Pending Job Start

[hillaryhe]

Hello,
I downloaded a protein structure from AlphaFold (PDB) and tried to use PDB2PQR but it gets stuck at "pending job start" for multiple days straight.

Bw
Hillary

[jbardhan]

Hi Hillary,

Can you please attach the PDB file here? It's easier for me to debug if you can post it in this thread.

Thanks very much,
Jay

[hillaryhe]

Hello Jay,

PDB file is not supported here and I can't upload it - is there another way I can send the file through?

Bw,
Hillary

[hillaryhe]

Hello Jay, Sorry I didn't realize I could just send through emails - here it is. Thank you in advance! Bw Hillary Original Email Sender:"Jaydeep Bardhan"< ***@***.*** &gt;; Sent Time:2024/5/2 16:23 To:"Electrostatics/pdb2pqr"< ***@***.*** &gt;; Cc recipient:"hillaryhe"< ***@***.*** &gt;;"Author"< ***@***.*** &gt;; Subject:Re: [Electrostatics/pdb2pqr] Pending Job Start (Issue #393) Hi Hillary, Can you please attach the PDB file here? It's easier for me to debug if you can post it in this thread. Thanks very much, Jay — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***&gt;

[jbardhan]

Hi,

The email mechanism doesn't seem to work -- and that is news to me, sorry about that.

You should be able to upload it after renaming the file with a .txt extension, see attached.
1BNA.txt

Thanks very much,
Jay

[hillaryhe]

Hello Jay,
PRIP1 Alpha fold structure prediction.txt
I hope it works.

Bw
Hillary

[hillaryhe]

Hello, is there any update?