Releases · ExposuresProvider/cam-pipeline

What's Changed

Prettier visualization by @gaurav in #13
Add multiline labels and improve output by @gaurav in #14
Add README. by @balhoff in #15
adding quiet arg to arq commands by @jdr0887 in #19
Commit slot-mappings query. by @balhoff in #20
adding target for slot_mappings and formatting ontologies-merged by @jdr0887 in #21
Avoid "argument list too long" problem by @balhoff in #22
Use ro-base. by @balhoff in #23
Revise handling of biolink to ontology mappings. by @balhoff in #24
Fix various issues with Makefile. by @balhoff in #25
Create query wrt issue#28 by @rajshruti18 in #29
Create query wrt issue#28 by @rajshruti18 in #30
Fix for issue #31 by @rajshruti18 in #32
Issue 31 by @Shalsh23 in #33
Stop reasoning over Biolink slots by @balhoff in #35
Update from master by @balhoff in #36
Fix typo by @balhoff in #37
Use memory settings for robot and arq by @balhoff in #38
Fix for issue #40 by @rajshruti18 in #41
Issue 27 jenkins by @Shalsh23 in #43
Update Makefile by @rajshruti18 in #45
Add mapping from new gene-to-gene chain to biolink by @balhoff in #44
Update missing-biolink-relation query to new mapping style. by @balhoff in #46
Update Makefile by @rajshruti18 in #47
Add target to extract predicates between all pairs of source and target by @Shalsh23 in #42
adding predicates.tsv post processing/formatting by @jdr0887 in #49
Fixing missing mappings due to biolink modeling changes. by @balhoff in #50
Remove accidental pipe. by @balhoff in #52
Update to fix problem with swrl variable incorrectly becoming an OWL individual. by @balhoff in #53
Fix for #57 by @rajshruti18 in #58
Fix for #59 by @rajshruti18 in #61
Fix for #59 by @rajshruti18 in #60
Use canonical_record to map any types, not just Uniprot. by @balhoff in #62
Update to new linkml namespace. by @balhoff in #63
Too many classes are being put under gene. by @balhoff in #64
Filter for triples from reactome model by @Shalsh23 in #55
Filter for bl:Entity class by @Shalsh23 in #54
Update owl-missing-biolink-relation.rq by @balhoff in #65
Specify biolink version. by @balhoff in #67
Update pipeline-tools version. by @balhoff in #68
Use biolink-model 2. by @balhoff in #69
Update delete-non-production-models.ru by @rajshruti18 in #71
Use materializer for computing inferences. by @balhoff in #72
Add provenance for SIGNOR by @gaurav in #77
Add Kubernetes CronJob file to repo by @gaurav in #78
Improve debugging of cam-pipeline on Kubernetes by @gaurav in #84
Convert the CAM-KP knowledge graph into TSV for import into Orion by @gaurav in #97
Make branch kg-tsv run on Sterling by @gaurav in #100
Add qualifiers to the CAM-KP TSV output by @gaurav in #98
Add a property chain to increase entity-to-entity causal inferences. by @balhoff in #107
Include AOP models in KG. by @balhoff in #106
Re-enable CTD by @balhoff in #108
Fix incorrect relation mapping by @balhoff in #121
Add Python tests for Automat-CAM-KP by @gaurav in #111
Add mapping for 'regulates characteristic'. by @balhoff in #127
Updated tests for 2024feb15 release by @gaurav in #130
Updated PubChem identifiers to the correct ones for the test by @gaurav in #126
Add a GitHub Pages-based frontend to query CAM-KP by @gaurav in #131
Update tests as per Automat-CAM-KP changes by @gaurav in #139