diff --git a/chip.wdl b/chip.wdl index 1e1e652..5214f44 100644 --- a/chip.wdl +++ b/chip.wdl @@ -7,10 +7,10 @@ struct RuntimeEnvironment { } workflow chip { - String pipeline_ver = 'v2.0.1' + String pipeline_ver = 'v2.1.0' meta { - version: 'v2.0.1' + version: 'v2.1.0' author: 'Jin wook Lee' email: 'leepc12@gmail.com' @@ -19,8 +19,8 @@ workflow chip { specification_document: 'https://docs.google.com/document/d/1lG_Rd7fnYgRpSIqrIfuVlAz2dW1VaSQThzk836Db99c/edit?usp=sharing' - default_docker: 'encodedcc/chip-seq-pipeline:v2.0.1' - default_singularity: 'library://leepc12/default/chip-seq-pipeline:v2.0.1' + default_docker: 'encodedcc/chip-seq-pipeline:v2.1.0' + default_singularity: 'library://leepc12/default/chip-seq-pipeline:v2.1.0' croo_out_def: 'https://storage.googleapis.com/encode-pipeline-output-definition/chip.croo.v5.json' parameter_group: { @@ -71,8 +71,8 @@ workflow chip { } input { # group: runtime_environment - String docker = 'encodedcc/chip-seq-pipeline:v2.0.1' - String singularity = 'library://leepc12/default/chip-seq-pipeline:v2.0.1' + String docker = 'encodedcc/chip-seq-pipeline:v2.1.0' + String singularity = 'library://leepc12/default/chip-seq-pipeline:v2.1.0' String conda = 'encode-chip-seq-pipeline' String conda_macs2 = 'encode-chip-seq-pipeline-macs2' String conda_spp = 'encode-chip-seq-pipeline-spp' @@ -1564,7 +1564,7 @@ workflow chip { if ( has_input_of_bam2ta_ctl && !has_output_of_bam2ta_ctl ) { call bam2ta as bam2ta_ctl { input : bam = ctl_nodup_bam_, - subsample = subsample_reads, + subsample = ctl_subsample_reads, paired_end = ctl_paired_end_, mito_chr_name = mito_chr_name_,