Create a genome summary statistic for each genome (in ncbi_download), that WARNs the user that the species may not run correctly, as it is in too many contigs (>50) should have a warning.

[chriswyatt1]

Here is a good example of a program we can add:
https://www.biostars.org/p/161807/

[chriswyatt1]

#28 We could link these issues.

The example nf-core module could be quast, to check genome integrity.

The nice thing of this module is that it takes a genome and gff file (same as this pipeline), plus it will run at the same time as everything else, so shouldn't slow the pipeline.

[chriswyatt1]

Simon added the nf-core/seqkit
/stats module, which now prints the N50 to file.

We additionally could make the pipeline stop if any do not pass a specific threshold.