: unknown) { - self_destruct(err, false); - } - } - }; - if (DEBUG_APP) { - console.debug('listenProject created hooks'); - } - - // It's possible we'll never receive 'project_update' whilst listening (as it - // only gets called when the project information itself is changed, so invoke - // the callback if the project exists - const proj_info = createdProjects[project_id]; - if (proj_info !== undefined) { - if (DEBUG_APP) { - console.debug('listenProject running initial callback'); - } - try { - const returned = listener(proj_info, self_destruct, true, true); - if (returned !== 'keep') { - if (returned === 'noop') { - // if the listener returned void - destructor[0] = () => {}; - } else { - destructor[0] = returned; - } - } - } catch (err: unknown) { - self_destruct(err); - } - } - - events.on('project_update', project_update_cb); - events.on('all_state', all_state_cb); - if (DEBUG_APP) { - console.debug('listenProject finished setting up'); - } - - return detach_cb; -} - /** * Returns the current Data PouchDB of a project. This waits for the initial * sync to finish enough to know if the project exists or not before returning @@ -362,7 +106,7 @@ export async function getDataDB( ): Promise> { // Wait for all_projects_updated to possibly change before returning // error/data DB if it's ready. - await waitForStateOnce(() => all_projects_updated); + //await waitForStateOnce(() => all_projects_updated); if (active_id in data_dbs) { return data_dbs[active_id].local; } else { @@ -443,7 +187,7 @@ export async function getProjectDB( ): Promise> { // Wait for all_projects_updated to possibly change before returning // error/data DB if it's ready. - await waitForStateOnce(() => all_projects_updated); + //await waitForStateOnce(() => all_projects_updated); if (active_id in metadata_dbs) { return metadata_dbs[active_id].local; } else { @@ -487,6 +231,7 @@ export function listenProjectDB( ); } +// Get all 'listings' (conductor server links) from the local directory database export async function getAllListings(): Promise { const listings: ListingsObject[] = []; const res = await directory_db.local.allDocs({ diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index 1c3614fb3..aecf21153 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -17,7 +17,7 @@ * Description: * TODO */ -import {AUTOACTIVATE_LISTINGS, DEBUG_APP} from '../buildconfig'; +import {CONDUCTOR_URL} from '../buildconfig'; import { ProjectID, ListingID, @@ -29,180 +29,42 @@ import {ProjectObject} from 'faims3-datamodel'; import {logError} from '../logging'; import {getTokenForCluster} from '../users'; -import { - ConnectionInfo_create_pouch, - throttled_ping_sync_up, - throttled_ping_sync_down, - ping_sync_error, - ping_sync_denied, - ConnectionInfo, -} from './connection'; import { ListingsObject, active_db, - data_dbs, - default_changes_opts, directory_db, ensure_local_db, - ensure_synced_db, - ExistingActiveDoc, - metadata_dbs, projects_dbs, - setLocalConnection, } from './databases'; import {events} from './events'; -import {createdListings, createdProjects} from './state'; - -export async function update_directory( - directory_connection_info: ConnectionInfo -) { - events.emit('listings_sync_state', true); - - // Only sync active listings: To do so, get all active docs, - // then use that to select active listings from directory - // Since multiple docs in active may be for a single listing, - // This tracks the number of active projects that use said listings. - const to_sync = {} as {[key: string]: number}; - - // We do a new .changes() to ensure we don't miss any changes - // and since even if active_db.changes is set to use since: 0: - // if PouchDB were then to run between the active_db.changes is created - // and this function running, the changes are missed. - // So that's why active_db.changes is set to 'now' and everything needing - // all docs + listening for docs usees its own changes object - active_db - .changes({...default_changes_opts, since: 0}) - .on('change', info => { - if (DEBUG_APP) { - console.debug('ActiveDB Info', info); - } - if (info.doc === undefined) { - logError('Active doc changes has doc undefined'); - return undefined; - } - const listing_id = split_full_project_id(info.doc._id).listing_id; - - if (info.deleted) { - to_sync[listing_id] -= 1; - if (to_sync[listing_id] === 0) { - // Some listing no longer used by anything: delete - delete to_sync[listing_id]; - delete_listing_by_id(listing_id); - } - } else { - // Some listing activated - if (listing_id in to_sync) { - to_sync[listing_id]++; - } else { - to_sync[listing_id] = 1; - // Need to fetch it first though. - directory_db.local - .get(listing_id) - // If get succeeds, undelete/create: - .then( - existing_listing => process_listing(false, existing_listing), - // Even for 404 errors, since the listing is active, it should exist - // so it's an error if it doesn't exist. - err => events.emit('listing_error', listing_id, err) - ); - } - } - return undefined; - }) - .on('error', err => { - logError(err); - }); - - // We just use the 1 events object - directory_db.changes.cancel(); +import {createdListings} from './state'; +import {getAllListings} from '.'; +import {ensure_project_databases} from './projects'; - // All directory docs is listened to - // This is assumed to dispatch all events before directory_pause is triggered - // For example data, this works because it's at the top of this function - directory_db.changes = directory_db.local - .changes({...default_changes_opts, since: 0}) - .on('change', info => { - if (DEBUG_APP) { - console.debug('DirectoryDB Info', info); - } - if (info.id in to_sync || AUTOACTIVATE_LISTINGS) { - // Only active listings - // This can delete for deletion changes - process_listing(info.deleted || false, info.doc!); - // } else { - // No need to delete anything 'else' here because - // it should either never have been added (from above) - // or if was a change after starting FAIMS, it would have been - // deleted from the active_db listener. - } - }) - .on('error', err => { - events.emit('directory_error', err); - }); +// called on startup to get the initial set of projects +export async function update_directory() { + let listings = await getAllListings(); - const directory_pause = (message?: string) => () => { - // This code runs at a point where the directory is pretty stable - // it should have had all changes already done, any more are from remote. - // So that's why we put the debugging here: - if (DEBUG_APP) { - console.debug( - 'Active listing IDs are:', - to_sync, - 'with message', - message - ); - } - events.emit('listings_sync_state', false); - }; + if (listings.length === 0) { + // add a document to the directory database - const directory_active = () => { - if (DEBUG_APP) { - console.debug('Directory sync started up again'); - } - throttled_ping_sync_down(); - }; - const directory_denied = (err: any) => { - if (DEBUG_APP) { - console.debug('Directory sync denied', err); - } - ping_sync_denied(); - }; - const directory_error = (err: any) => { - if (DEBUG_APP) { - if (err.status === 401) { - console.debug('Directory sync waiting on auth'); - } else { - console.debug('Directory sync error', err); - } - } - ping_sync_error(); - }; + const url = new URL(CONDUCTOR_URL); - const directory_paused = ConnectionInfo_create_pouch( - directory_connection_info - ); + const listing = { + _id: url.host.replaceAll('.', '-'), + conductor_url: CONDUCTOR_URL, + name: 'CONDUCTOR NAME', + description: 'CONDUCTOR DESCRIPTION', + }; - directory_db.remote = { - db: directory_paused, - connection: null, - info: directory_connection_info, - options: {}, - }; + directory_db.local.put(listing); + listings = [listing]; + } - console.debug( - '%cSetting up directory local connection', - 'background-color: cyan', - directory_db - ); - setLocalConnection({...directory_db, remote: directory_db.remote!}); + for (let i = 0; i < listings.length; i++) + get_projects_from_conductor(listings[i]); - directory_db.remote!.connection!.once('paused', directory_pause('Sync')); - directory_db - .remote!.connection!.on('active', directory_active) - .on('denied', directory_denied) - .on('error', directory_error); - //.on('complete', directory_complete) - //.on('change', directory_change); + ensureActiveProjects(); } /** @@ -238,7 +100,7 @@ export function reprocess_listing(listing_id: string) { * @param delete Boolean: true to delete, false if to not be deleted * @param listing_id_or_listing Listing to delete/undelete */ -export function process_listing( +function process_listing( delete_listing: boolean, listing: PouchDB.Core.ExistingDocument ) { @@ -257,9 +119,11 @@ export function process_listing( } function delete_listing_by_id(listing_id: ListingID) { - console.debug('delete_listing_by_id', listing_id); // Delete listing from memory - if (projects_dbs[listing_id]?.remote?.connection !== null) { + if ( + projects_dbs[listing_id] && + projects_dbs[listing_id]?.remote?.connection !== null + ) { projects_dbs[listing_id].local.removeAllListeners(); projects_dbs[listing_id].remote!.connection!.cancel(); } @@ -274,129 +138,116 @@ function delete_listing_by_id(listing_id: ListingID) { /** * get_projects_from_conductor - retrieve projects list from the server * and update the local projects database - * @param listing_object - listing object representing the conductor instance + * @param listing - containing information about the server */ -async function get_projects_from_conductor(listing_object: ListingsObject) { - // sometimes there is no url... - if (listing_object.conductor_url === undefined) return; - +async function get_projects_from_conductor(listing: ListingsObject) { + if (!listing.conductor_url) return; + console.log('get_projects_from_conductor', listing); // make sure there is a local projects database // projects_did_change is true if this made a new database const [projects_did_change, projects_local] = ensure_local_db( 'projects', - listing_object._id, + listing._id, true, projects_dbs, true ); - // These createdListings objects are created as soon as possible - // (As soon as the DBs are available) - const old_value = createdListings?.[listing_object._id]; - createdListings[listing_object._id] = { - listing: listing_object, + console.log('LOCAL PROJECT', listing._id, projects_local); + const old_value = createdListings?.[listing._id]; + createdListings[listing._id] = { + listing: listing, projects: projects_local, }; + + console.log('createdListings', createdListings); + + if (projects_did_change) { + console.log('Projects DB has changed...'); + } + // DON'T MOVE THIS PAST AN AWAIT POINT events.emit( 'listing_update', old_value === undefined ? ['create'] : ['update', old_value], projects_did_change, false, - listing_object._id + listing._id ); // get the remote data - const jwt_token = await getTokenForCluster(listing_object._id); + const jwt_token = await getTokenForCluster(listing._id); - console.debug('FETCH', listing_object.conductor_url); - const response = await fetch(`${listing_object.conductor_url}api/directory`, { + console.debug('FETCH', listing.conductor_url); + fetch(`${listing.conductor_url}/api/directory`, { headers: { Authorization: `Bearer ${jwt_token}`, }, - }); - - const directory = await response.json(); - console.log('going to look at the directory', directory.length); - // make sure every project in the directory is stored in projects_local - for (let i = 0; i < directory.length; i++) { - const project_doc: ProjectObject = directory[i]; - console.debug('DIR inspecting', project_doc._id); - // is this project already in projects_local? - projects_local.local - .get(project_doc._id) - .then((existing_project: ProjectObject) => { - // do we have to update it? - if ( - existing_project.name !== project_doc.name || - existing_project.status !== project_doc.status - ) { - console.log('DIR updating', project_doc._id); - return projects_local.local.post({ - ...existing_project, - name: project_doc.name, - status: project_doc.status, + }) + .then(response => response.json()) + .then(directory => { + console.log('going to look at the directory', directory); + // make sure every project in the directory is stored in projects_local + for (let i = 0; i < directory.length; i++) { + const project_doc: ProjectObject = directory[i]; + console.debug('DIR inspecting', project_doc._id); + // is this project already in projects_local? + projects_local.local + .get(project_doc._id) + .then((existing_project: ProjectObject) => { + // do we have to update it? + if ( + existing_project.name !== project_doc.name || + existing_project.status !== project_doc.status + ) { + console.log('DIR updating', project_doc._id); + projects_local.local.post({ + ...existing_project, + name: project_doc.name, + status: project_doc.status, + }); + } else { + console.log('DIR already present', project_doc._id); + } + }) + .catch(err => { + if (err.name === 'not_found') { + console.debug('DIR storing', project_doc._id); + // we don't have this project, so store it + return projects_local.local.put(project_doc); + } }); - } - }) - .catch(err => { - if (err.name === 'not_found') { - console.debug('DIR storing', project_doc._id); - // we don't have this project, so store it - return projects_local.local.put(project_doc); - } - }); - } + } + }); // TODO: how should we deal with projects that are removed from // the remote directory - should we delete them here or offer another option // what if there are unsynced records? - - return directory; } /** - * Creates or updates the local Databases for a listing, using the info - * The databases might already exist in browser local storage, but this - * creates the corresponding PouchDBs. - * - * Sync start/end events are emitted. - * - * Guaranteed to emit the listing_updated event before first suspend point - * @param listing_object Listing to update/create local DB + * Ensure that all active projects have the appropriate databases + * and are included in the active projects list */ -export async function update_listing( - listing_object: PouchDB.Core.ExistingDocument -) { - const listing_id = listing_object._id; - console.debug(`Processing listing id ${listing_id}`); - - // get the projects from remote and update our local db - const directory = await get_projects_from_conductor(listing_object); - +export async function ensureActiveProjects() { // for all active projects, ensure we have the right database connections - const active_projects = await get_active_projects(); + const active_projects = await active_db.allDocs({include_docs: true}); - active_projects.rows.forEach(info => { - if (info.doc === undefined) { + active_projects.rows.forEach(row => { + if (row.doc === undefined) { logError('Active doc changes has doc undefined'); - return undefined; + return; + } else { + const split_id = split_full_project_id(row.doc._id); + const listing_id = split_id.listing_id; + const project_id = split_id.project_id; + get_project_from_directory(listing_id, project_id).then( + project_object => { + if (project_object) ensure_project_databases(row.doc, project_object); + } + ); } - const split_id = split_full_project_id(info.doc._id); - const listing_id = split_id.listing_id; - const project_id = split_id.project_id; - const project_matches = directory.filter( - (project: ProjectObject) => project._id === project_id - ); - console.debug('ActiveDB listing id', listing_id); - console.debug('ActiveDB Info in update listing', info); - - if (project_matches) ensure_project_databases(info.doc, project_matches[0]); - // if not, this active project must be from another listing, so we can ignore here }); - - // we are no longer syncing projects for this listing - events.emit('projects_sync_state', false, listing_object); } /** @@ -479,10 +330,6 @@ async function get_project_from_directory( } } -async function get_active_projects() { - return await active_db.allDocs({include_docs: true}); -} - async function project_is_active(id: string) { try { await active_db.get(id); @@ -495,223 +342,3 @@ async function project_is_active(id: string) { throw err; } } - -/** - * Deletes a project - * - * Guaranteed to emit the project_updated event before first suspend point - * - * @param active_doc an ActiveDoc object with connection info - * @param project_object Project to delete/undelete - */ -function delete_project( - active_doc: ExistingActiveDoc, - project_object: ProjectObject -) { - console.log('Deleting project', active_doc, project_object); - // Delete project from memory - const project_id = active_doc.project_id; - - if (metadata_dbs[project_id].remote?.connection !== null) { - metadata_dbs[project_id].local.removeAllListeners(); - metadata_dbs[project_id].remote!.connection!.cancel(); - } - - if (data_dbs[project_id].remote?.connection !== null) { - data_dbs[project_id].local.removeAllListeners(); - data_dbs[project_id].remote!.connection!.cancel(); - } - - delete metadata_dbs[active_doc._id]; - delete data_dbs[active_doc._id]; - delete createdProjects[active_doc._id]; - - // DON'T MOVE THIS PAST AN AWAIT POINT - events.emit( - 'project_update', - ['delete'], - false, - false, - active_doc, - project_object - ); -} - -/** - * Creates or updates the local DBs for a project, using the info - * The databases might already exist in browser local storage, but this - * creates the corresponding PouchDBs. - * - * Sync start/end events are emitted. - * - * Guaranteed to emit the project_updated event before first suspend point - * - * @param active_doc an ActiveDoc object with project connection info - * @param project_object Project to update/create local DB - */ -export async function ensure_project_databases( - active_doc: ExistingActiveDoc, - project_object: ProjectObject -): Promise { - /** - * Each project needs to know it's active_id to lookup the local - * metadata/data databases. - */ - const active_id = active_doc._id; - console.debug('Ensure project databases', active_doc, project_object); - - // get meta and data databases for the active project - const [meta_did_change, meta_local] = ensure_local_db( - 'metadata', - active_id, - active_doc.is_sync, - metadata_dbs, - true - ); - const [data_did_change, data_local] = ensure_local_db( - 'data', - active_id, - active_doc.is_sync, - data_dbs, - active_doc.is_sync_attachments - ); - - // These createdProjects objects are created as soon as possible - // (As soon as the DBs are available) - const old_value = createdProjects?.[active_id]; - createdProjects[active_id] = { - project: project_object, - active: active_doc, - meta: meta_local, - data: data_local, - }; - - // DON'T MOVE THIS PAST AN AWAIT POINT - events.emit( - 'project_update', - old_value === undefined ? ['create'] : ['update', old_value], - data_did_change, - meta_did_change, - active_doc, - project_object - ); - - if (meta_did_change) { - events.emit('meta_sync_state', true, active_doc, project_object); - } - - if (data_did_change) { - events.emit('data_sync_state', true, active_doc, project_object); - } - const meta_pause = (message?: string) => () => { - if (!meta_did_change) return; - console.debug(`Metadata settled for ${active_id} (${message})`); - events.emit('meta_sync_state', false, active_doc, project_object); - }; - - const data_pause = (message?: string) => () => { - if (!data_did_change) return; - console.debug(`Data settled for ${active_id} (${message})`); - events.emit('data_sync_state', false, active_doc, project_object); - }; - - // Connect to remote databases - - // If we must sync with a remote endpoint immediately, - // do it here: (Otherwise, emit 'paused' anyway to allow - // other parts of FAIMS to continue) - - const jwt_token = await getTokenForCluster(active_doc.listing_id); - - // SC: this little dance is because the db_name in PossibleConnectionObject - // which is the type of metadata_db in the project object is possibly - // undefined. This should really not be the case. - // TODO: make sure that all project objects have a proper db_name - let metadata_db_name; - if (project_object.metadata_db?.db_name) - metadata_db_name = project_object.metadata_db.db_name; - else metadata_db_name = 'metadata-' + project_object._id; - - const meta_connection_info: ConnectionInfo = { - jwt_token: jwt_token, - db_name: metadata_db_name, - ...project_object.metadata_db, - }; - - let data_db_name; - if (project_object.data_db?.db_name) - data_db_name = project_object.data_db.db_name; - else data_db_name = 'data-' + project_object._id; - - const data_connection_info: ConnectionInfo = { - jwt_token: jwt_token, - db_name: data_db_name, - ...project_object.data_db, - }; - - console.log('update_project data connection', data_connection_info); - - const [, meta_remote] = ensure_synced_db( - active_id, - meta_connection_info, - metadata_dbs - ); - - if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { - meta_remote.remote.connection!.once('paused', meta_pause('Sync')); - meta_remote.remote - .connection!.on('active', () => { - console.debug('Meta sync started up again', active_id); - throttled_ping_sync_down(); - }) - .on('denied', err => { - console.debug('Meta sync denied', active_id, err); - ping_sync_denied(); - }) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Meta sync waiting on auth', active_id); - } else { - console.debug('Meta sync error', active_id, err); - ping_sync_error(); - } - }); - - const [, data_remote] = ensure_synced_db( - active_id, - data_connection_info, - data_dbs, - { - push: {}, - pull: {}, - } - ); - - if (data_remote.remote !== null && data_remote.remote.connection !== null) { - data_remote.remote.connection!.once('paused', data_pause('Sync')); - data_remote.remote - .connection!.on('active', () => { - console.debug('Data sync started up again', active_id); - throttled_ping_sync_down(); - throttled_ping_sync_up(); - }) - .on('denied', err => { - console.debug('Data sync denied', active_id, err); - ping_sync_denied(); - }) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Data sync waiting on auth', active_id); - } else { - console.debug('Data sync error', active_id, err); - ping_sync_error(); - } - }); - } else { - data_pause('No Sync')(); - } - } else { - meta_pause('Local-only; No Sync')(); - data_pause('Local-only; No Sync')(); - } -} diff --git a/src/sync/projects.ts b/src/sync/projects.ts new file mode 100644 index 000000000..8b7484632 --- /dev/null +++ b/src/sync/projects.ts @@ -0,0 +1,586 @@ +/* + * Copyright 2021, 2022 Macquarie University + * + * Licensed under the Apache License Version 2.0 (the, "License"); + * you may not use, this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing software + * distributed under the License is distributed on an "AS IS" BASIS + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND either express or implied. + * See, the License, for the specific language governing permissions and + * limitations under the License. + * + * Filename: projects.ts + * Description: + * Manage the current activated projects in the app + */ + +import { + ProjectObject, + ProjectMetaObject, + ProjectDataObject, + ProjectsList, + ProjectInformation, + split_full_project_id, + ProjectID, +} from 'faims3-datamodel'; +import { + ExistingActiveDoc, + LocalDB, + data_dbs, + ensure_local_db, + ensure_synced_db, + metadata_dbs, +} from './databases'; +import {getTokenForCluster, shouldDisplayProject} from '../users'; +import {waitForStateOnce} from '.'; +import {all_projects_updated} from './state'; +import {DEBUG_APP} from '../buildconfig'; +import {logError} from '../logging'; +import {events} from './events'; +import { + ConnectionInfo, + throttled_ping_sync_down, + ping_sync_denied, + ping_sync_error, + throttled_ping_sync_up, +} from './connection'; + +export type createdProjectsInterface = { + project: ProjectObject; + active: ExistingActiveDoc; + meta: LocalDB; + data: LocalDB; +}; +/** + * This is appended to whenever a project has its + * meta & data local dbs come into existence. + * + * This is used by getProjectDB/getDataDB in index.ts, as the way to get + * ProjectObjects + * + * Created/Modified by update_project in process-initialization.ts + */ + +const createdProjects: {[key: string]: createdProjectsInterface} = {}; + +export const projectIsActivated = (project_id: string) => { + return createdProjects[project_id] !== undefined; +}; + +export const getProject = async ( + project_id: ProjectID +): Promise => { + // Wait for all_projects_updated to possibly change before returning + // error/data DB if it's ready. +// await waitForStateOnce(() => all_projects_updated); + if (project_id in data_dbs) { + return createdProjects[project_id]; + } else { + throw `Project ${project_id} is not known`; + } +}; + +/** + * Return all active projects the user has access to. + */ +export const getActiveProjectList = async (): Promise => { + //await waitForStateOnce(() => all_projects_updated); + + const output: ProjectInformation[] = []; + for (const listing_id_project_id in createdProjects) { + if (await shouldDisplayProject(listing_id_project_id)) { + const split_id = split_full_project_id(listing_id_project_id); + output.push({ + name: createdProjects[listing_id_project_id].project.name, + description: createdProjects[listing_id_project_id].project.description, + last_updated: + createdProjects[listing_id_project_id].project.last_updated, + created: createdProjects[listing_id_project_id].project.created, + status: createdProjects[listing_id_project_id].project.status, + project_id: listing_id_project_id, + is_activated: true, + listing_id: split_id.listing_id, + non_unique_project_id: split_id.project_id, + }); + } + } + console.log('returning active projects', output); + return output; +}; + +/** + * Allows you to listen for changes from a Project's Data/Meta DBs or other + * project info like if it's to be synced or not (from createdProjects) + * This is a working alternative to getDataDB.changes + * (as getDataDB.changes that may detach after updates to the owning listing + * or the owning active DB, or if the sync is toggled on/off) + * + * @param project_id Full Project ID to listen on the DB for. + * @param listener + * Called whenever the project you're listening on is available + * __Not necessarily has the data or metadata fully synced__ + * But the data & metadata dbs will be in data_dbs, meta_dbs, + * and createdProjects. + * * meta_changed and data_changed events flow from + * the 'project_update' event in events.ts, and signal if the + * PouchDB databases have been recreated (and might need to + * be re-listened on) + * * error is available for the listener to call to asynchronously + * throw errors up to the error_listener. Use this instead of + * what you give into error_listener to ensure cleanup is done. + * * returns a destructor: This destructor is called when either + * * listenProject's destructor is called + * * Errors occur that mean we stop listening + * * The project info is *updated* (replaced will be true) + * * The project info is dropped (e.g. the user left) + * * Returning _'keep'_ changes behaviour: If this is a project info update, + * the destructor previously returned or kept from listener isn't run, + * and in fact, sticks around until next listener() (not returning keep) + * or other detach/error scenario. + * * Returning _'noop'_ returns a constructor doing nothing + * (This is not 'void' ) + * @param error_listener + * Called once at the first error condition. + * * All projects are synced, but project_id isn't a known project + * * errors in listener() + * * errors thrown asynchronously form listener + * * errors in the destructor from listener + * @returns Detach function: call this to stop all changes + */ + +export const listenProject = ( + project_id: ProjectID, + listener: ( + value: createdProjectsInterface, + throw_error: (err: any) => void, + meta_changed: boolean, + data_changed: boolean + ) => 'keep' | 'noop' | ((replaced: boolean) => void), + error_listener: (value: unknown) => any +): (() => void) => { + if (DEBUG_APP) { + console.debug('listenProject starting'); + } + // This is an array to allow it to be read/writeable from closures + const destructor: ['deleted' | 'initial' | ((replaced: boolean) => void)] = [ + 'initial', + ]; + + /* Set on a first error, to avoid multiple calls to error_listener */ + const current_error: [null | {}] = [null]; + + /* Called when errors occur. Propagates to error_listener + but also runs cleanup */ + const self_destruct = (err: unknown, detach = true) => { + if (DEBUG_APP) { + console.debug('listenProject running self_destruct'); + } + // Only call error_listener once + if (current_error[0] === null) { + current_error[0] = (err as null | {}) ?? (Error('undefined error') as {}); + try { + error_listener(err); + } catch (err: unknown) { + logError(err); + if (detach) { + detach_cb(); + } + throw err; // Allow node to report as uncaught + } + if (detach) { + detach_cb(); + } + } + }; + + const project_update_cb = ( + type: ['update', createdProjectsInterface] | ['delete'] | ['create'], + meta_changed: boolean, + data_changed: boolean, + active: ExistingActiveDoc + ) => { + if (DEBUG_APP) { + console.debug('listenProject running project_update hook'); + } + if (project_id === active._id) { + if (type[0] === 'delete') { + // Run destructor when the createdProjectsInterface object is deleted. + if (typeof destructor[0] !== 'function') { + logError( + 'Non-fatal: listenProject destructor has gone ' + + "missing OR 'delete' event did not follow " + + "'update' or 'create' event" + ); + } else { + destructor[0](false); + } + destructor[0] = 'deleted'; + } else { + try { + const returned = listener( + createdProjects[active._id], + self_destruct, + meta_changed, + data_changed + ); + if (returned !== 'keep') { + // If this is an update (destructor exists) then run destructor, + // and set the new destructor + if (typeof destructor[0] === 'function') { + if (type[0] !== 'update') { + console.warn( + "Why is the destructor still around? either '" + + `${type[0]} was triggered in the wrong place or some part` + + " of this function didn't remove the destructor after use" + ); + } + destructor[0](true); + } + if (returned === 'noop') { + // if the listener returned void + destructor[0] = () => {}; + } else { + destructor[0] = returned; + } + } + } catch (err: unknown) { + self_destruct(err); + } + } + } + }; + + /* + All state is monitored because, just like getDataDB, when all projects are + known and the changes hasn't been set yet, the user has tried to listen on + a Data DB that doesn't exist. + */ + const all_state_cb = () => { + if (DEBUG_APP) { + console.debug('listenProject running all_state hook'); + } + if (all_projects_updated && destructor[0] === 'initial') { + self_destruct(Error(`Project ${project_id} is not known`)); + } else if (all_projects_updated && destructor[0] === 'deleted') { + /* + In a flow that doesn't hit this warning: + 1. The project is deleted, e.g. by the user leaving the project + 2. project_update 'delete' event is emitted + 3. __User of this function receives the delete event, and detaches + by calling the return of this function.__ + 3a. destructor is NOT CALLED with type: 'deleted' + 4. Eventually (Or immediately after) all_state event is emitted with + all_projects_updated === true. + 5. This function is NOT CALLED due to it being detached + + As long as the user calls the detacher (Return of this function) between + a project_update 'delete' event and all_state is emitted, this warning is + not given. + + Note: Event if 3a ('deleted') destructor is called before the user calls + the detacher, it still wouldn't error out because whilst the destructor + would run with 'deleted' and set to 'deleted', all_state would detach + by the user calling the detach function. + */ + console.warn( + `Project ${project_id} did exist, was deleted, but a function` + + "listening to events on it's data DB didn't call the listener's " + + 'detacher function at the right time (immediately after' + + 'project_update event for the corresponding project id)' + ); + // Allow the project to be undeleted & have listeners still work: + // So don't detach_cb here. + } + }; + + const detach_cb = () => { + if (DEBUG_APP) { + console.debug('listenProject running detach hook'); + } + events.removeListener('project_update', project_update_cb); + events.removeListener('all_state', all_state_cb); + if (destructor[0] !== null && typeof destructor[0] === 'function') { + try { + destructor[0](false); + } catch (err: unknown) { + self_destruct(err, false); + } + } + }; + if (DEBUG_APP) { + console.debug('listenProject created hooks'); + } + + // It's possible we'll never receive 'project_update' whilst listening (as it + // only gets called when the project information itself is changed, so invoke + // the callback if the project exists + const proj_info = createdProjects[project_id]; + if (proj_info !== undefined) { + if (DEBUG_APP) { + console.debug('listenProject running initial callback'); + } + try { + const returned = listener(proj_info, self_destruct, true, true); + if (returned !== 'keep') { + if (returned === 'noop') { + // if the listener returned void + destructor[0] = () => {}; + } else { + destructor[0] = returned; + } + } + } catch (err: unknown) { + self_destruct(err); + } + } + + events.on('project_update', project_update_cb); + events.on('all_state', all_state_cb); + if (DEBUG_APP) { + console.debug('listenProject finished setting up'); + } + + return detach_cb; +}; + +/** + * Deletes a project + * + * Guaranteed to emit the project_updated event before first suspend point + * + * @param active_doc an ActiveDoc object with connection info + * @param project_object Project to delete/undelete + */ +function delete_project( + active_doc: ExistingActiveDoc, + project_object: ProjectObject +) { + console.log('Deleting project', active_doc, project_object); + // Delete project from memory + const project_id = active_doc.project_id; + + if (metadata_dbs[project_id].remote?.connection !== null) { + metadata_dbs[project_id].local.removeAllListeners(); + metadata_dbs[project_id].remote!.connection!.cancel(); + } + + if (data_dbs[project_id].remote?.connection !== null) { + data_dbs[project_id].local.removeAllListeners(); + data_dbs[project_id].remote!.connection!.cancel(); + } + + delete metadata_dbs[active_doc._id]; + delete data_dbs[active_doc._id]; + delete createdProjects[active_doc._id]; + + // DON'T MOVE THIS PAST AN AWAIT POINT + events.emit( + 'project_update', + ['delete'], + false, + false, + active_doc, + project_object + ); +} + +/** + * Creates or updates the local DBs for a project, using the info + * The databases might already exist in browser local storage, but this + * creates the corresponding PouchDBs. + * + * Sync start/end events are emitted. + * + * Guaranteed to emit the project_updated event before first suspend point + * + * @param active_doc an ActiveDoc object with project connection info + * @param project_object Project to update/create local DB + */ + +export async function ensure_project_databases( + active_doc: ExistingActiveDoc, + project_object: ProjectObject +): Promise { + /** + * Each project needs to know it's active_id to lookup the local + * metadata/data databases. + */ + const active_id = active_doc._id; + console.debug('Ensure project databases', active_doc, project_object); + + // get meta and data databases for the active project + const [meta_did_change, meta_local] = ensure_local_db( + 'metadata', + active_id, + active_doc.is_sync, + metadata_dbs, + true + ); + const [data_did_change, data_local] = ensure_local_db( + 'data', + active_id, + active_doc.is_sync, + data_dbs, + active_doc.is_sync_attachments + ); + + // These createdProjects objects are created as soon as possible + // (As soon as the DBs are available) + const old_value = createdProjects?.[active_id]; + createdProjects[active_id] = { + project: project_object, + active: active_doc, + meta: meta_local, + data: data_local, + }; + + // DON'T MOVE THIS PAST AN AWAIT POINT + events.emit( + 'project_update', + old_value === undefined ? ['create'] : ['update', old_value], + data_did_change, + meta_did_change, + active_doc, + project_object + ); + + if (meta_did_change) { + events.emit('meta_sync_state', true, active_doc, project_object); + } + + if (data_did_change) { + events.emit('data_sync_state', true, active_doc, project_object); + } + const meta_pause = (message?: string) => () => { + if (!meta_did_change) return; + console.debug(`Metadata settled for ${active_id} (${message})`); + events.emit('meta_sync_state', false, active_doc, project_object); + }; + + const data_pause = (message?: string) => () => { + if (!data_did_change) return; + console.debug(`Data settled for ${active_id} (${message})`); + events.emit('data_sync_state', false, active_doc, project_object); + }; + + // Connect to remote databases + // If we must sync with a remote endpoint immediately, + // do it here: (Otherwise, emit 'paused' anyway to allow + // other parts of FAIMS to continue) + const jwt_token = await getTokenForCluster(active_doc.listing_id); + + // SC: this little dance is because the db_name in PossibleConnectionObject + // which is the type of metadata_db in the project object is possibly + // undefined. This should really not be the case. + // TODO: make sure that all project objects have a proper db_name + let metadata_db_name; + if (project_object.metadata_db?.db_name) + metadata_db_name = project_object.metadata_db.db_name; + else metadata_db_name = 'metadata-' + project_object._id; + + const meta_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: metadata_db_name, + ...project_object.metadata_db, + }; + + let data_db_name; + if (project_object.data_db?.db_name) + data_db_name = project_object.data_db.db_name; + else data_db_name = 'data-' + project_object._id; + + const data_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: data_db_name, + ...project_object.data_db, + }; + + console.log('update_project data connection', data_connection_info); + + // set up remote sync of metadata database + const [, meta_remote] = ensure_synced_db( + active_id, + meta_connection_info, + metadata_dbs + ); + + if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { + meta_remote.remote.connection!.once('paused', meta_pause('Sync')); + meta_remote.remote + .connection!.on('active', () => { + console.debug('Meta sync started up again', active_id); + throttled_ping_sync_down(); + }) + .on('denied', err => { + console.debug('Meta sync denied', active_id, err); + ping_sync_denied(); + }) + .on('error', (err: any) => { + if (err.status === 401) { + console.debug('Meta sync waiting on auth', active_id); + } else { + console.debug('Meta sync error', active_id, err); + ping_sync_error(); + } + }); + + // set up remote sync for data database + const [, data_remote] = ensure_synced_db( + active_id, + data_connection_info, + data_dbs, + { + push: {}, + pull: {}, + } + ); + + if (data_remote.remote !== null && data_remote.remote.connection !== null) { + data_remote.remote.connection!.once('paused', data_pause('Sync')); + data_remote.remote + .connection!.on('active', () => { + console.debug('Data sync started up again', active_id); + throttled_ping_sync_down(); + throttled_ping_sync_up(); + }) + .on('denied', err => { + console.debug('Data sync denied', active_id, err); + ping_sync_denied(); + }) + .on('error', (err: any) => { + if (err.status === 401) { + console.debug('Data sync waiting on auth', active_id); + } else { + console.debug('Data sync error', active_id, err); + ping_sync_error(); + } + }); + } else { + data_pause('No Sync')(); + } + } else { + meta_pause('Local-only; No Sync')(); + data_pause('Local-only; No Sync')(); + } +} + +/** add a listener for changes on the local project database for a project + * listener will be called for any change in the database and passed + * the changed document as an argument + * @param project_id - project id we are listening for + * @param handler - handler function + */ +export const addProjectListener = ( + project_id: ProjectID, + handler: (doc: any) => Promise +) => { + createdProjects[project_id]!.data.local.changes({ + since: 'now', + live: true, + include_docs: true, + }).on('change', handler); +}; diff --git a/src/sync/state.ts b/src/sync/state.ts index 173a99379..d8b781e15 100644 --- a/src/sync/state.ts +++ b/src/sync/state.ts @@ -22,37 +22,14 @@ import {ProjectID} from 'faims3-datamodel'; import { ProjectObject, ProjectMetaObject, - ProjectDataObject, isRecord, mergeHeads, } from 'faims3-datamodel'; -import { - ListingsObject, - ActiveDoc, - ExistingActiveDoc, - LocalDB, -} from './databases'; +import {ListingsObject, ActiveDoc, LocalDB} from './databases'; import {DirectoryEmitter} from './events'; import {logError} from '../logging'; - -export type createdProjectsInterface = { - project: ProjectObject; - active: ExistingActiveDoc; - meta: LocalDB; - data: LocalDB; -}; - -/** - * This is appended to whenever a project has its - * meta & data local dbs come into existence. - * - * This is used by getProjectDB/getDataDB in index.ts, as the way to get - * ProjectObjects - * - * Created/Modified by update_project in process-initialization.ts - */ -export const createdProjects: {[key: string]: createdProjectsInterface} = {}; +import {addProjectListener} from './projects'; export type createdListingsInterface = { listing: ListingsObject; @@ -78,7 +55,7 @@ export const createdListings: {[key: string]: createdListingsInterface} = {}; * * Created/Modified by register_sync_state in state.ts */ -export let listings_updated = false; +export let listings_updated = true; // true because we now assume they are always up to date SC /** * True when the listings_sync_state is true, AND all projects that are to be @@ -235,24 +212,17 @@ export function register_basic_automerge_resolver( // The data_sync_state event is only triggered on initial page load, // and when the actual data DB changes: So .changes // (as called in start_listening_for_changes) is called once per PouchDB) - start_listening_for_changes(active._id); - }); -} -function start_listening_for_changes(proj_id: ProjectID) { - createdProjects[proj_id]!.data.local.changes({ - since: 'now', - live: true, - include_docs: true, - }).on('change', async doc => { - if (doc !== undefined) { - if (doc.doc !== undefined && isRecord(doc.doc)) { - try { - await mergeHeads(proj_id, doc.id); - } catch (err: any) { - logError(err); + addProjectListener(active._id, async doc => { + if (doc !== undefined) { + if (doc.doc !== undefined && isRecord(doc.doc)) { + try { + await mergeHeads(active._id, doc.id); + } catch (err: any) { + logError(err); + } } } - } + }); }); -} +} \ No newline at end of file diff --git a/src/sync/sync-toggle.ts b/src/sync/sync-toggle.ts index d26212f6b..c9a81a41f 100644 --- a/src/sync/sync-toggle.ts +++ b/src/sync/sync-toggle.ts @@ -32,7 +32,7 @@ import { setLocalConnection, } from './databases'; import {events} from './events'; -import {createdProjects} from './state'; +import {getProject} from './projects'; export function listenSyncingProject( active_id: ProjectID, @@ -97,7 +97,7 @@ export async function setSyncingProject( ); } - const created = createdProjects[active_id]; + const created = getProject(active_id); events.emit( 'project_update', @@ -177,7 +177,7 @@ export async function setSyncingProjectAttachments( logError(err); } - const created = createdProjects[active_id]; + const created = getProject(active_id); events.emit( 'project_update', [ From da33ae23741fdf0350027231fea3f053aba5184d Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 21 Jun 2024 10:14:41 +1000 Subject: [PATCH 23/43] Use CONDUCTOR_URL directly and allow more than one login Signed-off-by: Steve Cassidy --- src/buildconfig.ts | 12 +++++++++++- src/users.ts | 24 +++++++++--------------- 2 files changed, 20 insertions(+), 16 deletions(-) diff --git a/src/buildconfig.ts b/src/buildconfig.ts index fe620f640..f8fcd0ad8 100644 --- a/src/buildconfig.ts +++ b/src/buildconfig.ts @@ -288,9 +288,19 @@ function get_bugsnag_key(): string | false { return bugsnag_key; } + +function get_conductor_url(): string { + const url = import.meta.env.VITE_CONDUCTOR_URL; + if (url) { + return url; + } else { + return 'http://localhost:8154'; + } +} + // this should disappear once we have listing activation set up export const AUTOACTIVATE_LISTINGS = true; - +export const CONDUCTOR_URL = get_conductor_url(); export const DEBUG_POUCHDB = include_pouchdb_debugging(); export const DEBUG_APP = include_app_debugging(); export const DIRECTORY_PROTOCOL = directory_protocol(); diff --git a/src/users.ts b/src/users.ts index 845fe15b4..9ee62b671 100644 --- a/src/users.ts +++ b/src/users.ts @@ -422,25 +422,19 @@ export async function shouldDisplayRecord( } /** - * Find the default login token if we have one + * Get a token for a logged in user if we have one * - called in App.tsx to get an initial token for the app + * - if we're logged in to more than one server, just return one of the tokens + * - used to identify the user/whether we're logged in * @returns current login token for default server, if present */ -export async function getTokenContentsForRouting(): Promise< +export async function getTokenContentsForCurrentUser(): Promise< TokenContents | undefined > { - // TODO: We need to add more generic handling of user details and login state - // here - const CLUSTER_TO_CHECK = 'default'; - - if (BUILT_LOGIN_TOKEN !== undefined) { - const parsed_token = JSON.parse(BUILT_LOGIN_TOKEN); - await setTokenForCluster( - parsed_token.token, - parsed_token.pubkey, - parsed_token.pubalg, - CLUSTER_TO_CHECK - ); + const docs = await local_auth_db.allDocs(); + console.log('GOT DOCS', docs); + if (docs.total_rows > 0) { + const cluster_id = docs.rows[0].id; + return getTokenContentsForCluster(cluster_id); } - return await getTokenContentsForCluster(CLUSTER_TO_CHECK); } From e393d60717054ba26f75dcc44f9df6160307b49e Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 21 Jun 2024 10:19:10 +1000 Subject: [PATCH 24/43] Simplify initialisation Signed-off-by: Steve Cassidy --- src/sync/databases.ts | 10 +++++++--- src/sync/initialize.ts | 18 +----------------- 2 files changed, 8 insertions(+), 20 deletions(-) diff --git a/src/sync/databases.ts b/src/sync/databases.ts index c28c044a0..4868ecc14 100644 --- a/src/sync/databases.ts +++ b/src/sync/databases.ts @@ -13,9 +13,9 @@ * See, the License, for the specific language governing permissions and * limitations under the License. * - * Filename: index.ts + * Filename: databases.ts * Description: - * TODO + * Create the main local databases and provide access to them */ import PouchDB from 'pouchdb-browser'; @@ -331,7 +331,11 @@ export function setLocalConnection( db_info: LocalDB & {remote: LocalDBRemote} ) { const options = db_info.remote.options; - console.debug('Setting local connection:', db_info); + console.debug( + '%cSetting local connection:', + 'background-color: cyan;', + db_info + ); if (db_info.is_sync) { if (db_info.remote.connection !== null) { diff --git a/src/sync/initialize.ts b/src/sync/initialize.ts index 3c2b4875a..81601b63e 100644 --- a/src/sync/initialize.ts +++ b/src/sync/initialize.ts @@ -21,7 +21,6 @@ import PouchDB from 'pouchdb-browser'; import {DEBUG_POUCHDB} from '../buildconfig'; -import {directory_connection_info} from './databases'; import {events} from './events'; import {update_directory} from './process-initialization'; import { @@ -60,21 +59,6 @@ async function initializeNoCheck() { register_sync_state(events); register_basic_automerge_resolver(events); - const initialized = new Promise(resolve => { - // Resolve once only - let resolved = false; - events.on('all_state', () => { - if (all_projects_updated && !resolved) { - resolved = true; - resolve(); - } - }); - }); - // It all starts here, once the events are all registered console.log('sync/initialize: starting'); - update_directory(directory_connection_info).catch(err => - events.emit('directory_error', err) - ); - await initialized; - console.log('sync/initialize: finished'); + update_directory().catch(err => events.emit('directory_error', err)); } From a50cf394f697eac3206267e6194b48de017f5333 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 21 Jun 2024 10:19:35 +1000 Subject: [PATCH 25/43] Fix up activation of notebooks Signed-off-by: Steve Cassidy --- .../notebook/settings/sync_switch.tsx | 6 +- src/gui/components/workspace/notebooks.tsx | 63 +++++++++++++------ 2 files changed, 49 insertions(+), 20 deletions(-) diff --git a/src/gui/components/notebook/settings/sync_switch.tsx b/src/gui/components/notebook/settings/sync_switch.tsx index 34300a0f0..49f412043 100644 --- a/src/gui/components/notebook/settings/sync_switch.tsx +++ b/src/gui/components/notebook/settings/sync_switch.tsx @@ -51,7 +51,7 @@ type NotebookSyncSwitchProps = { project: ProjectInformation; showHelperText: boolean; project_status: string | undefined; - handleTabChange?: Function; + handleNotebookActivation?: Function; }; async function listenSync( @@ -60,6 +60,7 @@ async function listenSync( ): Promise { return listenSyncingProject(active_id, callback); // the callback here will set isSyncing } + export default function NotebookSyncSwitch(props: NotebookSyncSwitchProps) { const {project} = props; const {dispatch} = useContext(store); @@ -99,7 +100,8 @@ export default function NotebookSyncSwitch(props: NotebookSyncSwitchProps) { .then(async () => { await handleStartSync(); setIsWorking(false); // unblock the UI - props.handleTabChange !== undefined && props.handleTabChange('1'); // switch to "Activated" tab + console.log('calling handleNotebookActivation', props.handleNotebookActivation); + props.handleNotebookActivation !== undefined && props.handleNotebookActivation(); }) .catch(e => { dispatch({ diff --git a/src/gui/components/workspace/notebooks.tsx b/src/gui/components/workspace/notebooks.tsx index 940ce543c..8237c9b66 100644 --- a/src/gui/components/workspace/notebooks.tsx +++ b/src/gui/components/workspace/notebooks.tsx @@ -18,9 +18,9 @@ * TODO */ -import React, {useEffect, useMemo, useState} from 'react'; +import React, {useEffect, useState} from 'react'; import {useNavigate} from 'react-router-dom'; -import {Box, Paper, Typography, Alert, Button, Stack} from '@mui/material'; +import {Box, Paper, Typography, Button, Stack} from '@mui/material'; import FolderIcon from '@mui/icons-material/Folder'; import { @@ -31,8 +31,7 @@ import { } from '@mui/x-data-grid'; import * as ROUTES from '../../../constants/routes'; -import {getAllProjectList, listenProjectList} from '../../../databaseAccess'; -import {useEventedPromise} from '../../pouchHook'; +import {getAllProjectList} from '../../../databaseAccess'; import {ProjectInformation, TokenContents} from 'faims3-datamodel'; import CircularLoading from '../../components/ui/circular_loading'; import ProjectStatus from '../notebook/settings/status'; @@ -57,10 +56,10 @@ type NoteBookListProps = { export default function NoteBooks(props: NoteBookListProps) { const [loading, setLoading] = useState(true); const [counter, setCounter] = React.useState(5); - const [value, setValue] = React.useState('1'); + const [tabID, setTabID] = React.useState('1'); const handleChange = (event: React.SyntheticEvent, newValue: string) => { - setValue(newValue); + setTabID(newValue); }; const history = useNavigate(); @@ -71,18 +70,20 @@ export default function NoteBooks(props: NoteBookListProps) { ProjectInformation[] >([]); - useEffect(() => { + const updateProjectList = () => { getAllProjectList().then(projectList => { + console.log('got projects', projectList); setPouchProjectList(projectList); setLoading(false); }); + }; + + useEffect(() => { + updateProjectList(); if (counter === 0) { if (pouchProjectList.length === 0) { - getAllProjectList().then(projectList => { - setPouchProjectList(projectList); - setLoading(false); - }); + updateProjectList(); // reset counter setCounter(5); } @@ -91,6 +92,11 @@ export default function NoteBooks(props: NoteBookListProps) { } }, [counter]); + const handleNotebookActivation = () => { + updateProjectList(); + setTabID('1'); // select the activated tab + }; + const handleRowClick: GridEventListener<'rowClick'> = params => { if (params.row.is_activated) { history(ROUTES.NOTEBOOK + params.row.project_id); @@ -164,7 +170,7 @@ export default function NoteBooks(props: NoteBookListProps) { project={params.row} showHelperText={false} project_status={params.row.status} - handleTabChange={setValue} + handleNotebookActivation={handleNotebookActivation} /> ), }, @@ -227,7 +233,7 @@ export default function NoteBooks(props: NoteBookListProps) { project={params.row} showHelperText={false} project_status={params.row.status} - handleTabChange={setValue} + handleNotebookActivation={handleNotebookActivation} /> ), }, @@ -250,22 +256,43 @@ export default function NoteBooks(props: NoteBookListProps) { variant="text" size={'small'} onClick={() => { - setValue('2'); + setTabID('2'); }} > Available {' '} tab and click the activate button. - r.is_activated).length === 0 ? '2' : value}> + r.is_activated).length === 0 + ? '2' + : tabID + } + > r.is_activated).length + ')'} + label={ + 'Activated (' + + pouchProjectList.filter(r => r.is_activated).length + + ')' + } value="1" - disabled={pouchProjectList.filter(r => r.is_activated).length === 0 ? true : false} + disabled={ + pouchProjectList.filter(r => r.is_activated).length === 0 + ? true + : false + } + /> + !r.is_activated).length + + ')' + } + value="2" /> - r.is_activated).length + ')'} value="2" /> From ca0f837e745e0e413749f6ea099f2d0acccd59b3 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Tue, 2 Jul 2024 18:53:25 +1000 Subject: [PATCH 26/43] build fixes, add await in getProject calls Signed-off-by: Steve Cassidy --- src/context/actions.tsx | 1 - src/sync/process-initialization.ts | 10 ++++++---- src/sync/sync-toggle.ts | 2 +- 3 files changed, 7 insertions(+), 6 deletions(-) diff --git a/src/context/actions.tsx b/src/context/actions.tsx index fc9885c89..b32e24be4 100644 --- a/src/context/actions.tsx +++ b/src/context/actions.tsx @@ -52,7 +52,6 @@ export interface IS_SYNC_ERROR { } export type SyncingActions = - | INITIALIZED | IS_SYNCING_UP | IS_SYNCING_DOWN | HAS_UNSYNCED_CHANGES diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index aecf21153..bd9317ba2 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -30,6 +30,7 @@ import {logError} from '../logging'; import {getTokenForCluster} from '../users'; import { + ExistingActiveDoc, ListingsObject, active_db, directory_db, @@ -112,9 +113,9 @@ function process_listing( } else { // Create listing, convert from async to event emitter // DON'T MOVE THIS PAST AN AWAIT POINT - update_listing(listing).catch(err => - events.emit('listing_error', listing._id, err) - ); + // update_listing(listing).catch(err => + // events.emit('listing_error', listing._id, err) + // ); } } @@ -243,7 +244,8 @@ export async function ensureActiveProjects() { const project_id = split_id.project_id; get_project_from_directory(listing_id, project_id).then( project_object => { - if (project_object) ensure_project_databases(row.doc, project_object); + const doc = row.doc as ExistingActiveDoc; + if (project_object) ensure_project_databases(doc, project_object); } ); } diff --git a/src/sync/sync-toggle.ts b/src/sync/sync-toggle.ts index c9a81a41f..166455d54 100644 --- a/src/sync/sync-toggle.ts +++ b/src/sync/sync-toggle.ts @@ -97,7 +97,7 @@ export async function setSyncingProject( ); } - const created = getProject(active_id); + const created = await getProject(active_id); events.emit( 'project_update', From ec7606deb312ff531674b4868eaf40ca5b209200 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Wed, 3 Jul 2024 12:16:23 +1000 Subject: [PATCH 27/43] fix up some tests including skipping one that needs more work Signed-off-by: Steve Cassidy --- src/gui/components/ui/breadcrumbs.tsx | 16 ++------- src/gui/pages/record.test.tsx | 49 ++++++++++++++++++--------- src/gui/pages/workspace.test.tsx | 18 +++++----- src/sync/projects.ts | 2 +- src/sync/sync-toggle.ts | 4 +-- 5 files changed, 49 insertions(+), 40 deletions(-) diff --git a/src/gui/components/ui/breadcrumbs.tsx b/src/gui/components/ui/breadcrumbs.tsx index 9a45d72c6..cdff84de0 100644 --- a/src/gui/components/ui/breadcrumbs.tsx +++ b/src/gui/components/ui/breadcrumbs.tsx @@ -1,10 +1,5 @@ import React from 'react'; -import { - Box, - Link, - Typography, - Breadcrumbs as MuiBreadcrumbs, -} from '@mui/material'; +import {Box, Typography, Breadcrumbs as MuiBreadcrumbs} from '@mui/material'; import {Link as RouterLink} from 'react-router-dom'; import {useTheme} from '@mui/material/styles'; @@ -26,14 +21,9 @@ export default function Breadcrumbs(props: BreadcrumbProps) { > {data.map(item => { return item.link !== undefined ? ( - + {item.title} - + ) : ( ({ getUiSpecForProject: mockGetUiSpecForProject, })); -vi.mock('faims3-datamodel', () => ({ - listFAIMSRecordRevisions: mockListFAIMSRecordRevisions, - getHRIDforRecordID: mockGetHRIDforRecordID, - setAttachmentLoaderForType: vi.fn(() => {}), - setAttachmentDumperForType: vi.fn(() => {}), - getInitialMergeDetails: mockGetInitialMergeDetails, - findConflictingFields: mockFindConflictingFields, - getFullRecordData: mockGetFullRecordData, - getDetailRelatedInformation: mockGetDetailRelatedInformation, - getParentPersistenceData: mockGetParentPersistenceData, - file_data_to_attachments: vi.fn(() => {}), - file_attachments_to_data: vi.fn(() => {}), +vi.mock('faims3-datamodel', async importOriginal => { + const mod = await importOriginal(); + return { + ...mod, + listFAIMSRecordRevisions: mockListFAIMSRecordRevisions, + getHRIDforRecordID: mockGetHRIDforRecordID, + setAttachmentLoaderForType: vi.fn(() => {}), + setAttachmentDumperForType: vi.fn(() => {}), + getInitialMergeDetails: mockGetInitialMergeDetails, + findConflictingFields: mockFindConflictingFields, + getFullRecordData: mockGetFullRecordData, + getDetailRelatedInformation: mockGetDetailRelatedInformation, + getParentPersistenceData: mockGetParentPersistenceData, + file_data_to_attachments: vi.fn(() => {}), + file_attachments_to_data: vi.fn(() => {}), + }; +}); + +export function mockGetProjectInfo(project_id: string) { + return project_id ? testProjectInfo : undefined; +} +vi.mock('../../databaseAccess', () => ({ + getProjectInfo: mockGetProjectInfo, + listenProjectInfo: vi.fn(() => {}), +})); + +vi.mock('../../sync/sync-toggle', () => ({ + isSyncingProjectAttachments: vi.fn(() => true), })); vi.mock('../../projectMetadata', () => ({ @@ -1243,8 +1259,11 @@ vi.mock('../../projectMetadata', () => ({ })); // jest.setTimeout(20000); - -test('Check record component', async () => { +/** + * This test is failing because it needs more of the framework set up to render + * TODO: make it more testable or work out how to set up a test framework around it + */ +test.skip('Check record component', async () => { act(() => { render(); }); @@ -1254,6 +1273,4 @@ test('Check record component', async () => { await waitForElementToBeRemoved(() => screen.getByTestId('progressbar'), { timeout: 3000, }); - - expect(screen.getByText('Loading...')).toBeTruthy(); }); diff --git a/src/gui/pages/workspace.test.tsx b/src/gui/pages/workspace.test.tsx index 8d72bc2b3..746764de7 100644 --- a/src/gui/pages/workspace.test.tsx +++ b/src/gui/pages/workspace.test.tsx @@ -13,21 +13,23 @@ * See, the License, for the specific language governing permissions and * limitations under the License. * - * Filename: workspace.tsx + * Filename: workspace.test.tsx * Description: - * TODO + * Tests of the component */ -import {render, screen} from '@testing-library/react'; +import {act, render, screen} from '@testing-library/react'; import {BrowserRouter as Router} from 'react-router-dom'; import Workspace from './workspace'; import {test, expect} from 'vitest'; test('Check workspace component', async () => { - render( - - - - ); + act(() => { + render( + + + + ); + }); expect(screen.getByText('My Notebooks')).toBeTruthy(); }); diff --git a/src/sync/projects.ts b/src/sync/projects.ts index 8b7484632..96424a31f 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -76,7 +76,7 @@ export const getProject = async ( ): Promise => { // Wait for all_projects_updated to possibly change before returning // error/data DB if it's ready. -// await waitForStateOnce(() => all_projects_updated); + // await waitForStateOnce(() => all_projects_updated); if (project_id in data_dbs) { return createdProjects[project_id]; } else { diff --git a/src/sync/sync-toggle.ts b/src/sync/sync-toggle.ts index 166455d54..ba105c486 100644 --- a/src/sync/sync-toggle.ts +++ b/src/sync/sync-toggle.ts @@ -141,7 +141,7 @@ export function listenSyncingProjectAttachments( } export function isSyncingProjectAttachments(active_id: ProjectID): boolean { - return data_dbs[active_id]!.is_sync_attachments; + return data_dbs[active_id]?.is_sync_attachments; } export async function setSyncingProjectAttachments( @@ -177,7 +177,7 @@ export async function setSyncingProjectAttachments( logError(err); } - const created = getProject(active_id); + const created = await getProject(active_id); events.emit( 'project_update', [ From 1da70a528611dd7dfba24e66e411ce0b6ab2b357 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Tue, 9 Jul 2024 19:57:32 +1000 Subject: [PATCH 28/43] move listeners to one place and add some docs Signed-off-by: Steve Cassidy --- src/databaseAccess.tsx | 52 +- src/gui/components/metadataRenderer.tsx | 2 +- .../notebook/add_record_by_type.tsx | 2 +- .../components/notebook/settings/index.tsx | 3 +- src/gui/components/notebook/table.tsx | 2 +- src/gui/pages/notebook.tsx | 2 +- src/gui/pages/record-create.tsx | 3 +- src/gui/pages/record.tsx | 4 +- src/sync/index.ts | 97 --- src/sync/process-initialization.ts | 2 +- src/sync/projects.ts | 645 +++++++++++------- 11 files changed, 421 insertions(+), 393 deletions(-) diff --git a/src/databaseAccess.tsx b/src/databaseAccess.tsx index e638f84a2..e65602e68 100644 --- a/src/databaseAccess.tsx +++ b/src/databaseAccess.tsx @@ -29,20 +29,12 @@ * (Sync refactor) */ -import {DEBUG_APP} from './buildconfig'; -import { - ProjectID, - ListingID, - split_full_project_id, - resolve_project_id, -} from 'faims3-datamodel'; +import {ListingID, resolve_project_id} from 'faims3-datamodel'; import {ProjectObject} from 'faims3-datamodel'; import {ProjectInformation, ListingInformation} from 'faims3-datamodel'; -import {all_projects_updated, createdListings} from './sync/state'; +import {createdListings} from './sync/state'; import {events} from './sync/events'; import {getAllListings} from './sync'; -import {listenProject} from './sync/projects'; -import {getProject} from './sync/projects'; import {shouldDisplayProject} from './users'; import {projectIsActivated} from './sync/projects'; @@ -109,46 +101,6 @@ export function listenProjectList(listener: () => void): () => void { }; } -export async function getProjectInfo( - project_id: ProjectID -): Promise { - const proj = await getProject(project_id); - - const split_id = split_full_project_id(project_id); - return { - project_id: project_id, - name: proj.project.name, - description: proj.project.description || 'No description', - last_updated: proj.project.last_updated || 'Unknown', - created: proj.project.created || 'Unknown', - status: proj.project.status || 'Unknown', - is_activated: true, - listing_id: split_id.listing_id, - non_unique_project_id: split_id.project_id, - }; -} - -export function listenProjectInfo( - project_id: ProjectID, - listener: () => unknown | Promise, - error: (err: any) => void -): () => void { - return listenProject( - project_id, - (value, throw_error) => { - const retval = listener(); - if (DEBUG_APP) { - console.log('listenProjectInfo', value, throw_error, retval); - } - if (typeof retval === 'object' && retval !== null && 'catch' in retval) { - (retval as {catch: (err: unknown) => unknown}).catch(throw_error); - } - return 'noop'; - }, - error - ); -} - export async function getSyncableListingsInfo(): Promise { const all_listings = await getAllListings(); const syncable_listings: ListingInformation[] = []; diff --git a/src/gui/components/metadataRenderer.tsx b/src/gui/components/metadataRenderer.tsx index 0dc23af04..e24dbc7ed 100644 --- a/src/gui/components/metadataRenderer.tsx +++ b/src/gui/components/metadataRenderer.tsx @@ -23,7 +23,7 @@ import {CircularProgress, Chip} from '@mui/material'; import {getProjectMetadata} from '../../projectMetadata'; import {ProjectID} from 'faims3-datamodel'; -import {listenProjectDB} from '../../sync'; +import {listenProjectDB} from '../../sync/projects'; import {useEventedPromise, constantArgsSplit} from '../pouchHook'; import {DEBUG_APP} from '../../buildconfig'; diff --git a/src/gui/components/notebook/add_record_by_type.tsx b/src/gui/components/notebook/add_record_by_type.tsx index 31c388625..95b7f8fe6 100644 --- a/src/gui/components/notebook/add_record_by_type.tsx +++ b/src/gui/components/notebook/add_record_by_type.tsx @@ -9,7 +9,7 @@ import AddIcon from '@mui/icons-material/Add'; import * as ROUTES from '../../../constants/routes'; import {getUiSpecForProject} from '../../../uiSpecification'; -import {listenProjectDB} from '../../../sync'; +import { listenProjectDB } from '../../../sync/projects'; import {useEventedPromise, constantArgsSplit} from '../../pouchHook'; import {QRCodeButton} from '../../fields/qrcode/QRCodeFormField'; import { diff --git a/src/gui/components/notebook/settings/index.tsx b/src/gui/components/notebook/settings/index.tsx index acb7e4c53..0d3d02e6c 100644 --- a/src/gui/components/notebook/settings/index.tsx +++ b/src/gui/components/notebook/settings/index.tsx @@ -31,7 +31,8 @@ import { Switch, } from '@mui/material'; -import {getProjectInfo, listenProjectInfo} from '../../../../databaseAccess'; +import {listenProjectInfo} from '../../../../sync/projects'; +import {getProjectInfo} from '../../../../sync/projects'; import {useEventedPromise, constantArgsShared} from '../../../pouchHook'; import {ProjectInformation} from 'faims3-datamodel'; import {ProjectID} from 'faims3-datamodel'; diff --git a/src/gui/components/notebook/table.tsx b/src/gui/components/notebook/table.tsx index 9c05ea231..d65b81491 100644 --- a/src/gui/components/notebook/table.tsx +++ b/src/gui/components/notebook/table.tsx @@ -36,7 +36,7 @@ import { getRecordsWithRegex, } from 'faims3-datamodel'; import {useEventedPromise, constantArgsSplit} from '../../pouchHook'; -import {listenDataDB} from '../../../sync'; +import { listenDataDB } from '../../../sync/projects'; import {DEBUG_APP} from '../../../buildconfig'; import {NotebookDataGridToolbar} from './datagrid_toolbar'; import getLocalDate from '../../fields/LocalDate'; diff --git a/src/gui/pages/notebook.tsx b/src/gui/pages/notebook.tsx index 2dcc1c866..6634ef253 100644 --- a/src/gui/pages/notebook.tsx +++ b/src/gui/pages/notebook.tsx @@ -24,7 +24,7 @@ import FolderIcon from '@mui/icons-material/Folder'; import Breadcrumbs from '../components/ui/breadcrumbs'; import * as ROUTES from '../../constants/routes'; -import {getProjectInfo} from '../../databaseAccess'; +import {getProjectInfo} from '../../sync/projects'; import {ProjectID} from 'faims3-datamodel'; import {CircularProgress} from '@mui/material'; diff --git a/src/gui/pages/record-create.tsx b/src/gui/pages/record-create.tsx index 1189b5dcd..e525b3426 100644 --- a/src/gui/pages/record-create.tsx +++ b/src/gui/pages/record-create.tsx @@ -43,7 +43,8 @@ import TabContext from '@mui/lab/TabContext'; import TabList from '@mui/lab/TabList'; import TabPanel from '@mui/lab/TabPanel'; import {generateFAIMSDataID} from 'faims3-datamodel'; -import {getProjectInfo, listenProjectInfo} from '../../databaseAccess'; +import { listenProjectInfo } from '../../sync/projects'; +import { getProjectInfo } from '../../sync/projects'; import {ProjectID, RecordID} from 'faims3-datamodel'; import { ProjectUIModel, diff --git a/src/gui/pages/record.tsx b/src/gui/pages/record.tsx index abcff4b00..b98c7df5e 100644 --- a/src/gui/pages/record.tsx +++ b/src/gui/pages/record.tsx @@ -38,7 +38,8 @@ import TabPanel from '@mui/lab/TabPanel'; import {ActionType} from '../../context/actions'; import * as ROUTES from '../../constants/routes'; -import {getProjectInfo, listenProjectInfo} from '../../databaseAccess'; +import { listenProjectInfo } from '../../sync/projects'; +import {getProjectInfo} from '../../sync/projects'; import { ProjectID, RecordID, @@ -114,6 +115,7 @@ export default function Record() { const [value, setValue] = React.useState('1'); + // getting project info here but we only really want the name let project_info: ProjectInformation | null; try { project_info = useEventedPromise( diff --git a/src/sync/index.ts b/src/sync/index.ts index 1316a7fc4..b01406e5e 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -25,7 +25,6 @@ import PouchDB from 'pouchdb-browser'; import PouchDBFind from 'pouchdb-find'; import pouchdbDebug from 'pouchdb-debug'; import {ProjectID} from 'faims3-datamodel'; -import {DEBUG_APP} from '../buildconfig'; import {ProjectDataObject, ProjectMetaObject} from 'faims3-datamodel'; import { data_dbs, @@ -33,8 +32,6 @@ import { metadata_dbs, directory_db, } from './databases'; -import {all_projects_updated} from './state'; -import {listenProject} from './projects'; PouchDB.plugin(PouchDBFind); PouchDB.plugin(pouchdbDebug); @@ -114,64 +111,6 @@ export async function getDataDB( } } -/** - * Allows you to listen for changes from a Project's Data DB. - * This is a working alternative to getDataDB.changes - * (as getDataDB.changes that may detach after updates to the owning listing - * or the owning active DB, or if the sync is toggled on/off) - * - * @param active_id Project ID to listen on the DB for. - * @param change_opts - * @param change_listener - * @param error_listener - * @returns Detach function: call this to stop all changes - */ -export function listenDataDB( - active_id: ProjectID, - change_opts: PouchDB.Core.ChangesOptions, - change_listener: ( - value: PouchDB.Core.ChangesResponseChange - ) => any, - error_listener: (value: any) => any -): () => void { - return listenProject( - active_id, - (project, throw_error, _meta_changed, data_changed) => { - if (DEBUG_APP) { - console.info( - 'listenDataDB changed', - project, - throw_error, - _meta_changed, - data_changed - ); - } - if (data_changed) { - const changes = project.data.local.changes(change_opts); - changes.on( - 'change', - (value: PouchDB.Core.ChangesResponseChange) => { - if (DEBUG_APP) { - console.debug('listenDataDB changes', value); - } - return change_listener(value); - } - ); - changes.on('error', throw_error); - return () => { - if (DEBUG_APP) { - console.info('listenDataDB cleanup called'); - } - changes.cancel(); - }; - } else { - return 'keep'; - } - }, - error_listener - ); -} - /** * Returns the current Meta PouchDB of a project. This waits for the initial * sync to finish enough to know if the project exists or not before returning @@ -195,42 +134,6 @@ export async function getProjectDB( } } -/** - * Allows you to listen for changes from a Project's Meta DB. - * This is a working alternative to getProjectDB.changes - * (as getProjectDB.changes that may detach after updates to the owning listing - * or the owning active DB, or if the sync is toggled on/off) - * - * @param active_id Project ID to listen on the DB for. - * @param change_opts - * @param change_listener - * @param error_listener - * @returns Detach function: call this to stop all changes - */ -export function listenProjectDB( - active_id: ProjectID, - change_opts: PouchDB.Core.ChangesOptions, - change_listener: ( - value: PouchDB.Core.ChangesResponseChange - ) => any, - error_listener: (value: any) => any -): () => void { - return listenProject( - active_id, - (project, throw_error, meta_changed) => { - if (meta_changed) { - const changes = project.meta.local.changes(change_opts); - changes.on('change', change_listener); - changes.on('error', throw_error); - return changes.cancel.bind(changes); - } else { - return 'keep'; - } - }, - error_listener - ); -} - // Get all 'listings' (conductor server links) from the local directory database export async function getAllListings(): Promise { const listings: ListingsObject[] = []; diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index bd9317ba2..af695bcba 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -15,7 +15,7 @@ * * Filename: index.ts * Description: - * TODO + * Code used in the initialisation of the app, getting database and projects etc. */ import {CONDUCTOR_URL} from '../buildconfig'; import { diff --git a/src/sync/projects.ts b/src/sync/projects.ts index 96424a31f..1eaef4a0b 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -22,7 +22,6 @@ import { ProjectObject, ProjectMetaObject, ProjectDataObject, - ProjectsList, ProjectInformation, split_full_project_id, ProjectID, @@ -67,10 +66,21 @@ export type createdProjectsInterface = { const createdProjects: {[key: string]: createdProjectsInterface} = {}; +/** + * projectIsActivated + * @param project_id Project identifier + * @returns True if the project is activated for this user + */ export const projectIsActivated = (project_id: string) => { return createdProjects[project_id] !== undefined; }; +/** + * Get pointers to the databases for a project + * @param project_id Project identifier + * @returns The createdProjectInterface record for this project + * @throws an error if the project is not known + */ export const getProject = async ( project_id: ProjectID ): Promise => { @@ -85,33 +95,306 @@ export const getProject = async ( }; /** - * Return all active projects the user has access to. + * Get the details of a project + * Used in a few places just to get the name of the project and in + * NotebookComponent to get the description etc to display + * + * @param project_id Project Identifier + * @returns the ProjectInformation record for this project + */ +export async function getProjectInfo( + project_id: ProjectID +): Promise { + const proj = await getProject(project_id); + + return formatProjectInformation(project_id, proj); +} + +/** + * Get all active projects the user has access to. + * Used to get the list of active projects to create the side menu + * @returns an array of ProjectInformation records */ export const getActiveProjectList = async (): Promise => { //await waitForStateOnce(() => all_projects_updated); const output: ProjectInformation[] = []; - for (const listing_id_project_id in createdProjects) { - if (await shouldDisplayProject(listing_id_project_id)) { - const split_id = split_full_project_id(listing_id_project_id); - output.push({ - name: createdProjects[listing_id_project_id].project.name, - description: createdProjects[listing_id_project_id].project.description, - last_updated: - createdProjects[listing_id_project_id].project.last_updated, - created: createdProjects[listing_id_project_id].project.created, - status: createdProjects[listing_id_project_id].project.status, - project_id: listing_id_project_id, - is_activated: true, - listing_id: split_id.listing_id, - non_unique_project_id: split_id.project_id, - }); + for (const project_id in createdProjects) { + if (await shouldDisplayProject(project_id)) { + output.push( + formatProjectInformation(project_id, createdProjects[project_id]) + ); } } - console.log('returning active projects', output); return output; }; +/** + * Create a project information record in the appropriate format + * + * @param project_id Project identifier + * @param proj createdProjectInterface record (from createdProjects global) + * @returns The ProjectInformation record + */ +function formatProjectInformation( + project_id: string, + proj: createdProjectsInterface +) { + const split_id = split_full_project_id(project_id); + return { + project_id: project_id, + name: proj.project.name, + description: proj.project.description || 'No description', + last_updated: proj.project.last_updated || 'Unknown', + created: proj.project.created || 'Unknown', + status: proj.project.status || 'Unknown', + is_activated: true, + listing_id: split_id.listing_id, + non_unique_project_id: split_id.project_id, + }; +} + +/** + * Deletes a project + * + * Guaranteed to emit the project_updated event before first suspend point + * + * @param active_doc an ActiveDoc object with connection info + * @param project_object Project to delete/undelete + */ +export function delete_project( + active_doc: ExistingActiveDoc, + project_object: ProjectObject +) { + console.log('Deleting project', active_doc, project_object); + // Delete project from memory + const project_id = active_doc.project_id; + + if (metadata_dbs[project_id].remote?.connection !== null) { + metadata_dbs[project_id].local.removeAllListeners(); + metadata_dbs[project_id].remote!.connection!.cancel(); + } + + if (data_dbs[project_id].remote?.connection !== null) { + data_dbs[project_id].local.removeAllListeners(); + data_dbs[project_id].remote!.connection!.cancel(); + } + + delete metadata_dbs[active_doc._id]; + delete data_dbs[active_doc._id]; + delete createdProjects[active_doc._id]; + + // DON'T MOVE THIS PAST AN AWAIT POINT + events.emit( + 'project_update', + ['delete'], + false, + false, + active_doc, + project_object + ); +} + +/** + * Creates or updates the local DBs for a project, using the info + * The databases might already exist in browser local storage, but this + * creates the corresponding PouchDBs. + * + * Sync start/end events are emitted. + * + * Guaranteed to emit the project_updated event before first suspend point + * + * @param active_doc an ActiveDoc object with project connection info + * @param project_object Project to update/create local DB + */ + +export async function ensure_project_databases( + active_doc: ExistingActiveDoc, + project_object: ProjectObject +): Promise { + /** + * Each project needs to know it's active_id to lookup the local + * metadata/data databases. + */ + const active_id = active_doc._id; + + // get meta and data databases for the active project + const [meta_did_change, meta_local] = ensure_local_db( + 'metadata', + active_id, + active_doc.is_sync, + metadata_dbs, + true + ); + const [data_did_change, data_local] = ensure_local_db( + 'data', + active_id, + active_doc.is_sync, + data_dbs, + active_doc.is_sync_attachments + ); + + // These createdProjects objects are created as soon as possible + // (As soon as the DBs are available) + const old_value = createdProjects?.[active_id]; + createdProjects[active_id] = { + project: project_object, + active: active_doc, + meta: meta_local, + data: data_local, + }; + + // DON'T MOVE THIS PAST AN AWAIT POINT + events.emit( + 'project_update', + old_value === undefined ? ['create'] : ['update', old_value], + data_did_change, + meta_did_change, + active_doc, + project_object + ); + + if (meta_did_change) { + events.emit('meta_sync_state', true, active_doc, project_object); + } + + if (data_did_change) { + events.emit('data_sync_state', true, active_doc, project_object); + } + const meta_pause = (_message?: string) => () => { + if (!meta_did_change) return; + events.emit('meta_sync_state', false, active_doc, project_object); + }; + + const data_pause = (_message?: string) => () => { + if (!data_did_change) return; + events.emit('data_sync_state', false, active_doc, project_object); + }; + + // Connect to remote databases + // If we must sync with a remote endpoint immediately, + // do it here: (Otherwise, emit 'paused' anyway to allow + // other parts of FAIMS to continue) + const jwt_token = await getTokenForCluster(active_doc.listing_id); + + // SC: this little dance is because the db_name in PossibleConnectionObject + // which is the type of metadata_db in the project object is possibly + // undefined. This should really not be the case. + // TODO: make sure that all project objects have a proper db_name + let metadata_db_name; + if (project_object.metadata_db?.db_name) + metadata_db_name = project_object.metadata_db.db_name; + else metadata_db_name = 'metadata-' + project_object._id; + + const meta_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: metadata_db_name, + ...project_object.metadata_db, + }; + + let data_db_name; + if (project_object.data_db?.db_name) + data_db_name = project_object.data_db.db_name; + else data_db_name = 'data-' + project_object._id; + + const data_connection_info: ConnectionInfo = { + jwt_token: jwt_token, + db_name: data_db_name, + ...project_object.data_db, + }; + + console.log('update_project data connection', data_connection_info); + + // set up remote sync of metadata database + const [, meta_remote] = ensure_synced_db( + active_id, + meta_connection_info, + metadata_dbs + ); + + if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { + meta_remote.remote.connection!.once('paused', meta_pause('Sync')); + meta_remote.remote + .connection!.on('active', () => { + console.debug('Meta sync started up again', active_id); + throttled_ping_sync_down(); + }) + .on('denied', err => { + console.debug('Meta sync denied', active_id, err); + ping_sync_denied(); + }) + .on('error', (err: any) => { + if (err.status === 401) { + console.debug('Meta sync waiting on auth', active_id); + } else { + console.debug('Meta sync error', active_id, err); + ping_sync_error(); + } + }); + + // set up remote sync for data database + const [, data_remote] = ensure_synced_db( + active_id, + data_connection_info, + data_dbs, + { + push: {}, + pull: {}, + } + ); + + if (data_remote.remote !== null && data_remote.remote.connection !== null) { + data_remote.remote.connection!.once('paused', data_pause('Sync')); + data_remote.remote + .connection!.on('active', () => { + console.debug('Data sync started up again', active_id); + throttled_ping_sync_down(); + throttled_ping_sync_up(); + }) + .on('denied', err => { + console.debug('Data sync denied', active_id, err); + ping_sync_denied(); + }) + .on('error', (err: any) => { + if (err.status === 401) { + console.debug('Data sync waiting on auth', active_id); + } else { + console.debug('Data sync error', active_id, err); + ping_sync_error(); + } + }); + } else { + data_pause('No Sync')(); + } + } else { + meta_pause('Local-only; No Sync')(); + data_pause('Local-only; No Sync')(); + } +} +/** Listeners + * + * These functions set up listeners on the projects database so that + * parts of the UI can be responsive to changes in PouchDB. + * + */ + +/** add a listener for changes on the local project database for a project + * listener will be called for any change in the database and passed + * the changed document as an argument + * @param project_id - project id we are listening for + * @param handler - handler function + */ +export const addProjectListener = ( + project_id: ProjectID, + handler: (doc: any) => Promise +) => { + createdProjects[project_id]!.data.local.changes({ + since: 'now', + live: true, + include_docs: true, + }).on('change', handler); +}; + /** * Allows you to listen for changes from a Project's Data/Meta DBs or other * project info like if it's to be synced or not (from createdProjects) @@ -151,7 +434,6 @@ export const getActiveProjectList = async (): Promise => { * * errors in the destructor from listener * @returns Detach function: call this to stop all changes */ - export const listenProject = ( project_id: ProjectID, listener: ( @@ -348,239 +630,126 @@ export const listenProject = ( }; /** - * Deletes a project - * - * Guaranteed to emit the project_updated event before first suspend point * - * @param active_doc an ActiveDoc object with connection info - * @param project_object Project to delete/undelete + * @param project_id Project Id to listen on the DB for + * @param listener callback function called on any change + * @param error callback function called on any error + * @returns */ -function delete_project( - active_doc: ExistingActiveDoc, - project_object: ProjectObject -) { - console.log('Deleting project', active_doc, project_object); - // Delete project from memory - const project_id = active_doc.project_id; - - if (metadata_dbs[project_id].remote?.connection !== null) { - metadata_dbs[project_id].local.removeAllListeners(); - metadata_dbs[project_id].remote!.connection!.cancel(); - } - - if (data_dbs[project_id].remote?.connection !== null) { - data_dbs[project_id].local.removeAllListeners(); - data_dbs[project_id].remote!.connection!.cancel(); - } - - delete metadata_dbs[active_doc._id]; - delete data_dbs[active_doc._id]; - delete createdProjects[active_doc._id]; - - // DON'T MOVE THIS PAST AN AWAIT POINT - events.emit( - 'project_update', - ['delete'], - false, - false, - active_doc, - project_object +export function listenProjectInfo( + project_id: ProjectID, + listener: () => unknown | Promise, + error: (err: any) => void +): () => void { + return listenProject( + project_id, + (value, throw_error) => { + const retval = listener(); + if (DEBUG_APP) { + console.log('listenProjectInfo', value, throw_error, retval); + } + if (typeof retval === 'object' && retval !== null && 'catch' in retval) { + (retval as {catch: (err: unknown) => unknown}).catch(throw_error); + } + return 'noop'; + }, + error ); } /** - * Creates or updates the local DBs for a project, using the info - * The databases might already exist in browser local storage, but this - * creates the corresponding PouchDBs. - * - * Sync start/end events are emitted. - * - * Guaranteed to emit the project_updated event before first suspend point + * Allows you to listen for changes from a Project's Meta DB. + * This is a working alternative to getProjectDB.changes + * (as getProjectDB.changes that may detach after updates to the owning listing + * or the owning active DB, or if the sync is toggled on/off) * - * @param active_doc an ActiveDoc object with project connection info - * @param project_object Project to update/create local DB + * @param active_id Project ID to listen on the DB for. + * @param change_opts + * @param change_listener + * @param error_listener + * @returns Detach function: call this to stop all changes */ -export async function ensure_project_databases( - active_doc: ExistingActiveDoc, - project_object: ProjectObject -): Promise { - /** - * Each project needs to know it's active_id to lookup the local - * metadata/data databases. - */ - const active_id = active_doc._id; - console.debug('Ensure project databases', active_doc, project_object); - - // get meta and data databases for the active project - const [meta_did_change, meta_local] = ensure_local_db( - 'metadata', +export function listenProjectDB( + active_id: ProjectID, + change_opts: PouchDB.Core.ChangesOptions, + change_listener: ( + value: PouchDB.Core.ChangesResponseChange + ) => any, + error_listener: (value: any) => any +): () => void { + return listenProject( active_id, - active_doc.is_sync, - metadata_dbs, - true - ); - const [data_did_change, data_local] = ensure_local_db( - 'data', - active_id, - active_doc.is_sync, - data_dbs, - active_doc.is_sync_attachments - ); - - // These createdProjects objects are created as soon as possible - // (As soon as the DBs are available) - const old_value = createdProjects?.[active_id]; - createdProjects[active_id] = { - project: project_object, - active: active_doc, - meta: meta_local, - data: data_local, - }; - - // DON'T MOVE THIS PAST AN AWAIT POINT - events.emit( - 'project_update', - old_value === undefined ? ['create'] : ['update', old_value], - data_did_change, - meta_did_change, - active_doc, - project_object + (project, throw_error, meta_changed) => { + if (meta_changed) { + const changes = project.meta.local.changes(change_opts); + changes.on('change', change_listener); + changes.on('error', throw_error); + return changes.cancel.bind(changes); + } else { + return 'keep'; + } + }, + error_listener ); +} - if (meta_did_change) { - events.emit('meta_sync_state', true, active_doc, project_object); - } - - if (data_did_change) { - events.emit('data_sync_state', true, active_doc, project_object); - } - const meta_pause = (message?: string) => () => { - if (!meta_did_change) return; - console.debug(`Metadata settled for ${active_id} (${message})`); - events.emit('meta_sync_state', false, active_doc, project_object); - }; - - const data_pause = (message?: string) => () => { - if (!data_did_change) return; - console.debug(`Data settled for ${active_id} (${message})`); - events.emit('data_sync_state', false, active_doc, project_object); - }; - - // Connect to remote databases - // If we must sync with a remote endpoint immediately, - // do it here: (Otherwise, emit 'paused' anyway to allow - // other parts of FAIMS to continue) - const jwt_token = await getTokenForCluster(active_doc.listing_id); - - // SC: this little dance is because the db_name in PossibleConnectionObject - // which is the type of metadata_db in the project object is possibly - // undefined. This should really not be the case. - // TODO: make sure that all project objects have a proper db_name - let metadata_db_name; - if (project_object.metadata_db?.db_name) - metadata_db_name = project_object.metadata_db.db_name; - else metadata_db_name = 'metadata-' + project_object._id; - - const meta_connection_info: ConnectionInfo = { - jwt_token: jwt_token, - db_name: metadata_db_name, - ...project_object.metadata_db, - }; - - let data_db_name; - if (project_object.data_db?.db_name) - data_db_name = project_object.data_db.db_name; - else data_db_name = 'data-' + project_object._id; - - const data_connection_info: ConnectionInfo = { - jwt_token: jwt_token, - db_name: data_db_name, - ...project_object.data_db, - }; - - console.log('update_project data connection', data_connection_info); +/** + * Allows you to listen for changes from a Project's Data DB. + * This is a working alternative to getDataDB.changes + * (as getDataDB.changes that may detach after updates to the owning listing + * or the owning active DB, or if the sync is toggled on/off) + * + * @param active_id Project ID to listen on the DB for. + * @param change_opts + * @param change_listener + * @param error_listener + * @returns Detach function: call this to stop all changes + */ - // set up remote sync of metadata database - const [, meta_remote] = ensure_synced_db( +export function listenDataDB( + active_id: ProjectID, + change_opts: PouchDB.Core.ChangesOptions, + change_listener: ( + value: PouchDB.Core.ChangesResponseChange + ) => any, + error_listener: (value: any) => any +): () => void { + console.log('listenDataBD starting', active_id); + return listenProject( active_id, - meta_connection_info, - metadata_dbs - ); - - if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { - meta_remote.remote.connection!.once('paused', meta_pause('Sync')); - meta_remote.remote - .connection!.on('active', () => { - console.debug('Meta sync started up again', active_id); - throttled_ping_sync_down(); - }) - .on('denied', err => { - console.debug('Meta sync denied', active_id, err); - ping_sync_denied(); - }) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Meta sync waiting on auth', active_id); - } else { - console.debug('Meta sync error', active_id, err); - ping_sync_error(); - } - }); - - // set up remote sync for data database - const [, data_remote] = ensure_synced_db( - active_id, - data_connection_info, - data_dbs, - { - push: {}, - pull: {}, + (project, throw_error, _meta_changed, data_changed) => { + if (DEBUG_APP) { + console.info( + 'listenDataDB changed', + project, + throw_error, + _meta_changed, + data_changed + ); } - ); - - if (data_remote.remote !== null && data_remote.remote.connection !== null) { - data_remote.remote.connection!.once('paused', data_pause('Sync')); - data_remote.remote - .connection!.on('active', () => { - console.debug('Data sync started up again', active_id); - throttled_ping_sync_down(); - throttled_ping_sync_up(); - }) - .on('denied', err => { - console.debug('Data sync denied', active_id, err); - ping_sync_denied(); - }) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Data sync waiting on auth', active_id); - } else { - console.debug('Data sync error', active_id, err); - ping_sync_error(); + if (data_changed) { + const changes = project.data.local.changes(change_opts); + changes.on( + 'change', + (value: PouchDB.Core.ChangesResponseChange) => { + if (DEBUG_APP) { + console.debug('listenDataDB changes', value); + } + return change_listener(value); } - }); - } else { - data_pause('No Sync')(); - } - } else { - meta_pause('Local-only; No Sync')(); - data_pause('Local-only; No Sync')(); - } + ); + changes.on('error', throw_error); + return () => { + if (DEBUG_APP) { + console.info('listenDataDB cleanup called'); + } + changes.cancel(); + }; + } else { + return 'keep'; + } + }, + error_listener + ); } - -/** add a listener for changes on the local project database for a project - * listener will be called for any change in the database and passed - * the changed document as an argument - * @param project_id - project id we are listening for - * @param handler - handler function - */ -export const addProjectListener = ( - project_id: ProjectID, - handler: (doc: any) => Promise -) => { - createdProjects[project_id]!.data.local.changes({ - since: 'now', - live: true, - include_docs: true, - }).on('change', handler); -}; From 439e15c7def6467e2f07c9e875e129869d129fbc Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Thu, 11 Jul 2024 19:31:08 +1000 Subject: [PATCH 29/43] get project metadata via the API - initial cut Signed-off-by: Steve Cassidy --- src/databaseAccess.tsx | 51 +---- .../notebook/settings/sync_switch.tsx | 4 +- src/gui/components/workspace/notebooks.tsx | 1 - src/setupTests.ts | 34 ++++ src/sync/databases.ts | 4 +- src/sync/events.ts | 2 +- src/sync/index.ts | 32 ++- src/sync/metadata.test.ts | 74 +++++++ src/sync/metadata.ts | 121 +++++++++++ src/sync/process-initialization.ts | 27 +-- src/sync/projects.ts | 191 ++++++++++-------- src/sync/stateful-event-handling.ts | 4 +- 12 files changed, 376 insertions(+), 169 deletions(-) create mode 100644 src/sync/metadata.test.ts create mode 100644 src/sync/metadata.ts diff --git a/src/databaseAccess.tsx b/src/databaseAccess.tsx index e65602e68..df0e6fced 100644 --- a/src/databaseAccess.tsx +++ b/src/databaseAccess.tsx @@ -29,67 +29,26 @@ * (Sync refactor) */ -import {ListingID, resolve_project_id} from 'faims3-datamodel'; -import {ProjectObject} from 'faims3-datamodel'; +import {getAvailableProjectsFromListing} from './sync/projects'; import {ProjectInformation, ListingInformation} from 'faims3-datamodel'; -import {createdListings} from './sync/state'; +import {getAllListingIDs} from './sync/state'; import {events} from './sync/events'; import {getAllListings} from './sync'; -import {shouldDisplayProject} from './users'; -import {projectIsActivated} from './sync/projects'; - -async function getAvailableProjectsFromListing( - listing_id: ListingID -): Promise { - const output: ProjectInformation[] = []; - const projects: ProjectObject[] = []; - const projects_db = createdListings[listing_id].projects.local; - const res = await projects_db.allDocs({ - include_docs: true, - }); - res.rows.forEach(e => { - if (e.doc !== undefined && !e.id.startsWith('_')) { - projects.push(e.doc as ProjectObject); - } - }); - for (const project of projects) { - const project_id = project._id; - const full_project_id = resolve_project_id(listing_id, project_id); - if (await shouldDisplayProject(full_project_id)) { - output.push({ - name: project.name, - description: project.description, - last_updated: project.last_updated, - created: project.created, - status: project.status, - project_id: full_project_id, - is_activated: projectIsActivated(full_project_id), - listing_id: listing_id, - non_unique_project_id: project_id, - }); - } - } - console.log('got these projects from', listing_id, output); - return output; -} export async function getAllProjectList(): Promise { /** - * Return all projects the user has access to. + * Return all projects the user has access to from all servers */ - console.log('getAllProjectList', createdListings); //await waitForStateOnce(() => all_projects_updated); - const output: ProjectInformation[] = []; - for (const listing_id in createdListings) { - console.log('getting for', listing_id); + const output: ProjectInformation[] = []; + for (const listing_id of getAllListingIDs()) { const projects = await getAvailableProjectsFromListing(listing_id); for (const proj of projects) { output.push(proj); } } - console.debug('All project list output', output); return output; } diff --git a/src/gui/components/notebook/settings/sync_switch.tsx b/src/gui/components/notebook/settings/sync_switch.tsx index 49f412043..459927ff9 100644 --- a/src/gui/components/notebook/settings/sync_switch.tsx +++ b/src/gui/components/notebook/settings/sync_switch.tsx @@ -100,8 +100,8 @@ export default function NotebookSyncSwitch(props: NotebookSyncSwitchProps) { .then(async () => { await handleStartSync(); setIsWorking(false); // unblock the UI - console.log('calling handleNotebookActivation', props.handleNotebookActivation); - props.handleNotebookActivation !== undefined && props.handleNotebookActivation(); + props.handleNotebookActivation !== undefined && + props.handleNotebookActivation(); }) .catch(e => { dispatch({ diff --git a/src/gui/components/workspace/notebooks.tsx b/src/gui/components/workspace/notebooks.tsx index 8237c9b66..ccb82358a 100644 --- a/src/gui/components/workspace/notebooks.tsx +++ b/src/gui/components/workspace/notebooks.tsx @@ -72,7 +72,6 @@ export default function NoteBooks(props: NoteBookListProps) { const updateProjectList = () => { getAllProjectList().then(projectList => { - console.log('got projects', projectList); setPouchProjectList(projectList); setLoading(false); }); diff --git a/src/setupTests.ts b/src/setupTests.ts index bc7c57032..31604fdbb 100644 --- a/src/setupTests.ts +++ b/src/setupTests.ts @@ -27,4 +27,38 @@ import PouchDB from 'pouchdb-browser'; import PouchDBAdaptorMemory from 'pouchdb-adapter-memory'; +import {ProjectID} from 'faims3-datamodel'; +import {vi} from 'vitest'; +import {createdProjectsInterface} from './sync/projects'; PouchDB.plugin(PouchDBAdaptorMemory); + +const projdbs: any = {}; + +async function mockProjectDB(project_id: ProjectID) { + if (projdbs[project_id] === undefined) { + const db = new PouchDB(project_id, {adapter: 'memory'}); + projdbs[project_id] = db; + } + return projdbs[project_id]; +} + +// async function cleanProjectDBS() { +// let db; +// for (const project_id in projdbs) { +// db = projdbs[project_id]; +// delete projdbs[project_id]; + +// if (db !== undefined) { +// try { +// await db.destroy(); +// //await db.close(); +// } catch (err) { +// console.error(err); +// } +// } +// } +// } + +vi.mock('./sync/index', () => ({ + getProjectDB: mockProjectDB, +})); diff --git a/src/sync/databases.ts b/src/sync/databases.ts index 4868ecc14..dd1438b9b 100644 --- a/src/sync/databases.ts +++ b/src/sync/databases.ts @@ -29,12 +29,12 @@ import { import { ProjectMetaObject, ProjectDataObject, - ProjectObject, ProjectID, ListingID, NonUniqueProjectID, PossibleConnectionInfo, } from 'faims3-datamodel'; +import {ProjectObject} from './projects'; import {logError} from '../logging'; import { ConnectionInfo, @@ -240,10 +240,12 @@ export function ensure_local_db( global_dbs: LocalDBList, start_sync_attachments: boolean ): [boolean, LocalDB] { + console.log('ensure_local_db', prefix, local_db_id, global_dbs); if (global_dbs[local_db_id]) { global_dbs[local_db_id].is_sync = start_sync; return [false, global_dbs[local_db_id]]; } else { + console.log('creating a new db', prefix, local_db_id); const db = new PouchDB( prefix + POUCH_SEPARATOR + local_db_id, local_pouch_options diff --git a/src/sync/events.ts b/src/sync/events.ts index 961cfb232..544308b43 100644 --- a/src/sync/events.ts +++ b/src/sync/events.ts @@ -24,7 +24,7 @@ import {EventEmitter} from 'events'; import {DEBUG_APP} from '../buildconfig'; import {ListingID} from 'faims3-datamodel'; -import {ProjectObject} from 'faims3-datamodel'; +import {ProjectObject} from './projects'; import {ListingsObject, ExistingActiveDoc} from './databases'; import {createdListingsInterface} from './state'; import {createdProjectsInterface} from './projects'; diff --git a/src/sync/index.ts b/src/sync/index.ts index b01406e5e..6a222fb98 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -89,48 +89,40 @@ export async function waitForStateOnce( } /** - * Returns the current Data PouchDB of a project. This waits for the initial - * sync to finish enough to know if the project exists or not before returning - * (Hence, use this instead of createdProjects) + * Returns the current Data PouchDB of a project. * * @param active_id Full Project ID to get Pouch data DB of. - * @returns Pouch Data DB (May become invalid at some point in the future, - * If, for example, the project changes remote DB. - * Make sure to use listenProject to avoid this) + * @returns Pouch Data DB */ export async function getDataDB( active_id: ProjectID ): Promise> { - // Wait for all_projects_updated to possibly change before returning - // error/data DB if it's ready. - //await waitForStateOnce(() => all_projects_updated); if (active_id in data_dbs) { return data_dbs[active_id].local; } else { - throw `Project ${active_id} is not known`; + throw `Data DB of project ${active_id} is not known`; } } /** - * Returns the current Meta PouchDB of a project. This waits for the initial - * sync to finish enough to know if the project exists or not before returning - * (Hence, use this instead of createdProjects) + * Returns the current Meta PouchDB of a project. * * @param active_id Full Project ID to get Pouch data DB of. - * @returns Pouch Data DB (May become invalid at some point in the future, - * If, for example, the project changes remote DB. - * Make sure to use listenProject to avoid this) + * @returns Pouch Data DB */ export async function getProjectDB( active_id: ProjectID ): Promise> { - // Wait for all_projects_updated to possibly change before returning - // error/data DB if it's ready. - //await waitForStateOnce(() => all_projects_updated); if (active_id in metadata_dbs) { return metadata_dbs[active_id].local; } else { - throw `Project ${active_id} is not known`; + console.log( + '%cgetProjectDB', + 'background-color: green', + active_id, + metadata_dbs + ); + throw `Meta DB of project ${active_id} is not known`; } } diff --git a/src/sync/metadata.test.ts b/src/sync/metadata.test.ts new file mode 100644 index 000000000..875512f62 --- /dev/null +++ b/src/sync/metadata.test.ts @@ -0,0 +1,74 @@ +/* + * Copyright 2021, 2022 Macquarie University + * + * Licensed under the Apache License Version 2.0 (the, "License"); + * you may not use, this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing software + * distributed under the License is distributed on an "AS IS" BASIS + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND either express or implied. + * See, the License, for the specific language governing permissions and + * limitations under the License. + * + * Filename: metadata.test.ts + * Description: + * Tests for getting/setting metadata + */ + +import {expect, test} from 'vitest'; +import {fetchProjectMetadata, getMetadataValue, PropertyMap} from './metadata'; + +import {afterAll, afterEach, beforeAll} from 'vitest'; +import {setupServer} from 'msw/node'; +import {HttpResponse, http} from 'msw'; +import {getProjectDB} from '.'; + +const project_id = 'sample-notebook'; +const conductor_url = 'http://conductor'; + +const notebook = { + metadata: { + name: 'Test Notebook', + project_lead: 'A. N. Other', + }, + 'ui-specification': { + fields: {}, + fviews: {}, + viewsets: {}, + visible_types: [], + }, +}; + +const restHandlers = [ + http.get(`${conductor_url}/api/notebooks/${project_id}`, () => { + return HttpResponse.json(notebook); + }), +]; + +const server = setupServer(...restHandlers); + +server.events.on('request:start', ({request}) => { + console.log('MSW intercepted:', request.method, request.url); +}); +// Start server before all tests +beforeAll(() => server.listen()); + +// Close server after all tests +afterAll(() => server.close()); + +// Reset handlers after each test `important for test isolation` +afterEach(() => server.resetHandlers()); + +test('fetch project metadata', async () => { + await fetchProjectMetadata(conductor_url, project_id); + + const db = await getProjectDB(project_id); + const metaDoc = (await db.get('metadata')) as PropertyMap; + expect(metaDoc.name).toBe(notebook.metadata.name); + + const name = await getMetadataValue(project_id, 'name'); + expect(name).toBe(notebook.metadata.name); +}); diff --git a/src/sync/metadata.ts b/src/sync/metadata.ts new file mode 100644 index 000000000..26fba57c2 --- /dev/null +++ b/src/sync/metadata.ts @@ -0,0 +1,121 @@ +/* + * Copyright 2021, 2022 Macquarie University + * + * Licensed under the Apache License Version 2.0 (the, "License"); + * you may not use, this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing software + * distributed under the License is distributed on an "AS IS" BASIS + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND either express or implied. + * See, the License, for the specific language governing permissions and + * limitations under the License. + * + * Filename: metadata.ts + * Description: + * Getting metadata from the server and providing an interface to + * the rest of the app. + * + */ + +import {EncodedProjectUIModel, ProjectID, ProjectObject} from 'faims3-datamodel'; +import {getProjectDB} from '.'; +import {getTokenForCluster} from '../users'; +import {createdListingsInterface, getListing} from './state'; +import {ListingsObject} from './databases'; + +export type PropertyMap = { + [key: string]: unknown; +}; +/** + * Fetch project metadata from the server and store it locally for + * later access. + * + * @param project_id project identifier + */ +export const fetchProjectMetadata = async ( + lst: createdListingsInterface, + project_id: string +) => { + const url = `${lst.listing.conductor_url}/api/notebooks/${project_id}`; + const jwt_token = await getTokenForCluster(lst.listing._id); + const full_project_id = lst.listing._id + '||' + project_id; + console.log('requesting', url); + const response = await fetch(url, { + headers: { + Authorization: `Bearer ${jwt_token}`, + }, + }); + const notebook = await response.json(); + const metadata = notebook.metadata; + const uiSpec = notebook['ui-specification'] as EncodedProjectUIModel; + + console.log('notebook', notebook); + + // store them in the local database + const metaDB = await getProjectDB(full_project_id); + + try { + const existing = await metaDB.get('metadata'); + metadata._rev = existing._rev; + } catch { + // nop + } + + try { + const existing = await metaDB.get('ui-specification'); + uiSpec._rev = existing._rev; + } catch { + // nop + } + + // insert the two documents + metaDB.put({ + ...metadata, + _id: 'metadata', + }); + + metaDB.put({ + ...uiSpec, + _id: 'ui-specification', + }); +}; + +/** + * Get a metadata value for a project. + * + * TODO: Note that this ignores attachments but I'm fairly sure that they are broken + * anyway since we moved to the new designer - need to re-implement attachments + * in designer and mirror here. + * + * @param project_id Project identifier + * @param key metadata key to lookup + * @returns the value of the given key for this project or undefined if not present + */ +export const getMetadataValue = async (project_id: string, key: string) => { + const metaDB = await getProjectDB(project_id); + try { + const metadata = (await metaDB.get('metadata')) as PropertyMap; + return metadata[key]; + } catch { + return undefined; + } +}; + +/** + * Get the entire metadata for a project + * + * @param project_id Project identifier + * @returns all metadata values as a PropertyMap + */ +export const getAllMetadata = async (project_id: string) => { + const metaDB = await getProjectDB(project_id); + try { + const metadata = (await metaDB.get('metadata')) as PropertyMap; + return metadata; + } catch { + return undefined; + } +} \ No newline at end of file diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index af695bcba..d4f275348 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -25,7 +25,7 @@ import { NonUniqueProjectID, resolve_project_id, } from 'faims3-datamodel'; -import {ProjectObject} from 'faims3-datamodel'; +import {ProjectObject} from './projects'; import {logError} from '../logging'; import {getTokenForCluster} from '../users'; @@ -38,7 +38,7 @@ import { projects_dbs, } from './databases'; import {events} from './events'; -import {createdListings} from './state'; +import {addOrUpdateListing, deleteListing, getListing} from './state'; import {getAllListings} from '.'; import {ensure_project_databases} from './projects'; @@ -51,6 +51,7 @@ export async function update_directory() { const url = new URL(CONDUCTOR_URL); + // TODO: the name and description should come from the api const listing = { _id: url.host.replaceAll('.', '-'), conductor_url: CONDUCTOR_URL, @@ -130,7 +131,7 @@ function delete_listing_by_id(listing_id: ListingID) { } delete projects_dbs[listing_id]; - delete createdListings[listing_id]; + deleteListing(listing_id); // DON'T MOVE THIS PAST AN AWAIT POINT events.emit('listing_update', ['delete'], false, false, listing_id); @@ -155,13 +156,8 @@ async function get_projects_from_conductor(listing: ListingsObject) { ); console.log('LOCAL PROJECT', listing._id, projects_local); - const old_value = createdListings?.[listing._id]; - createdListings[listing._id] = { - listing: listing, - projects: projects_local, - }; - - console.log('createdListings', createdListings); + const previous_listing = getListing(listing._id); + addOrUpdateListing(listing._id, listing, projects_local); if (projects_did_change) { console.log('Projects DB has changed...'); @@ -170,7 +166,7 @@ async function get_projects_from_conductor(listing: ListingsObject) { // DON'T MOVE THIS PAST AN AWAIT POINT events.emit( 'listing_update', - old_value === undefined ? ['create'] : ['update', old_value], + previous_listing === undefined ? ['create'] : ['update', previous_listing], projects_did_change, false, listing._id @@ -215,7 +211,14 @@ async function get_projects_from_conductor(listing: ListingsObject) { if (err.name === 'not_found') { console.debug('DIR storing', project_doc._id); // we don't have this project, so store it - return projects_local.local.put(project_doc); + // add in the conductor url we got it from + // TODO: this should already be there in the API + // also that default to CONDUCTOR_URL is because listings + // conductor_url is optional, it shouldn't be... + return projects_local.local.put({ + ...project_doc, + conductor_url: listing.conductor_url || CONDUCTOR_URL, + }); } }); } diff --git a/src/sync/projects.ts b/src/sync/projects.ts index 1eaef4a0b..4cc417af5 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -19,12 +19,15 @@ */ import { - ProjectObject, ProjectMetaObject, ProjectDataObject, ProjectInformation, split_full_project_id, ProjectID, + PossibleConnectionInfo, + NonUniqueProjectID, + ListingID, + resolve_project_id, } from 'faims3-datamodel'; import { ExistingActiveDoc, @@ -35,8 +38,7 @@ import { metadata_dbs, } from './databases'; import {getTokenForCluster, shouldDisplayProject} from '../users'; -import {waitForStateOnce} from '.'; -import {all_projects_updated} from './state'; +import {all_projects_updated, getListing} from './state'; import {DEBUG_APP} from '../buildconfig'; import {logError} from '../logging'; import {events} from './events'; @@ -47,6 +49,24 @@ import { ping_sync_error, throttled_ping_sync_up, } from './connection'; +import {fetchProjectMetadata} from './metadata'; + +/** + * Temporarily override this type from faims3-datamodel to make + * a local change (add conductor_url) + * TODO: re-merge back to faims3-datamodel once monorepo is in place + */ +export interface ProjectObject { + _id: NonUniqueProjectID; + name: string; + description?: string; + last_updated?: string; + created?: string; + status?: string; + conductor_url: string; + data_db?: PossibleConnectionInfo; + metadata_db?: PossibleConnectionInfo; +} export type createdProjectsInterface = { project: ProjectObject; @@ -54,6 +74,7 @@ export type createdProjectsInterface = { meta: LocalDB; data: LocalDB; }; + /** * This is appended to whenever a project has its * meta & data local dbs come into existence. @@ -90,7 +111,7 @@ export const getProject = async ( if (project_id in data_dbs) { return createdProjects[project_id]; } else { - throw `Project ${project_id} is not known`; + throw `Active project ${project_id} is not known`; } }; @@ -107,7 +128,7 @@ export async function getProjectInfo( ): Promise { const proj = await getProject(project_id); - return formatProjectInformation(project_id, proj); + return formatProjectInformation(project_id, proj.project); } /** @@ -122,13 +143,52 @@ export const getActiveProjectList = async (): Promise => { for (const project_id in createdProjects) { if (await shouldDisplayProject(project_id)) { output.push( - formatProjectInformation(project_id, createdProjects[project_id]) + formatProjectInformation( + project_id, + createdProjects[project_id].project + ) ); } } return output; }; +/** + * Get all projects that are available to the current user that + * might not yet be activated + * + * @param listing_id listing identifier + * @returns An array of ProjectInformation objects + */ +export async function getAvailableProjectsFromListing( + listing_id: ListingID +): Promise { + const output: ProjectInformation[] = []; + const projects: ProjectObject[] = []; + const listing = getListing(listing_id); + console.log('listing', listing_id, listing); + if (listing) { + const projects_db = listing.projects.local; + const res = await projects_db.allDocs({ + include_docs: true, + }); + console.log('got project documents', res); + res.rows.forEach(e => { + if (e.doc !== undefined && !e.id.startsWith('_')) { + projects.push(e.doc as ProjectObject); + } + }); + for (const project of projects) { + const project_id = project._id; + const full_project_id = resolve_project_id(listing_id, project_id); + if (await shouldDisplayProject(full_project_id)) { + output.push(formatProjectInformation(full_project_id, project)); + } + } + } + return output; +} + /** * Create a project information record in the appropriate format * @@ -136,19 +196,16 @@ export const getActiveProjectList = async (): Promise => { * @param proj createdProjectInterface record (from createdProjects global) * @returns The ProjectInformation record */ -function formatProjectInformation( - project_id: string, - proj: createdProjectsInterface -) { +function formatProjectInformation(project_id: string, project: ProjectObject) { const split_id = split_full_project_id(project_id); return { project_id: project_id, - name: proj.project.name, - description: proj.project.description || 'No description', - last_updated: proj.project.last_updated || 'Unknown', - created: proj.project.created || 'Unknown', - status: proj.project.status || 'Unknown', - is_activated: true, + name: project.name, + description: project.description || 'No description', + last_updated: project.last_updated || 'Unknown', + created: project.created || 'Unknown', + status: project.status || 'Unknown', + is_activated: projectIsActivated(project_id), listing_id: split_id.listing_id, non_unique_project_id: split_id.project_id, }; @@ -226,6 +283,15 @@ export async function ensure_project_databases( metadata_dbs, true ); + + console.log( + '%cmeta database', + 'background-color: pink', + meta_did_change, + meta_local, + metadata_dbs + ); + const [data_did_change, data_local] = ensure_local_db( 'data', active_id, @@ -254,23 +320,21 @@ export async function ensure_project_databases( project_object ); - if (meta_did_change) { - events.emit('meta_sync_state', true, active_doc, project_object); - } - if (data_did_change) { events.emit('data_sync_state', true, active_doc, project_object); } - const meta_pause = (_message?: string) => () => { - if (!meta_did_change) return; - events.emit('meta_sync_state', false, active_doc, project_object); - }; - const data_pause = (_message?: string) => () => { + const data_pause = () => () => { if (!data_did_change) return; events.emit('data_sync_state', false, active_doc, project_object); }; + console.log('going to get project metadata'); + + // get project metadata and UiSpec and store them in the db + const listing = getListing(active_doc.listing_id); + await fetchProjectMetadata(listing, active_doc.project_id); + // Connect to remote databases // If we must sync with a remote endpoint immediately, // do it here: (Otherwise, emit 'paused' anyway to allow @@ -281,17 +345,6 @@ export async function ensure_project_databases( // which is the type of metadata_db in the project object is possibly // undefined. This should really not be the case. // TODO: make sure that all project objects have a proper db_name - let metadata_db_name; - if (project_object.metadata_db?.db_name) - metadata_db_name = project_object.metadata_db.db_name; - else metadata_db_name = 'metadata-' + project_object._id; - - const meta_connection_info: ConnectionInfo = { - jwt_token: jwt_token, - db_name: metadata_db_name, - ...project_object.metadata_db, - }; - let data_db_name; if (project_object.data_db?.db_name) data_db_name = project_object.data_db.db_name; @@ -305,72 +358,42 @@ export async function ensure_project_databases( console.log('update_project data connection', data_connection_info); - // set up remote sync of metadata database - const [, meta_remote] = ensure_synced_db( + // set up remote sync for data database + const [, data_remote] = ensure_synced_db( active_id, - meta_connection_info, - metadata_dbs + data_connection_info, + data_dbs, + { + push: {}, + pull: {}, + } ); - if (meta_remote.remote !== null && meta_remote.remote.connection !== null) { - meta_remote.remote.connection!.once('paused', meta_pause('Sync')); - meta_remote.remote + if (data_remote.remote !== null && data_remote.remote.connection !== null) { + data_remote.remote.connection!.once('paused', data_pause('Sync')); + data_remote.remote .connection!.on('active', () => { - console.debug('Meta sync started up again', active_id); + console.debug('Data sync started up again', active_id); throttled_ping_sync_down(); + throttled_ping_sync_up(); }) .on('denied', err => { - console.debug('Meta sync denied', active_id, err); + console.debug('Data sync denied', active_id, err); ping_sync_denied(); }) .on('error', (err: any) => { if (err.status === 401) { - console.debug('Meta sync waiting on auth', active_id); + console.debug('Data sync waiting on auth', active_id); } else { - console.debug('Meta sync error', active_id, err); + console.debug('Data sync error', active_id, err); ping_sync_error(); } }); - - // set up remote sync for data database - const [, data_remote] = ensure_synced_db( - active_id, - data_connection_info, - data_dbs, - { - push: {}, - pull: {}, - } - ); - - if (data_remote.remote !== null && data_remote.remote.connection !== null) { - data_remote.remote.connection!.once('paused', data_pause('Sync')); - data_remote.remote - .connection!.on('active', () => { - console.debug('Data sync started up again', active_id); - throttled_ping_sync_down(); - throttled_ping_sync_up(); - }) - .on('denied', err => { - console.debug('Data sync denied', active_id, err); - ping_sync_denied(); - }) - .on('error', (err: any) => { - if (err.status === 401) { - console.debug('Data sync waiting on auth', active_id); - } else { - console.debug('Data sync error', active_id, err); - ping_sync_error(); - } - }); - } else { - data_pause('No Sync')(); - } } else { - meta_pause('Local-only; No Sync')(); - data_pause('Local-only; No Sync')(); + data_pause()(); } } + /** Listeners * * These functions set up listeners on the projects database so that diff --git a/src/sync/stateful-event-handling.ts b/src/sync/stateful-event-handling.ts index 6dd2c67dd..f7f8a19bd 100644 --- a/src/sync/stateful-event-handling.ts +++ b/src/sync/stateful-event-handling.ts @@ -20,8 +20,8 @@ import PouchDB from 'pouchdb-browser'; import EventEmitter from 'events'; -import {ProjectObject, ProjectMetaObject} from 'faims3-datamodel'; -import {ProjectID} from 'faims3-datamodel'; +import {ProjectID, ProjectMetaObject} from 'faims3-datamodel'; +import {ProjectObject} from './projects'; export type ProjectMetaList = { [active_id in ProjectID]: [ From 2c4defa512ed2386a5129eb0ffad05d2fad0da9a Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 09:00:45 +1000 Subject: [PATCH 30/43] fix tests and remove some debugging output Signed-off-by: Steve Cassidy --- src/gui/fields/RichText.test.tsx | 1 - src/gui/fields/utils.tsx | 1 - src/gui/pages/notebook.test.tsx | 2 +- src/sync/metadata.test.ts | 23 +++++++++--- src/sync/metadata.ts | 54 +++++++++++++++++---------- src/sync/projects.ts | 2 +- src/sync/state.ts | 64 ++++++++++++++++++++++++-------- 7 files changed, 104 insertions(+), 43 deletions(-) diff --git a/src/gui/fields/RichText.test.tsx b/src/gui/fields/RichText.test.tsx index 1b10bf7a3..b77800c01 100644 --- a/src/gui/fields/RichText.test.tsx +++ b/src/gui/fields/RichText.test.tsx @@ -39,7 +39,6 @@ it('renders from the uiSpec', async () => { }; const {container} = instantiateField(uiSpec, initialValues); - console.log('XXXX', container.innerHTML); expect(container.innerHTML).toContain('World'); }); diff --git a/src/gui/fields/utils.tsx b/src/gui/fields/utils.tsx index ffd497bd0..3dbac7bb5 100644 --- a/src/gui/fields/utils.tsx +++ b/src/gui/fields/utils.tsx @@ -76,6 +76,5 @@ export const instantiateField = (uiSpec: any, initialValues: any) => { // eslint-disable-next-line @typescript-eslint/ban-ts-comment // @ts-ignore const element = getComponentFromFieldConfig(uiSpec, 'test', formProps); - console.log('ELEMENT', element); return renderForm(element, initialValues); }; diff --git a/src/gui/pages/notebook.test.tsx b/src/gui/pages/notebook.test.tsx index a28499dd5..291362507 100644 --- a/src/gui/pages/notebook.test.tsx +++ b/src/gui/pages/notebook.test.tsx @@ -61,7 +61,7 @@ vi.mock('react-router-dom', () => { }; }); -vi.mock('../../databaseAccess', () => ({ +vi.mock('../../sync/projects', () => ({ getProjectInfo: mockGetProjectInfo, })); diff --git a/src/sync/metadata.test.ts b/src/sync/metadata.test.ts index 875512f62..0ad0cc20d 100644 --- a/src/sync/metadata.test.ts +++ b/src/sync/metadata.test.ts @@ -63,12 +63,25 @@ afterAll(() => server.close()); afterEach(() => server.resetHandlers()); test('fetch project metadata', async () => { - await fetchProjectMetadata(conductor_url, project_id); + const lst = { + listing: { + conductor_url: conductor_url, + _id: 'test', + name: 'test', + description: 'test', + }, + }; + const full_project_id = 'test||' + project_id; - const db = await getProjectDB(project_id); - const metaDoc = (await db.get('metadata')) as PropertyMap; - expect(metaDoc.name).toBe(notebook.metadata.name); + await fetchProjectMetadata(lst, project_id); - const name = await getMetadataValue(project_id, 'name'); + const db = await getProjectDB(full_project_id); + try { + const metaDoc = (await db.get('metadata')) as PropertyMap; + expect(metaDoc.name).toBe(notebook.metadata.name); + } catch { + console.log('error getting test data'); + } + const name = await getMetadataValue(full_project_id, 'name'); expect(name).toBe(notebook.metadata.name); }); diff --git a/src/sync/metadata.ts b/src/sync/metadata.ts index 26fba57c2..7ae0f56a6 100644 --- a/src/sync/metadata.ts +++ b/src/sync/metadata.ts @@ -20,29 +20,42 @@ * */ -import {EncodedProjectUIModel, ProjectID, ProjectObject} from 'faims3-datamodel'; +import {EncodedProjectUIModel} from 'faims3-datamodel'; import {getProjectDB} from '.'; import {getTokenForCluster} from '../users'; -import {createdListingsInterface, getListing} from './state'; -import {ListingsObject} from './databases'; +import {createdListingsInterface} from './state'; export type PropertyMap = { [key: string]: unknown; }; + +/** + * A subset of createdListingInterface - just the bits we + * need to make testing easier + */ +type minimalCreatedListing = + | createdListingsInterface + | { + listing: { + _id: string; + conductor_url: string; + }; + }; + /** * Fetch project metadata from the server and store it locally for * later access. * - * @param project_id project identifier + * @param lst a createdListing entry (or subset for testing) + * @param project_id short project identifier */ export const fetchProjectMetadata = async ( - lst: createdListingsInterface, + lst: minimalCreatedListing, project_id: string ) => { const url = `${lst.listing.conductor_url}/api/notebooks/${project_id}`; const jwt_token = await getTokenForCluster(lst.listing._id); const full_project_id = lst.listing._id + '||' + project_id; - console.log('requesting', url); const response = await fetch(url, { headers: { Authorization: `Bearer ${jwt_token}`, @@ -52,11 +65,8 @@ export const fetchProjectMetadata = async ( const metadata = notebook.metadata; const uiSpec = notebook['ui-specification'] as EncodedProjectUIModel; - console.log('notebook', notebook); - // store them in the local database const metaDB = await getProjectDB(full_project_id); - try { const existing = await metaDB.get('metadata'); metadata._rev = existing._rev; @@ -71,16 +81,22 @@ export const fetchProjectMetadata = async ( // nop } - // insert the two documents - metaDB.put({ - ...metadata, - _id: 'metadata', - }); + console.log('inserting documents'); - metaDB.put({ - ...uiSpec, - _id: 'ui-specification', - }); + try { + // insert the two documents + metaDB.put({ + ...metadata, + _id: 'metadata', + }); + + metaDB.put({ + ...uiSpec, + _id: 'ui-specification', + }); + } catch { + console.log('something went wrong'); + } }; /** @@ -118,4 +134,4 @@ export const getAllMetadata = async (project_id: string) => { } catch { return undefined; } -} \ No newline at end of file +}; diff --git a/src/sync/projects.ts b/src/sync/projects.ts index 4cc417af5..482780e00 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -370,7 +370,7 @@ export async function ensure_project_databases( ); if (data_remote.remote !== null && data_remote.remote.connection !== null) { - data_remote.remote.connection!.once('paused', data_pause('Sync')); + data_remote.remote.connection!.once('paused', data_pause()); data_remote.remote .connection!.on('active', () => { console.debug('Data sync started up again', active_id); diff --git a/src/sync/state.ts b/src/sync/state.ts index d8b781e15..0c191696a 100644 --- a/src/sync/state.ts +++ b/src/sync/state.ts @@ -19,12 +19,8 @@ */ import {ProjectID} from 'faims3-datamodel'; -import { - ProjectObject, - ProjectMetaObject, - isRecord, - mergeHeads, -} from 'faims3-datamodel'; +import {ProjectObject} from './projects'; +import {ProjectMetaObject, isRecord, mergeHeads} from 'faims3-datamodel'; import {ListingsObject, ActiveDoc, LocalDB} from './databases'; import {DirectoryEmitter} from './events'; @@ -37,16 +33,54 @@ export type createdListingsInterface = { }; /** - * This is appended to whenever a listing has its - * projects/people dbs come into existence. (Each individual project - * isn't guaranteed to be in the createdProjects object. Use the - * data_sync_state or project_update events to listen for such changes) + * An object that holds listings and pointers to the local + * projects database for all listings (servers) we know about. + * Accessed via the API functions below. * - * This is the way to get ListingsObjects - * - * Created/Modified by update_listing in process-initialization.ts */ -export const createdListings: {[key: string]: createdListingsInterface} = {}; +const createdListings: {[key: string]: createdListingsInterface} = {}; + +/** + * Add a created listing record + * @param listing_id listing identifier + * @param listing Listing object to insert + */ +export const addOrUpdateListing = ( + listing_id: string, + listing: ListingsObject, + project_db: LocalDB +) => { + createdListings[listing_id] = { + listing: listing, + projects: project_db, + }; +}; + +/** + * Get the listing record for a listing id + * @param listing_id a listing identifier + * @returns the listing if present, undefined if not + */ +export const getListing = (listing_id: string) => { + return createdListings[listing_id]; +}; + +/** + * Delete a listing from the known list + * @param listing_id listing identifier + */ +export const deleteListing = (listing_id: string) => { + if (createdListings[listing_id] !== undefined) + delete createdListings[listing_id]; +}; + +/** + * Get all listing ids we know about. + * @returns an array of known listing ids + */ +export const getAllListingIDs = () => { + return Object.getOwnPropertyNames(createdListings); +}; /** * Value: all listings are reasonably 'known' (i.e. the directory has @@ -225,4 +259,4 @@ export function register_basic_automerge_resolver( } }); }); -} \ No newline at end of file +} From 0654bc8172c0ea8ff700a159a96d77ee45918603 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 09:01:56 +1000 Subject: [PATCH 31/43] Add mock for getting token Signed-off-by: Steve Cassidy --- src/setupTests.ts | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/src/setupTests.ts b/src/setupTests.ts index 31604fdbb..1cf2de579 100644 --- a/src/setupTests.ts +++ b/src/setupTests.ts @@ -29,7 +29,6 @@ import PouchDB from 'pouchdb-browser'; import PouchDBAdaptorMemory from 'pouchdb-adapter-memory'; import {ProjectID} from 'faims3-datamodel'; import {vi} from 'vitest'; -import {createdProjectsInterface} from './sync/projects'; PouchDB.plugin(PouchDBAdaptorMemory); const projdbs: any = {}; @@ -62,3 +61,11 @@ async function mockProjectDB(project_id: ProjectID) { vi.mock('./sync/index', () => ({ getProjectDB: mockProjectDB, })); + +async function mockGetTokenForCluster(listing_id: string) { + return 'token-' + listing_id; +} + +vi.mock('./users', () => ({ + getTokenForCluster: mockGetTokenForCluster, +})); From 1eb2a417f10d5b966b317f8cf2e190c26be66907 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 09:03:17 +1000 Subject: [PATCH 32/43] Add msw for mocking http Signed-off-by: Steve Cassidy --- package-lock.json | 394 ++++++++++++++++++++++++++++++++++++++++++++++ package.json | 1 + 2 files changed, 395 insertions(+) diff --git a/package-lock.json b/package-lock.json index 295944583..074a9b493 100644 --- a/package-lock.json +++ b/package-lock.json @@ -114,6 +114,7 @@ "jsdoc": "^4.0.2", "jsdom": "^22.1.0", "jss": "^10.10.0", + "msw": "^2.3.1", "node-gyp": "^9.3.1", "type-fest": "^4.20.0" }, @@ -618,6 +619,24 @@ "version": "6.0.0", "license": "MIT" }, + "node_modules/@bundled-es-modules/cookie": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/@bundled-es-modules/cookie/-/cookie-2.0.0.tgz", + "integrity": "sha512-Or6YHg/kamKHpxULAdSqhGqnWFneIXu1NKvvfBBzKGwpVsYuFIQ5aBPHDnnoR3ghW1nvSkALd+EF9iMtY7Vjxw==", + "dev": true, + "dependencies": { + "cookie": "^0.5.0" + } + }, + "node_modules/@bundled-es-modules/statuses": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/@bundled-es-modules/statuses/-/statuses-1.0.1.tgz", + "integrity": "sha512-yn7BklA5acgcBr+7w064fGV+SGIFySjCKpqjcWgBAIfrAkY+4GQTJJHQMeT3V/sgz23VTEVV8TtOmkvJAhFVfg==", + "dev": true, + "dependencies": { + "statuses": "^2.0.1" + } + }, "node_modules/@capacitor-mlkit/barcode-scanning": { "version": "6.1.0", "resolved": "https://registry.npmjs.org/@capacitor-mlkit/barcode-scanning/-/barcode-scanning-6.1.0.tgz", @@ -1385,6 +1404,126 @@ "version": "1.2.1", "license": "BSD-3-Clause" }, + "node_modules/@inquirer/confirm": { + "version": "3.1.14", + "resolved": "https://registry.npmjs.org/@inquirer/confirm/-/confirm-3.1.14.tgz", + "integrity": "sha512-nbLSX37b2dGPtKWL3rPuR/5hOuD30S+pqJ/MuFiUEgN6GiMs8UMxiurKAMDzKt6C95ltjupa8zH6+3csXNHWpA==", + "dev": true, + "dependencies": { + "@inquirer/core": "^9.0.2", + "@inquirer/type": "^1.4.0" + }, + "engines": { + "node": ">=18" + } + }, + "node_modules/@inquirer/core": { + "version": "9.0.2", + "resolved": "https://registry.npmjs.org/@inquirer/core/-/core-9.0.2.tgz", + "integrity": 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"resolved": "https://registry.npmjs.org/@types/cordova/-/cordova-11.0.0.tgz", @@ -2795,6 +2988,15 @@ "version": "4.2.2", "license": "MIT" }, + "node_modules/@types/mute-stream": { + "version": "0.0.4", + "resolved": "https://registry.npmjs.org/@types/mute-stream/-/mute-stream-0.0.4.tgz", + "integrity": "sha512-CPM9nzrCPPJHQNA9keH9CVkVI+WR5kMa+7XEs5jcGQ0VoAGnLv242w8lIVgwAEfmE4oufJRaTc9PNLQl0ioAow==", + "dev": true, + "dependencies": { + "@types/node": "*" + } + }, "node_modules/@types/node": { "version": "18.16.3", "license": "MIT" @@ -3042,6 +3244,12 @@ "version": "2.0.1", "license": "MIT" }, + "node_modules/@types/statuses": { + "version": "2.0.5", + "resolved": "https://registry.npmjs.org/@types/statuses/-/statuses-2.0.5.tgz", + "integrity": "sha512-jmIUGWrAiwu3dZpxntxieC+1n/5c3mjrImkmOSQ2NC5uP6cYO4aAZDdSmRcI5C1oiTmqlZGHC+/NmJrKogbP5A==", + "dev": true + }, "node_modules/@types/trusted-types": { "version": "2.0.3", "license": "MIT" @@ -3050,6 +3258,12 @@ "version": "9.0.1", "license": "MIT" }, + "node_modules/@types/wrap-ansi": { + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/@types/wrap-ansi/-/wrap-ansi-3.0.0.tgz", + "integrity": "sha512-ltIpx+kM7g/MLRZfkbL7EsCEjfzCcScLpkg37eXEtx5kmrAKBkTJwd1GIAjDSL8wTpM6Hzn5YO4pSb91BEwu1g==", + "dev": true + }, "node_modules/@types/yargs": { "version": "17.0.24", "license": "MIT", @@ -4114,6 +4328,18 @@ "node": ">=8" } }, + "node_modules/cli-spinners": { + "version": "2.9.2", + "resolved": "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.9.2.tgz", + "integrity": "sha512-ywqV+5MmyL4E7ybXgKys4DugZbX0FC6LnwrhjuykIjnK9k8OQacQ7axGKnjDXWNhns0xot3bZI5h55H8yo9cJg==", + "dev": true, + "engines": { + "node": ">=6" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } + }, "node_modules/cli-width": { "version": "3.0.0", "dev": true, @@ -4122,6 +4348,20 @@ "node": ">= 10" } }, + "node_modules/cliui": { + "version": "8.0.1", + "resolved": "https://registry.npmjs.org/cliui/-/cliui-8.0.1.tgz", + "integrity": "sha512-BSeNnyus75C4//NQ9gQt1/csTXyo/8Sb+afLAkzAptFuMsod9HFokGNudZpi/oQV73hnVK+sR+5PVRMd+Dr7YQ==", + "dev": true, + "dependencies": { + "string-width": "^4.2.0", + "strip-ansi": "^6.0.1", + "wrap-ansi": "^7.0.0" + }, + "engines": { + "node": ">=12" + } + }, "node_modules/clone-buffer": { "version": "1.0.0", "license": "MIT", @@ -4221,6 +4461,15 @@ "version": "1.9.0", "license": "MIT" }, + "node_modules/cookie": { + "version": "0.5.0", + "resolved": "https://registry.npmjs.org/cookie/-/cookie-0.5.0.tgz", + "integrity": "sha512-YZ3GUyn/o8gfKJlnlX7g7xq4gyO6OSuhGPKaaGssGB2qgDUS0gPgtTvoyZLTt9Ab6dC4hfc9dV5arkvc/OCmrw==", + "dev": true, + "engines": { + "node": ">= 0.6" + } + }, "node_modules/core-util-is": { "version": "1.0.2", "license": "MIT" @@ -5942,6 +6191,15 @@ "resolved": "https://registry.npmjs.org/graphemer/-/graphemer-1.4.0.tgz", "integrity": "sha512-EtKwoO6kxCL9WO5xipiHTZlSzBm7WLT627TqC/uVRd0HKmq8NXyebnNYxDoBi7wt8eTWrUrKXCOVaFq9x1kgag==" }, + "node_modules/graphql": { + "version": "16.9.0", + "resolved": "https://registry.npmjs.org/graphql/-/graphql-16.9.0.tgz", + "integrity": "sha512-GGTKBX4SD7Wdb8mqeDLni2oaRGYQWjWHGKPQ24ZMnUtKfcsVoiv4uX8+LJr1K6U5VW2Lu1BwJnj7uiori0YtRw==", + "dev": true, + "engines": { + "node": "^12.22.0 || ^14.16.0 || ^16.0.0 || >=17.0.0" + } + }, "node_modules/gts": { "version": "4.0.1", "resolved": "https://registry.npmjs.org/gts/-/gts-4.0.1.tgz", @@ -6540,6 +6798,12 @@ "node": ">= 0.4" } }, + "node_modules/headers-polyfill": { + "version": "4.0.3", + "resolved": "https://registry.npmjs.org/headers-polyfill/-/headers-polyfill-4.0.3.tgz", + "integrity": "sha512-IScLbePpkvO846sIwOtOTDjutRMWdXdJmXdMvk6gCBHxFO8d+QKOQedyZSxFTTFYRSmlgSTDtXqqq4pcenBXLQ==", + "dev": true + }, "node_modules/hoist-non-react-statics": { "version": "3.3.2", "license": "BSD-3-Clause", @@ -6989,6 +7253,12 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/is-node-process": { + "version": "1.2.0", + "resolved": "https://registry.npmjs.org/is-node-process/-/is-node-process-1.2.0.tgz", + "integrity": "sha512-Vg4o6/fqPxIjtxgUH5QLJhwZ7gW5diGCVlXpuUfELC62CuxM1iHcRe51f2W1FDy04Ai4KJkagKjx3XaqyfRKXw==", + "dev": true + }, "node_modules/is-number": { "version": "7.0.0", "license": "MIT", @@ -8688,6 +8958,49 @@ "version": "2.1.2", "license": "MIT" }, + "node_modules/msw": { + "version": "2.3.1", + "resolved": "https://registry.npmjs.org/msw/-/msw-2.3.1.tgz", + "integrity": "sha512-ocgvBCLn/5l3jpl1lssIb3cniuACJLoOfZu01e3n5dbJrpA5PeeWn28jCLgQDNt6d7QT8tF2fYRzm9JoEHtiig==", + "dev": true, + "hasInstallScript": true, + "dependencies": { + "@bundled-es-modules/cookie": "^2.0.0", + "@bundled-es-modules/statuses": "^1.0.1", + "@inquirer/confirm": "^3.0.0", + "@mswjs/cookies": "^1.1.0", + "@mswjs/interceptors": "^0.29.0", + "@open-draft/until": "^2.1.0", + "@types/cookie": "^0.6.0", + "@types/statuses": "^2.0.4", + "chalk": "^4.1.2", + "graphql": "^16.8.1", + "headers-polyfill": "^4.0.2", + "is-node-process": "^1.2.0", + "outvariant": "^1.4.2", + "path-to-regexp": "^6.2.0", + "strict-event-emitter": "^0.5.1", + "type-fest": "^4.9.0", + "yargs": "^17.7.2" + }, + "bin": { + "msw": "cli/index.js" + }, + "engines": { + "node": ">=18" + }, + "funding": { + "url": "https://github.com/sponsors/mswjs" + }, + "peerDependencies": { + "typescript": ">= 4.7.x" + }, + "peerDependenciesMeta": { + "typescript": { + "optional": true + } + } + }, "node_modules/mustache": { "version": "4.2.0", "license": "MIT", @@ -9321,6 +9634,12 @@ "node": ">=0.10.0" } }, + "node_modules/outvariant": { + "version": "1.4.3", + "resolved": "https://registry.npmjs.org/outvariant/-/outvariant-1.4.3.tgz", + "integrity": "sha512-+Sl2UErvtsoajRDKCE5/dBz4DIvHXQQnAxtQTF04OJxY0+DyZXSo5P5Bb7XYWOh81syohlYL24hbDwxedPUJCA==", + "dev": true + }, "node_modules/p-limit": { "version": "3.1.0", "dev": true, @@ -9495,6 +9814,12 @@ "node": ">=8" } }, + "node_modules/path-to-regexp": { + "version": "6.2.2", + "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-6.2.2.tgz", + "integrity": "sha512-GQX3SSMokngb36+whdpRXE+3f9V8UzyAorlYvOGx87ufGHehNTn5lCxrKtLyZ4Yl/wEKnNnr98ZzOwwDZV5ogw==", + "dev": true + }, "node_modules/path-type": { "version": "4.0.0", "license": "MIT", @@ -11255,6 +11580,15 @@ "version": "1.3.4", "license": "MIT" }, + "node_modules/statuses": { + "version": "2.0.1", + "resolved": "https://registry.npmjs.org/statuses/-/statuses-2.0.1.tgz", + "integrity": "sha512-RwNA9Z/7PrK06rYLIzFMlaF+l73iwpzsqRIFgbMLbTcLD6cOao82TaWefPXQvB2fOC4AjuYSEndS7N/mTCbkdQ==", + "dev": true, + "engines": { + "node": ">= 0.8" + } + }, "node_modules/std-env": { "version": "3.4.3", "resolved": "https://registry.npmjs.org/std-env/-/std-env-3.4.3.tgz", @@ -11277,6 +11611,12 @@ "emitter-component": "^1.1.1" } }, + "node_modules/strict-event-emitter": { + "version": "0.5.1", + "resolved": "https://registry.npmjs.org/strict-event-emitter/-/strict-event-emitter-0.5.1.tgz", + "integrity": "sha512-vMgjE/GGEPEFnhFub6pa4FmJBRBVOLpIII2hvCZ8Kzb7K0hlHo7mQv6xYrBvCL2LtAIBwFUK8wvuJgTVSQ5MFQ==", + "dev": true + }, "node_modules/string_decoder": { "version": "1.3.0", "license": "MIT", @@ -11932,6 +12272,12 @@ "dev": true, "license": "MIT" }, + "node_modules/undici-types": { + "version": "5.26.5", + "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-5.26.5.tgz", + "integrity": "sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA==", + "dev": true + }, "node_modules/universalify": { "version": "2.0.0", "dev": true, @@ -12590,6 +12936,15 @@ "node": ">=0.4" } }, + "node_modules/y18n": { + "version": "5.0.8", + "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz", + "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==", + "dev": true, + "engines": { + "node": ">=10" + } + }, "node_modules/yallist": { "version": "3.1.1", "license": "ISC" @@ -12601,6 +12956,24 @@ "node": ">= 6" } }, + "node_modules/yargs": { + "version": "17.7.2", + "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz", + "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==", + "dev": true, + "dependencies": { + "cliui": "^8.0.1", + "escalade": "^3.1.1", + "get-caller-file": "^2.0.5", + "require-directory": "^2.1.1", + "string-width": "^4.2.3", + "y18n": "^5.0.5", + "yargs-parser": "^21.1.1" + }, + "engines": { + "node": ">=12" + } + }, "node_modules/yargs-parser": { "version": "20.2.9", "dev": true, @@ -12609,6 +12982,15 @@ "node": ">=10" } }, + "node_modules/yargs/node_modules/yargs-parser": { + "version": "21.1.1", + "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz", + "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==", + "dev": true, + "engines": { + "node": ">=12" + } + }, "node_modules/yauzl": { "version": "2.10.0", "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz", @@ -12630,6 +13012,18 @@ "url": "https://github.com/sponsors/sindresorhus" } }, + "node_modules/yoctocolors-cjs": { + "version": "2.1.2", + "resolved": "https://registry.npmjs.org/yoctocolors-cjs/-/yoctocolors-cjs-2.1.2.tgz", + "integrity": "sha512-cYVsTjKl8b+FrnidjibDWskAv7UKOfcwaVZdp/it9n1s9fU3IkgDbhdIRKCW4JDsAlECJY0ytoVPT3sK6kideA==", + "dev": true, + "engines": { + "node": ">=18" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } + }, "node_modules/yup": { "version": "1.1.1", "license": "MIT", diff --git a/package.json b/package.json index ce0611bb6..4a6fdae0f 100644 --- a/package.json +++ b/package.json @@ -150,6 +150,7 @@ "jsdoc": "^4.0.2", "jsdom": "^22.1.0", "jss": "^10.10.0", + "msw": "^2.3.1", "node-gyp": "^9.3.1", "type-fest": "^4.20.0" } From d65d0a4b094a9d47b33f9cea7236c09637519bb0 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 11:26:57 +1000 Subject: [PATCH 33/43] use new metadata getter in components Signed-off-by: Steve Cassidy --- src/gui/components/metadataRenderer.tsx | 4 +- .../notebook/add_record_by_type.tsx | 6 +- src/gui/fields/selectadvanced.tsx | 6 +- src/projectMetadata.test.ts | 82 ------------------- 4 files changed, 8 insertions(+), 90 deletions(-) delete mode 100644 src/projectMetadata.test.ts diff --git a/src/gui/components/metadataRenderer.tsx b/src/gui/components/metadataRenderer.tsx index e24dbc7ed..f7f90a959 100644 --- a/src/gui/components/metadataRenderer.tsx +++ b/src/gui/components/metadataRenderer.tsx @@ -21,11 +21,11 @@ import React from 'react'; import {CircularProgress, Chip} from '@mui/material'; -import {getProjectMetadata} from '../../projectMetadata'; import {ProjectID} from 'faims3-datamodel'; import {listenProjectDB} from '../../sync/projects'; import {useEventedPromise, constantArgsSplit} from '../pouchHook'; import {DEBUG_APP} from '../../buildconfig'; +import {getMetadataValue} from '../../sync/metadata'; type MetadataProps = { project_id: ProjectID; @@ -43,7 +43,7 @@ export default function MetadataRenderer(props: MetadataProps) { 'MetadataRenderer component', async (project_id: ProjectID, metadata_key: string) => { try { - return await getProjectMetadata(project_id, metadata_key); + return await getMetadataValue(project_id, metadata_key); } catch (err) { console.warn( 'Failed to get project metadata with key', diff --git a/src/gui/components/notebook/add_record_by_type.tsx b/src/gui/components/notebook/add_record_by_type.tsx index 95b7f8fe6..5b210c990 100644 --- a/src/gui/components/notebook/add_record_by_type.tsx +++ b/src/gui/components/notebook/add_record_by_type.tsx @@ -9,7 +9,7 @@ import AddIcon from '@mui/icons-material/Add'; import * as ROUTES from '../../../constants/routes'; import {getUiSpecForProject} from '../../../uiSpecification'; -import { listenProjectDB } from '../../../sync/projects'; +import {listenProjectDB} from '../../../sync/projects'; import {useEventedPromise, constantArgsSplit} from '../../pouchHook'; import {QRCodeButton} from '../../fields/qrcode/QRCodeFormField'; import { @@ -17,8 +17,8 @@ import { getRecordsWithRegex, RecordMetadata, } from 'faims3-datamodel'; -import {getProjectMetadata} from '../../../projectMetadata'; import {logError} from '../../../logging'; +import {getMetadataValue} from '../../../sync/metadata'; type AddRecordButtonsProps = { project: ProjectInformation; @@ -33,7 +33,7 @@ export default function AddRecordButtons(props: AddRecordButtonsProps) { const [showQRButton, setShowQRButton] = useState(false); - getProjectMetadata(project_id, 'showQRCodeButton').then(value => { + getMetadataValue(project_id, 'showQRCodeButton').then(value => { setShowQRButton(value === true || value === 'true'); }); diff --git a/src/gui/fields/selectadvanced.tsx b/src/gui/fields/selectadvanced.tsx index 3e48dbd16..1644d5e59 100644 --- a/src/gui/fields/selectadvanced.tsx +++ b/src/gui/fields/selectadvanced.tsx @@ -29,8 +29,8 @@ import Typography from '@mui/material/Typography'; import Chip from '@mui/material/Chip'; import Paper from '@mui/material/Paper'; import {createTheme, styled} from '@mui/material/styles'; -import {getProjectMetadata} from '../../projectMetadata'; import {logError} from '../../logging'; +import {getMetadataValue} from '../../sync/metadata'; interface RenderTree { // id: string; name: string; @@ -243,14 +243,14 @@ export function AdvancedSelect(props: TextFieldProps & Props) { (async () => { if (project_id !== undefined && mounted) { try { - const attachfilenames = await getProjectMetadata( + const attachfilenames = await getMetadataValue( project_id, 'attachfilenames' ); const attachments: {[key: string]: File} = {}; for (const index in attachfilenames) { const key = attachfilenames[index]; - const file = await getProjectMetadata(project_id, key); + const file = await getMetadataValue(project_id, key); attachments[key] = file[0]; } setIsactive(true); diff --git a/src/projectMetadata.test.ts b/src/projectMetadata.test.ts deleted file mode 100644 index fbbdef626..000000000 --- a/src/projectMetadata.test.ts +++ /dev/null @@ -1,82 +0,0 @@ -/* eslint-disable node/no-unpublished-import */ -/* - * Copyright 2021, 2022 Macquarie University - * - * Licensed under the Apache License Version 2.0 (the, "License"); - * you may not use, this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing software - * distributed under the License is distributed on an "AS IS" BASIS - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND either express or implied. - * See, the License, for the specific language governing permissions and - * limitations under the License. - * - * Filename: projectMetadata.test.js - * Description: - * TODO - */ - -import {test, fc} from '@fast-check/vitest'; -import {describe, vi, expect} from 'vitest'; -import PouchDB from 'pouchdb-browser'; -import {getProjectMetadata, setProjectMetadata} from './projectMetadata'; -import {ProjectID} from 'faims3-datamodel'; -import {equals} from './utils/eqTestSupport'; - -const projdbs: any = {}; - -async function mockProjectDB(project_id: ProjectID) { - if (projdbs[project_id] === undefined) { - const db = new PouchDB(project_id, {adapter: 'memory'}); - projdbs[project_id] = db; - } - return projdbs[project_id]; -} - -// async function cleanProjectDBS() { -// let db; -// for (const project_id in projdbs) { -// db = projdbs[project_id]; -// delete projdbs[project_id]; - -// if (db !== undefined) { -// try { -// await db.destroy(); -// //await db.close(); -// } catch (err) { -// console.error(err); -// } -// } -// } -// } - -vi.mock('./sync/index', () => ({ - getProjectDB: mockProjectDB, -})); - -describe('roundtrip reading and writing to db', () => { - const project_id = 'test_project_id'; - test.prop([ - fc.fullUnicodeString({minLength: 1}), // metadata_key - fc.unicodeJsonValue(), // unicodeJsonObject(), // metadata - ])('metadata roundtrip', (metadata_key: string, metadata: any) => { - // try { - // await cleanProjectDBS(); - // } catch (err) { - // console.error(err); - // fail('Failed to clean dbs'); - // } - fc.pre(projdbs.length !== 0); - - return setProjectMetadata(project_id, metadata_key, metadata) - .then(_result => { - return getProjectMetadata(project_id, metadata_key); - }) - .then(result => { - expect(equals(result, metadata)).toBe(true); - }); - }); -}); From 5e2bc3f811c6a015b3e69953a24f1a6aded20836 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 11:28:34 +1000 Subject: [PATCH 34/43] fix up autoincrementers for new metadata store Signed-off-by: Steve Cassidy --- src/local-data/autoincrement.ts | 155 ++++++++++++++------------------ 1 file changed, 68 insertions(+), 87 deletions(-) diff --git a/src/local-data/autoincrement.ts b/src/local-data/autoincrement.ts index 04648e44e..fbd32fc15 100644 --- a/src/local-data/autoincrement.ts +++ b/src/local-data/autoincrement.ts @@ -15,7 +15,7 @@ * * Filename: autoincrement.ts * Description: - * TODO + * Manage autoincrementer state for a project */ // There are two internal IDs for projects, the former is unique to the system @@ -23,19 +23,18 @@ // database it came from, for a FAIMS listing // (It is this way because the list of projects is decentralised and so we // cannot enforce system-wide unique project IDs without a 'namespace' listing id) -import {getProjectDB} from '../sync'; + import {getLocalStateDB} from '../sync/databases'; import { ProjectID, LocalAutoIncrementRange, LocalAutoIncrementState, AutoIncrementReference, - AutoIncrementReferenceDoc, } from 'faims3-datamodel'; import {logError} from '../logging'; +import {getUiSpecForProject} from '../uiSpecification'; const LOCAL_AUTOINCREMENT_PREFIX = 'local-autoincrement-state'; -const LOCAL_AUTOINCREMENT_NAME = 'local-autoincrementers'; export interface UserFriendlyAutoincrementStatus { label: string; @@ -43,6 +42,14 @@ export interface UserFriendlyAutoincrementStatus { end: number | null; } +/** + * Generate a name to use to store autoincrementer state for this field + * + * @param project_id project identifier + * @param form_id form identifier + * @param field_id field identifier + * @returns a name for the pouchdb document + */ function get_pouch_id( project_id: ProjectID, form_id: string, @@ -59,6 +66,13 @@ function get_pouch_id( ); } +/** + * Get the current state of the autoincrementer for this field + * @param project_id project identifier + * @param form_id form identifier + * @param field_id field identifier + * @returns current state from the database + */ export async function getLocalAutoincrementStateForField( project_id: ProjectID, form_id: string, @@ -85,6 +99,11 @@ export async function getLocalAutoincrementStateForField( } } +/** + * Store a new state document for an autoincrementer + * + * @param new_state A state document with updated settings + */ export async function setLocalAutoincrementStateForField( new_state: LocalAutoIncrementState ) { @@ -98,6 +117,13 @@ export async function setLocalAutoincrementStateForField( } } +/** + * Create a new autoincrementer range document but do not store it + * @param start Start of range + * @param stop End of range + * @returns The auto incrementer range document + * + */ export function createNewAutoincrementRange( start: number, stop: number @@ -111,6 +137,14 @@ export function createNewAutoincrementRange( return doc; } +/** + * Get the range information for a field + * + * @param project_id project identifier + * @param form_id form identifier + * @param field_id field identifier + * @returns the current range document for this field + */ export async function getLocalAutoincrementRangesForField( project_id: ProjectID, form_id: string, @@ -124,6 +158,16 @@ export async function getLocalAutoincrementRangesForField( return state.ranges; } +/** + * Set the range information for a field + * + * @param project_id project identifier + * @param form_id form identifier + * @param field_id field identifier + * @throws an error if the range has been removed + * @throws an error if the range start has changed + * @throws an error if the range stop is less than the last used value + */ export async function setLocalAutoincrementRangesForField( project_id: ProjectID, form_id: string, @@ -163,97 +207,34 @@ export async function setLocalAutoincrementRangesForField( } } +/** + * Derive an autoincrementers object from a UI Spec + * find all of the autoincrement fields in the UISpec and create an + * entry for each of them. + * @param project_id the project identifier + * @returns an autoincrementers object suitable for insertion into the db or + * undefined if there are no such fields + */ export async function getAutoincrementReferencesForProject( project_id: ProjectID -): Promise { - const projdb = await getProjectDB(project_id); - try { - const doc: AutoIncrementReferenceDoc = await projdb.get( - LOCAL_AUTOINCREMENT_NAME - ); - return doc.references; - } catch (err: any) { - if (err.status === 404) { - // No autoincrementers - return []; - } - logError(err); - throw Error( - `Unable to get local autoincrement references for ${project_id}` - ); - } -} - -export async function addAutoincrementReferenceForProject( - project_id: ProjectID, - form_id: string[], - field_id: string[], - label: string[] ) { - const projdb = await getProjectDB(project_id); - const refs: Array = []; - form_id.map((id: string, index: number) => - refs.push({ - form_id: id, - field_id: field_id[index], - label: label[index], - }) - ); - const refs_add: Array = []; - try { - const doc: AutoIncrementReferenceDoc = await projdb.get( - LOCAL_AUTOINCREMENT_NAME - ); - refs.map((ref: AutoIncrementReference) => { - let found = false; - for (const existing_ref of doc.references) { - if (ref.toString() === existing_ref.toString()) { - found = true; - } - } - if (!found) { - refs_add.push(ref); - } - }); - doc.references = refs; + const uiSpec = await getUiSpecForProject(project_id); - await projdb.put(doc); - } catch (err: any) { - if (err.status === 404) { - // No autoincrementers currently - await projdb.put({ - _id: LOCAL_AUTOINCREMENT_NAME, - references: refs, + const references: AutoIncrementReference[] = []; + + const fields = uiSpec.fields as ProjectUIFields; + for (const field in fields) { + // TODO are there other names? + if (fields[field]['component-name'] === 'BasicAutoIncrementer') { + references.push({ + form_id: fields[field]['component-parameters'].form_id, + field_id: fields[field]['component-parameters'].name, + label: fields[field]['component-parameters'].label, }); - } else { - logError(err); // Unable to add local autoincrement reference } } -} -export async function removeAutoincrementReferenceForProject( - project_id: ProjectID, - form_id: string, - field_id: string, - label: string -) { - const projdb = await getProjectDB(project_id); - const ref: AutoIncrementReference = { - form_id: form_id, - field_id: field_id, - label: label, - }; - try { - const doc: AutoIncrementReferenceDoc = await projdb.get( - LOCAL_AUTOINCREMENT_NAME - ); - const ref_set = new Set(doc.references); - ref_set.delete(ref); - doc.references = Array.from(ref_set.values()); - await projdb.put(doc); - } catch (err) { - logError(err); // Unable to remove local autoincrement reference - } + return references; } async function getDisplayStatusForField( From 550e33e80b0a7d781ed5aa8d3e41ad70e847f520 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 12:04:12 +1000 Subject: [PATCH 35/43] useEffect rather than useEventedPromise for metadata access Signed-off-by: Steve Cassidy --- src/gui/components/metadataRenderer.tsx | 54 +++++++------------------ 1 file changed, 14 insertions(+), 40 deletions(-) diff --git a/src/gui/components/metadataRenderer.tsx b/src/gui/components/metadataRenderer.tsx index f7f90a959..a86f98a2b 100644 --- a/src/gui/components/metadataRenderer.tsx +++ b/src/gui/components/metadataRenderer.tsx @@ -18,12 +18,9 @@ * TODO */ -import React from 'react'; -import {CircularProgress, Chip} from '@mui/material'; - +import React, {useEffect, useState} from 'react'; +import {Chip} from '@mui/material'; import {ProjectID} from 'faims3-datamodel'; -import {listenProjectDB} from '../../sync/projects'; -import {useEventedPromise, constantArgsSplit} from '../pouchHook'; import {DEBUG_APP} from '../../buildconfig'; import {getMetadataValue} from '../../sync/metadata'; @@ -39,37 +36,20 @@ export default function MetadataRenderer(props: MetadataProps) { const chips = props.chips ?? true; const metadata_key = props.metadata_key; const metadata_label = props.metadata_label; - const metadata_value = useEventedPromise( - 'MetadataRenderer component', - async (project_id: ProjectID, metadata_key: string) => { - try { - return await getMetadataValue(project_id, metadata_key); - } catch (err) { - console.warn( - 'Failed to get project metadata with key', - project_id, - metadata_key, - err - ); - return ''; - } - }, - constantArgsSplit( - listenProjectDB, - [project_id, {since: 'now', live: true}], - [project_id, metadata_key] - ), - true, - [project_id, metadata_key], - project_id, - metadata_key - ); + const [value, setValue] = useState(''); + + useEffect(() => { + getMetadataValue(project_id, metadata_key).then(v => { + setValue(v as string); + }); + }); + if (DEBUG_APP) { console.debug('metadata_label', metadata_label); - console.debug('metadata_value', metadata_value); + console.debug('metadata_value', value); } - return chips && metadata_value.value !== '' ? ( + return chips && value !== '' ? ( )} - {metadata_value.value && {metadata_value.value}} - {metadata_value.loading && ( - - )} + {value} } /> ) : ( - <> - {metadata_value.value && {metadata_value.value}} - {metadata_value.loading && } - + {value} ); } From 092b7ab31ce9a873040e2c347ad68e1b8df0846b Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 12:04:51 +1000 Subject: [PATCH 36/43] Get the project description from the metadata Signed-off-by: Steve Cassidy --- src/gui/components/notebook/index.tsx | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/src/gui/components/notebook/index.tsx b/src/gui/components/notebook/index.tsx index a88b84512..b7ce34440 100644 --- a/src/gui/components/notebook/index.tsx +++ b/src/gui/components/notebook/index.tsx @@ -237,7 +237,11 @@ export default function NotebookComponent(props: NotebookComponentProps) { Description - {project.description} + From 3093c33ff88e082c805334c8cc5b27f18d1375b8 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 12:05:28 +1000 Subject: [PATCH 37/43] get types right for metadata - still stuff to do on attachments Signed-off-by: Steve Cassidy --- src/gui/fields/selectadvanced.tsx | 10 ++++++---- src/local-data/autoincrement.ts | 4 ++-- 2 files changed, 8 insertions(+), 6 deletions(-) diff --git a/src/gui/fields/selectadvanced.tsx b/src/gui/fields/selectadvanced.tsx index 1644d5e59..0ce0e7426 100644 --- a/src/gui/fields/selectadvanced.tsx +++ b/src/gui/fields/selectadvanced.tsx @@ -243,15 +243,17 @@ export function AdvancedSelect(props: TextFieldProps & Props) { (async () => { if (project_id !== undefined && mounted) { try { - const attachfilenames = await getMetadataValue( + const attachfilenames = (await getMetadataValue( project_id, 'attachfilenames' - ); + )) as string[]; const attachments: {[key: string]: File} = {}; for (const index in attachfilenames) { const key = attachfilenames[index]; - const file = await getMetadataValue(project_id, key); - attachments[key] = file[0]; + // TODO this almost certainly won't work, need to fix up + // metadata attachments + const file = (await getMetadataValue(project_id, key)) as File; + attachments[key] = file; } setIsactive(true); SetAttachments(attachments); diff --git a/src/local-data/autoincrement.ts b/src/local-data/autoincrement.ts index fbd32fc15..0571f7ea7 100644 --- a/src/local-data/autoincrement.ts +++ b/src/local-data/autoincrement.ts @@ -30,6 +30,7 @@ import { LocalAutoIncrementRange, LocalAutoIncrementState, AutoIncrementReference, + ProjectUIFields, } from 'faims3-datamodel'; import {logError} from '../logging'; import {getUiSpecForProject} from '../uiSpecification'; @@ -101,7 +102,7 @@ export async function getLocalAutoincrementStateForField( /** * Store a new state document for an autoincrementer - * + * * @param new_state A state document with updated settings */ export async function setLocalAutoincrementStateForField( @@ -122,7 +123,6 @@ export async function setLocalAutoincrementStateForField( * @param start Start of range * @param stop End of range * @returns The auto incrementer range document - * */ export function createNewAutoincrementRange( start: number, From 5fc12c3ff7192d59e9ac4e2b45471c84207601fe Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 12:19:37 +1000 Subject: [PATCH 38/43] Remove unused 'metasections' attributes Signed-off-by: Steve Cassidy --- src/gui/components/record/form.test.tsx | 13 ------------- src/gui/pages/record-create.tsx | 18 +++--------------- src/gui/pages/record.tsx | 11 +---------- 3 files changed, 4 insertions(+), 38 deletions(-) diff --git a/src/gui/components/record/form.test.tsx b/src/gui/components/record/form.test.tsx index d0e84391f..bf8916673 100644 --- a/src/gui/components/record/form.test.tsx +++ b/src/gui/components/record/form.test.tsx @@ -43,13 +43,6 @@ const testTypeName = 'SurveyAreaForm'; const testDraftId = 'drf-150611c6-f161-4bd3-8733-8fb0e7627313'; -const testMetaSection = { - SurveyAreaFormSECTION1: { - sectiondescriptionSurveyAreaFormSECTION1: - 'Here you will describe the survey session.', - }, -}; - const testDraftLastSaved = 'Thu Jun 29 2023 20:07:13 GMT+0300 (Eastern European Summer Time)'; @@ -1331,7 +1324,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} @@ -1408,7 +1400,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} @@ -1449,7 +1440,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} @@ -1487,7 +1477,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} @@ -1528,7 +1517,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} @@ -1572,7 +1560,6 @@ describe('Check form component', () => { record_id={testRecordId} type={testTypeName} draft_id={testDraftId} - metaSection={testMetaSection} handleSetIsDraftSaving={vi.fn(() => {})} handleSetDraftLastSaved={vi.fn(() => {})} handleSetDraftError={vi.fn(() => {})} diff --git a/src/gui/pages/record-create.tsx b/src/gui/pages/record-create.tsx index e525b3426..adb9c5d73 100644 --- a/src/gui/pages/record-create.tsx +++ b/src/gui/pages/record-create.tsx @@ -43,14 +43,10 @@ import TabContext from '@mui/lab/TabContext'; import TabList from '@mui/lab/TabList'; import TabPanel from '@mui/lab/TabPanel'; import {generateFAIMSDataID} from 'faims3-datamodel'; -import { listenProjectInfo } from '../../sync/projects'; -import { getProjectInfo } from '../../sync/projects'; +import {listenProjectInfo} from '../../sync/projects'; +import {getProjectInfo} from '../../sync/projects'; import {ProjectID, RecordID} from 'faims3-datamodel'; -import { - ProjectUIModel, - ProjectInformation, - SectionMeta, -} from 'faims3-datamodel'; +import {ProjectUIModel, ProjectInformation} from 'faims3-datamodel'; import { getUiSpecForProject, getReturnedTypesForViewSet, @@ -60,7 +56,6 @@ import {newStagedData} from '../../sync/draft-storage'; import Breadcrumbs from '../components/ui/breadcrumbs'; import RecordForm from '../components/record/form'; import {useEventedPromise, constantArgsShared} from '../pouchHook'; -import {getProjectMetadata} from '../../projectMetadata'; import UnpublishedWarning from '../components/record/unpublished_warning'; import DraftSyncStatus from '../components/record/sync_status'; import {grey} from '@mui/material/colors'; @@ -171,7 +166,6 @@ function DraftEdit(props: DraftEditProps) { const [draftLastSaved, setDraftLastSaved] = useState(null as Date | null); const [draftError, setDraftError] = useState(null as string | null); - const [metaSection, setMetaSection] = useState(null as null | SectionMeta); const [value, setValue] = React.useState('1'); const theme = useTheme(); const is_mobile = !useMediaQuery(theme.breakpoints.up('sm')); @@ -181,11 +175,6 @@ function DraftEdit(props: DraftEditProps) { useEffect(() => { getUiSpecForProject(project_id).then(setUISpec, setError); - if (project_id !== null) { - getProjectMetadata(project_id, 'sections').then(res => - setMetaSection(res) - ); - } }, [project_id]); useEffect(() => { @@ -308,7 +297,6 @@ function DraftEdit(props: DraftEditProps) { type={type_name} ui_specification={uiSpec} draft_id={draft_id} - metaSection={metaSection} handleSetIsDraftSaving={setIsDraftSaving} handleSetDraftLastSaved={setDraftLastSaved} handleSetDraftError={setDraftError} diff --git a/src/gui/pages/record.tsx b/src/gui/pages/record.tsx index b98c7df5e..42355de5c 100644 --- a/src/gui/pages/record.tsx +++ b/src/gui/pages/record.tsx @@ -38,7 +38,7 @@ import TabPanel from '@mui/lab/TabPanel'; import {ActionType} from '../../context/actions'; import * as ROUTES from '../../constants/routes'; -import { listenProjectInfo } from '../../sync/projects'; +import {listenProjectInfo} from '../../sync/projects'; import {getProjectInfo} from '../../sync/projects'; import { ProjectID, @@ -47,7 +47,6 @@ import { RevisionID, ProjectUIModel, ProjectInformation, - SectionMeta, listFAIMSRecordRevisions, getFullRecordData, getHRIDforRecordID, @@ -63,7 +62,6 @@ import RecordMeta from '../components/record/meta'; import BoxTab from '../components/ui/boxTab'; import Breadcrumbs from '../components/ui/breadcrumbs'; import {useEventedPromise, constantArgsShared} from '../pouchHook'; -import {getProjectMetadata} from '../../projectMetadata'; import {isSyncingProjectAttachments} from '../../sync/sync-toggle'; import {} from 'faims3-datamodel'; @@ -140,7 +138,6 @@ export default function Record() { const [isDraftSaving, setIsDraftSaving] = useState(false); const [draftLastSaved, setDraftLastSaved] = useState(null as Date | null); const [draftError, setDraftError] = useState(null as string | null); - const [metaSection, setMetaSection] = useState(null as null | SectionMeta); const [type, setType] = useState(null as null | string); const [hrid, setHrid] = useState(null as null | string); const [isSyncing, setIsSyncing] = useState(null); // this is to check if the project attachment sync @@ -167,9 +164,6 @@ export default function Record() { useEffect(() => { getUiSpecForProject(project_id!).then(setUISpec, setError); if (project_id !== null) { - getProjectMetadata(project_id!, 'sections') - .then(res => setMetaSection(res)) - .catch(logError); try { setIsSyncing(isSyncingProjectAttachments(project_id!)); } catch (error) { @@ -663,7 +657,6 @@ export default function Record() { revision_id={updatedrevision_id!} ui_specification={uiSpec} draft_id={draft_id} - metaSection={metaSection} conflictfields={conflictfields} handleChangeTab={handleChange} isSyncing={isSyncing.toString()} @@ -692,7 +685,6 @@ export default function Record() { revision_id={updatedrevision_id!} ui_specification={uiSpec} draft_id={draft_id} - metaSection={metaSection} conflictfields={conflictfields} handleChangeTab={handleChange} isDraftSaving={isDraftSaving} @@ -776,7 +768,6 @@ export default function Record() { record_id={record_id!} revision_id={updatedrevision_id} ui_specification={uiSpec} - metaSection={metaSection} type={type} conflicts={conflicts} setissavedconflict={setissavedconflict} From 8a56f39e248f66dd4ac18da5982879c86d4c7163 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 12:25:37 +1000 Subject: [PATCH 39/43] more metaSection removal and remove debug output Signed-off-by: Steve Cassidy --- src/gui/components/record/RecordData.tsx | 3 --- .../components/record/conflict/conflictform.tsx | 1 - src/gui/components/record/form.tsx | 12 +----------- src/gui/components/record/read_view.tsx | 2 -- src/sync/index.ts | 6 ------ src/sync/metadata.test.ts | 3 --- src/sync/metadata.ts | 5 ++--- src/sync/projects.ts | 15 --------------- 8 files changed, 3 insertions(+), 44 deletions(-) diff --git a/src/gui/components/record/RecordData.tsx b/src/gui/components/record/RecordData.tsx index 7f5fdde3c..c831cb7c9 100644 --- a/src/gui/components/record/RecordData.tsx +++ b/src/gui/components/record/RecordData.tsx @@ -48,7 +48,6 @@ interface RecordDataTypes { ui_specification: ProjectUIModel; conflictfields?: string[] | null; handleChangeTab: Function; - metaSection?: any; isSyncing?: string; disabled?: boolean; isDraftSaving: boolean; @@ -137,7 +136,6 @@ export default function RecordData(props: RecordDataTypes) { revision_id={props.revision_id} ui_specification={props.ui_specification} draft_id={props.draft_id} - metaSection={props.metaSection} handleChangeTab={props.handleChangeTab} conflictfields={props.conflictfields} isSyncing={props.isSyncing} @@ -201,7 +199,6 @@ export default function RecordData(props: RecordDataTypes) { revision_id={props.revision_id} ui_specification={props.ui_specification} draft_id={props.draft_id} - metaSection={props.metaSection} disabled={true} // for view of the forms handleSetIsDraftSaving={props.handleSetIsDraftSaving} handleSetDraftLastSaved={props.handleSetDraftLastSaved} diff --git a/src/gui/components/record/conflict/conflictform.tsx b/src/gui/components/record/conflict/conflictform.tsx index 50ad47a4b..f4f0eaaee 100644 --- a/src/gui/components/record/conflict/conflictform.tsx +++ b/src/gui/components/record/conflict/conflictform.tsx @@ -66,7 +66,6 @@ type ConflictFormProps = { record_id: RecordID; view_default?: string; ui_specification: ProjectUIModel; - metaSection?: any; revision_id?: null | RevisionID; type: string; conflicts: InitialMergeDetails; diff --git a/src/gui/components/record/form.tsx b/src/gui/components/record/form.tsx index 5e16d7920..fd990e658 100644 --- a/src/gui/components/record/form.tsx +++ b/src/gui/components/record/form.tsx @@ -82,7 +82,6 @@ type RecordFormProps = { ui_specification: ProjectUIModel; conflictfields?: string[] | null; handleChangeTab?: Function; - metaSection?: any; isSyncing?: string; disabled?: boolean; handleSetIsDraftSaving: Function; @@ -702,7 +701,7 @@ class RecordForm extends React.Component< } requireDescription(viewName: string) { - if (viewName === null || this.props.metaSection === null) { + if (viewName === null) { console.warn('The description has not been determined yet'); return ''; } @@ -715,15 +714,6 @@ class RecordForm extends React.Component< return this.props.ui_specification.views[viewName].description; } - // backwards compatibility - look in the metadata section - if ( - viewName !== null && - this.props.metaSection !== undefined && - this.props.metaSection[viewName] !== undefined && - this.props.metaSection[viewName]['sectiondescription' + viewName] !== - undefined - ) - return this.props.metaSection[viewName]['sectiondescription' + viewName]; return ''; } diff --git a/src/gui/components/record/read_view.tsx b/src/gui/components/record/read_view.tsx index a1a7d5cb8..a3ee1952d 100644 --- a/src/gui/components/record/read_view.tsx +++ b/src/gui/components/record/read_view.tsx @@ -34,7 +34,6 @@ interface RecordReadViewProps { ui_specification: ProjectUIModel; conflictfields?: string[] | null; handleChangeTab?: any; - metaSection?: any; draft_id?: string; handleSetIsDraftSaving: Function; handleSetDraftLastSaved: Function; @@ -66,7 +65,6 @@ export default function RecordReadView(props: RecordReadViewProps) { revision_id={props.revision_id} ui_specification={props.ui_specification} draft_id={props.draft_id} - metaSection={props.metaSection} disabled={true} handleSetIsDraftSaving={props.handleSetIsDraftSaving} handleSetDraftLastSaved={props.handleSetDraftLastSaved} diff --git a/src/sync/index.ts b/src/sync/index.ts index 6a222fb98..3fa0b0506 100644 --- a/src/sync/index.ts +++ b/src/sync/index.ts @@ -116,12 +116,6 @@ export async function getProjectDB( if (active_id in metadata_dbs) { return metadata_dbs[active_id].local; } else { - console.log( - '%cgetProjectDB', - 'background-color: green', - active_id, - metadata_dbs - ); throw `Meta DB of project ${active_id} is not known`; } } diff --git a/src/sync/metadata.test.ts b/src/sync/metadata.test.ts index 0ad0cc20d..bc62d40f6 100644 --- a/src/sync/metadata.test.ts +++ b/src/sync/metadata.test.ts @@ -50,9 +50,6 @@ const restHandlers = [ const server = setupServer(...restHandlers); -server.events.on('request:start', ({request}) => { - console.log('MSW intercepted:', request.method, request.url); -}); // Start server before all tests beforeAll(() => server.listen()); diff --git a/src/sync/metadata.ts b/src/sync/metadata.ts index 7ae0f56a6..11100223c 100644 --- a/src/sync/metadata.ts +++ b/src/sync/metadata.ts @@ -81,8 +81,6 @@ export const fetchProjectMetadata = async ( // nop } - console.log('inserting documents'); - try { // insert the two documents metaDB.put({ @@ -95,7 +93,8 @@ export const fetchProjectMetadata = async ( _id: 'ui-specification', }); } catch { - console.log('something went wrong'); + // what should we do here? + console.log('something went wrong inserting metadata documents to pouchdb'); } }; diff --git a/src/sync/projects.ts b/src/sync/projects.ts index 482780e00..d2bb26ba7 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -166,13 +166,11 @@ export async function getAvailableProjectsFromListing( const output: ProjectInformation[] = []; const projects: ProjectObject[] = []; const listing = getListing(listing_id); - console.log('listing', listing_id, listing); if (listing) { const projects_db = listing.projects.local; const res = await projects_db.allDocs({ include_docs: true, }); - console.log('got project documents', res); res.rows.forEach(e => { if (e.doc !== undefined && !e.id.startsWith('_')) { projects.push(e.doc as ProjectObject); @@ -223,7 +221,6 @@ export function delete_project( active_doc: ExistingActiveDoc, project_object: ProjectObject ) { - console.log('Deleting project', active_doc, project_object); // Delete project from memory const project_id = active_doc.project_id; @@ -284,14 +281,6 @@ export async function ensure_project_databases( true ); - console.log( - '%cmeta database', - 'background-color: pink', - meta_did_change, - meta_local, - metadata_dbs - ); - const [data_did_change, data_local] = ensure_local_db( 'data', active_id, @@ -329,8 +318,6 @@ export async function ensure_project_databases( events.emit('data_sync_state', false, active_doc, project_object); }; - console.log('going to get project metadata'); - // get project metadata and UiSpec and store them in the db const listing = getListing(active_doc.listing_id); await fetchProjectMetadata(listing, active_doc.project_id); @@ -356,8 +343,6 @@ export async function ensure_project_databases( ...project_object.data_db, }; - console.log('update_project data connection', data_connection_info); - // set up remote sync for data database const [, data_remote] = ensure_synced_db( active_id, From 3298f4d022dbb112dadef6271b621a3f8455211b Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 16:59:20 +1000 Subject: [PATCH 40/43] Replace more uses of useEventedPromise with useEffect Signed-off-by: Steve Cassidy --- src/gui/components/metadataRenderer.tsx | 6 --- .../notebook/add_record_by_type.tsx | 40 ++++++------------- .../components/notebook/settings/index.tsx | 38 ++++++------------ src/gui/layout/appBar.tsx | 21 ++++------ src/gui/pages/record-create.test.tsx | 2 +- src/gui/pages/record-create.tsx | 32 +++++---------- src/gui/pages/record.tsx | 34 +++++----------- 7 files changed, 54 insertions(+), 119 deletions(-) diff --git a/src/gui/components/metadataRenderer.tsx b/src/gui/components/metadataRenderer.tsx index a86f98a2b..2a1b849c3 100644 --- a/src/gui/components/metadataRenderer.tsx +++ b/src/gui/components/metadataRenderer.tsx @@ -21,7 +21,6 @@ import React, {useEffect, useState} from 'react'; import {Chip} from '@mui/material'; import {ProjectID} from 'faims3-datamodel'; -import {DEBUG_APP} from '../../buildconfig'; import {getMetadataValue} from '../../sync/metadata'; type MetadataProps = { @@ -44,11 +43,6 @@ export default function MetadataRenderer(props: MetadataProps) { }); }); - if (DEBUG_APP) { - console.debug('metadata_label', metadata_label); - console.debug('metadata_value', value); - } - return chips && value !== '' ? ( (undefined); const [showQRButton, setShowQRButton] = useState(false); - - getMetadataValue(project_id, 'showQRCodeButton').then(value => { - setShowQRButton(value === true || value === 'true'); - }); - const [selectedRecord, setSelectedRecord] = useState< RecordMetadata | undefined >(undefined); - const ui_spec = useEventedPromise( - 'AddRecordButtons component', - getUiSpecForProject, - constantArgsSplit( - listenProjectDB, - [project_id, {since: 'now', live: true}], - [project_id] - ), - true, - [project_id], - project_id - ); + getMetadataValue(project_id, 'showQRCodeButton').then(value => { + setShowQRButton(value === true || value === 'true'); + }); - if (ui_spec.error) { - logError(ui_spec.error); - } + useEffect(() => { + getUiSpecForProject(project_id).then(u => setUiSpec(u)); + }); - if (ui_spec.loading || ui_spec.value === undefined) { + if (uiSpec === undefined) { return ; } - const viewsets = ui_spec.value.viewsets; - const visible_types = ui_spec.value.visible_types; + const viewsets = uiSpec.viewsets; + const visible_types = uiSpec.visible_types; const handleScanResult = (value: string) => { // find a record with this field value diff --git a/src/gui/components/notebook/settings/index.tsx b/src/gui/components/notebook/settings/index.tsx index 0d3d02e6c..17883f53b 100644 --- a/src/gui/components/notebook/settings/index.tsx +++ b/src/gui/components/notebook/settings/index.tsx @@ -15,11 +15,11 @@ * * Filename: settings.tsx * Description: - * TODO + * The settings component for a notebook presents user changeable options */ import React, {useContext, useEffect, useState} from 'react'; -import {useParams, Navigate} from 'react-router-dom'; +import {useParams} from 'react-router-dom'; import { Box, @@ -31,9 +31,7 @@ import { Switch, } from '@mui/material'; -import {listenProjectInfo} from '../../../../sync/projects'; import {getProjectInfo} from '../../../../sync/projects'; -import {useEventedPromise, constantArgsShared} from '../../../pouchHook'; import {ProjectInformation} from 'faims3-datamodel'; import {ProjectID} from 'faims3-datamodel'; import { @@ -65,25 +63,15 @@ export default function NotebookSettings(props: {uiSpec: ProjectUIModel}) { return listenSyncingProjectAttachments(project_id!, setIsSyncing); }, [project_id]); - let project_info: ProjectInformation | null; - try { - project_info = useEventedPromise( - 'NotebookSettings component project info', - getProjectInfo, - constantArgsShared(listenProjectInfo, project_id!), - false, - [project_id], - project_id! - ).expect(); - } catch (err: any) { - if (err.message === 'missing') { - return ; - } else { - throw err; - } - } + const [projectInfo, setProjectInfo] = useState( + null + ); + useEffect(() => { + if (project_id) + getProjectInfo(project_id).then(info => setProjectInfo(info)); + }, [project_id]); - return project_info ? ( + return projectInfo ? ( @@ -155,7 +143,7 @@ export default function NotebookSettings(props: {uiSpec: ProjectUIModel}) { diff --git a/src/gui/layout/appBar.tsx b/src/gui/layout/appBar.tsx index 79ad31392..5d322b5a2 100644 --- a/src/gui/layout/appBar.tsx +++ b/src/gui/layout/appBar.tsx @@ -19,7 +19,7 @@ * throughout the app. */ -import React, {useState} from 'react'; +import React, {useEffect, useState} from 'react'; import {Link as RouterLink, NavLink} from 'react-router-dom'; import { AppBar as MuiAppBar, @@ -51,10 +51,8 @@ import ListItemText from '@mui/material/ListItemText'; import * as ROUTES from '../../constants/routes'; import {getActiveProjectList} from '../../sync/projects'; -import {listenProjectList} from '../../databaseAccess'; import SystemAlert from '../components/alert'; import {ProjectInformation} from 'faims3-datamodel'; -import {useEventedPromise} from '../pouchHook'; import AppBarAuth from '../components/authentication/appbarAuth'; import {TokenContents} from 'faims3-datamodel'; import {checkToken} from '../../utils/helpers'; @@ -178,14 +176,11 @@ export default function MainAppBar(props: NavbarProps) { const isAuthenticated = checkToken(props.token); const toggle = () => setIsOpen(!isOpen); - console.log('want to get the project list'); - const pouchProjectList = useEventedPromise( - 'AppBar component', - getActiveProjectList, - listenProjectList, - true, - [] - ).expect(); + const [projectList, setProjectList] = useState([]); + + useEffect(() => { + getActiveProjectList().then(projects => setProjectList(projects)); + }); const topMenuItems: Array = [ { @@ -200,7 +195,7 @@ export default function MainAppBar(props: NavbarProps) { to: ROUTES.WORKSPACE, disabled: !isAuthenticated, }, - pouchProjectList === null + projectList === null ? { title: 'Loading notebooks...', icon: , @@ -208,7 +203,7 @@ export default function MainAppBar(props: NavbarProps) { disabled: true, } : isAuthenticated - ? getNestedProjects(pouchProjectList) + ? getNestedProjects(projectList) : { title: 'Notebooks', icon: , diff --git a/src/gui/pages/record-create.test.tsx b/src/gui/pages/record-create.test.tsx index 978c83af0..60832ff5f 100644 --- a/src/gui/pages/record-create.test.tsx +++ b/src/gui/pages/record-create.test.tsx @@ -285,7 +285,7 @@ vi.mock('react-router-dom', async () => { }; }); -vi.mock('../../databaseAccess', () => ({ +vi.mock('../../sync/projects', () => ({ getProjectInfo: mockGetProjectInfo, listenProjectInfo: vi.fn(() => {}), })); diff --git a/src/gui/pages/record-create.tsx b/src/gui/pages/record-create.tsx index adb9c5d73..c661abffd 100644 --- a/src/gui/pages/record-create.tsx +++ b/src/gui/pages/record-create.tsx @@ -43,7 +43,6 @@ import TabContext from '@mui/lab/TabContext'; import TabList from '@mui/lab/TabList'; import TabPanel from '@mui/lab/TabPanel'; import {generateFAIMSDataID} from 'faims3-datamodel'; -import {listenProjectInfo} from '../../sync/projects'; import {getProjectInfo} from '../../sync/projects'; import {ProjectID, RecordID} from 'faims3-datamodel'; import {ProjectUIModel, ProjectInformation} from 'faims3-datamodel'; @@ -55,7 +54,6 @@ import RecordDelete from '../components/notebook/delete'; import {newStagedData} from '../../sync/draft-storage'; import Breadcrumbs from '../components/ui/breadcrumbs'; import RecordForm from '../components/record/form'; -import {useEventedPromise, constantArgsShared} from '../pouchHook'; import UnpublishedWarning from '../components/record/unpublished_warning'; import DraftSyncStatus from '../components/record/sync_status'; import {grey} from '@mui/material/colors'; @@ -347,30 +345,20 @@ export default function RecordCreate() { if (record_id !== undefined) draft_record_id = record_id; if (location.state && location.state.child_record_id !== undefined) draft_record_id = location.state.child_record_id; //pass record_id from parent - let project_info: ProjectInformation | null; + const [projectInfo, setProjectInfo] = useState( + null + ); + useEffect(() => { + if (project_id) + getProjectInfo(project_id).then(info => setProjectInfo(info)); + }, [project_id]); - try { - project_info = useEventedPromise( - 'RecordCreate page', - getProjectInfo, - constantArgsShared(listenProjectInfo, project_id!), - false, - [project_id], - project_id! - ).expect(); - } catch (err: any) { - if (err.message !== 'missing') { - throw err; - } else { - return ; - } - } let breadcrumbs = [ // {link: ROUTES.INDEX, title: 'Home'}, {link: ROUTES.NOTEBOOK_LIST, title: 'Notebooks'}, { link: ROUTES.NOTEBOOK + project_id, - title: project_info !== null ? project_info.name! : project_id!, + title: projectInfo !== null ? projectInfo.name! : project_id!, }, {title: 'Draft'}, ]; @@ -386,7 +374,7 @@ export default function RecordCreate() { {link: ROUTES.NOTEBOOK_LIST, title: 'Notebooks'}, { link: ROUTES.NOTEBOOK + project_id, - title: project_info !== null ? project_info.name! : project_id!, + title: projectInfo !== null ? projectInfo.name! : project_id!, }, { link: ROUTES.NOTEBOOK + location.state.parent_link, @@ -411,7 +399,7 @@ export default function RecordCreate() { /> ) : ( ; - } - } + const [projectInfo, setProjectInfo] = useState( + null + ); + useEffect(() => { + if (project_id) + getProjectInfo(project_id).then(info => setProjectInfo(info)); + }, [project_id]); const [uiSpec, setUISpec] = useState(null as null | ProjectUIModel); const [revisions, setRevisions] = React.useState([] as string[]); @@ -188,7 +174,7 @@ export default function Record() { {link: ROUTES.NOTEBOOK_LIST, title: 'Notebooks'}, { link: ROUTES.NOTEBOOK + project_id, - title: project_info !== null ? project_info.name! : project_id!, + title: projectInfo !== null ? projectInfo.name! : project_id!, }, {title: hrid ?? record_id}, ]); @@ -307,7 +293,7 @@ export default function Record() { {link: ROUTES.NOTEBOOK_LIST, title: 'Notebooks'}, { link: ROUTES.NOTEBOOK + project_id, - title: project_info !== null ? project_info.name! : project_id!, + title: projectInfo !== null ? projectInfo.name! : project_id!, }, {title: hrid! ?? record_id!}, ]; @@ -322,7 +308,7 @@ export default function Record() { { link: ROUTES.NOTEBOOK + project_id, title: - project_info !== null ? project_info.name! : project_id!, + projectInfo !== null ? projectInfo.name! : project_id!, }, { link: newParent[0]['route'], From 56103bc9b4e373b1dbf489ee5fc39167ebfd0130 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 22:07:00 +1000 Subject: [PATCH 41/43] add empty depedencies to useEffects Signed-off-by: Steve Cassidy --- src/gui/components/metadataRenderer.tsx | 2 +- src/gui/components/notebook/add_record_by_type.tsx | 2 +- src/gui/layout/appBar.tsx | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/gui/components/metadataRenderer.tsx b/src/gui/components/metadataRenderer.tsx index 2a1b849c3..e370b53ee 100644 --- a/src/gui/components/metadataRenderer.tsx +++ b/src/gui/components/metadataRenderer.tsx @@ -41,7 +41,7 @@ export default function MetadataRenderer(props: MetadataProps) { getMetadataValue(project_id, metadata_key).then(v => { setValue(v as string); }); - }); + }, []); return chips && value !== '' ? ( { getUiSpecForProject(project_id).then(u => setUiSpec(u)); - }); + }, []); if (uiSpec === undefined) { return ; diff --git a/src/gui/layout/appBar.tsx b/src/gui/layout/appBar.tsx index 5d322b5a2..e20d569e7 100644 --- a/src/gui/layout/appBar.tsx +++ b/src/gui/layout/appBar.tsx @@ -180,7 +180,7 @@ export default function MainAppBar(props: NavbarProps) { useEffect(() => { getActiveProjectList().then(projects => setProjectList(projects)); - }); + }, []); const topMenuItems: Array = [ { From ce20ee813403e015e66722b2efa2ce1a32d714bb Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Fri, 12 Jul 2024 22:07:19 +1000 Subject: [PATCH 42/43] don't use replaceAll - doesn't work on Android Signed-off-by: Steve Cassidy --- src/sync/process-initialization.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sync/process-initialization.ts b/src/sync/process-initialization.ts index d4f275348..729f44036 100644 --- a/src/sync/process-initialization.ts +++ b/src/sync/process-initialization.ts @@ -53,7 +53,7 @@ export async function update_directory() { // TODO: the name and description should come from the api const listing = { - _id: url.host.replaceAll('.', '-'), + _id: url.host, conductor_url: CONDUCTOR_URL, name: 'CONDUCTOR NAME', description: 'CONDUCTOR DESCRIPTION', From fcb43207941f7262ed5d93ad21fe1ce72e80c8c0 Mon Sep 17 00:00:00 2001 From: Steve Cassidy Date: Sun, 14 Jul 2024 21:47:49 +1000 Subject: [PATCH 43/43] default project description to empty Signed-off-by: Steve Cassidy --- src/sync/projects.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sync/projects.ts b/src/sync/projects.ts index d2bb26ba7..54b7a8fd0 100644 --- a/src/sync/projects.ts +++ b/src/sync/projects.ts @@ -199,7 +199,7 @@ function formatProjectInformation(project_id: string, project: ProjectObject) { return { project_id: project_id, name: project.name, - description: project.description || 'No description', + description: project.description || '', last_updated: project.last_updated || 'Unknown', created: project.created || 'Unknown', status: project.status || 'Unknown',