From d473276cf2be0282fb1650d4c5a913af4aebb9bd Mon Sep 17 00:00:00 2001
From: Sefa Kilic <sefa1@umbc.edu>
Date: Tue, 13 Sep 2016 22:21:10 -0700
Subject: [PATCH] make ECO terms visible

---
 src/core/models.py                               |  8 +++++---
 src/static/collectf.css                          | 12 ++++++++++++
 src/templates/browse/experimental_technique.html |  8 ++++++--
 src/templates/browse/view_motif_reports.html     |  2 +-
 4 files changed, 24 insertions(+), 6 deletions(-)

diff --git a/src/core/models.py b/src/core/models.py
index ed2e2e6..37485cc 100644
--- a/src/core/models.py
+++ b/src/core/models.py
@@ -520,7 +520,7 @@ def extend_sequence(self, n=250):
 
     class Meta:
         verbose_name = "Site instance"
-        
+
 
 
 class Curation_SiteInstance(models.Model):
@@ -753,6 +753,10 @@ class Meta:
         verbose_name = "Experimental technique"
         ordering = ['name']
 
+    def ECO_term_link(self):
+        """Returns the URL for the ECO term."""
+        return "http://purl.obolibrary.org/obo/" + self.EO_term.replace(':', '_')
+
 
 class ExperimentalTechniqueCategory(models.Model):
     """Experimental technique category table.
@@ -906,5 +910,3 @@ def __unicode__(self):
 
     class Meta:
         verbose_name = "GO term"
-
-    
diff --git a/src/static/collectf.css b/src/static/collectf.css
index 6f231bf..46d7c73 100644
--- a/src/static/collectf.css
+++ b/src/static/collectf.css
@@ -75,3 +75,15 @@ img {
 .label-blue {
     background-color: #2196F3;
 }
+
+table a:link {
+    text-decoration: none !important;
+}
+
+table a:not(.btn) {
+    text-decoration: none !important;
+}
+
+table a:hover {
+    text-decoration: underline !important;
+}
diff --git a/src/templates/browse/experimental_technique.html b/src/templates/browse/experimental_technique.html
index bb2d087..0e3d808 100644
--- a/src/templates/browse/experimental_technique.html
+++ b/src/templates/browse/experimental_technique.html
@@ -6,8 +6,10 @@
 
 <a data-toggle="modal" data-target="#modal{{ technique.technique_id }}">
   {{ technique.name }}
+  {% if technique.EO_term %}
+  ({% with term=technique.EO_term %}{{ term }}{% endwith %})
+  {% endif %}
 </a>
-
 <div id="modal{{ technique.technique_id }}" class="modal fade" role="dialog">
   <div class="modal-dialog">
     <div class="modal-content">
@@ -15,7 +17,9 @@
         <button type="button" class="close" data-dismiss="modal">&times;</button>
         <h4 class="modal-title">
           {{ technique.name }}
-          {% if technique.EO_term %} - <a href="#">{{ technique.EO_term }}</a> {% endif %}
+          {% if technique.EO_term %}
+          {% with term=technique.EO_term %} - <a href="{{ technique.ECO_term_link }}" target="_blank">{{ term }}</a>{% endwith %}
+          {% endif %}
         </h4>
       </div>
       <div class="modal-body">
diff --git a/src/templates/browse/view_motif_reports.html b/src/templates/browse/view_motif_reports.html
index db94d65..ebb7133 100644
--- a/src/templates/browse/view_motif_reports.html
+++ b/src/templates/browse/view_motif_reports.html
@@ -26,7 +26,7 @@ <h3>{{ motif_report.TF_name }}
               UniProtKB: {{ accession }}</span>{% if not forloop.last %},{% endif %}
           </a>
           {% endfor %}
-          binding site collection of <i>{{ motif_report.species_name }}</i>
+          regulon and binding site collection of <i>{{ motif_report.species_name }}</i>
         </h3>
 
         <ul class="nav nav-tabs" id="split_view_sites_tab">