From 25e6965bfca94eddb014943aad55e214ae428e2c Mon Sep 17 00:00:00 2001 From: Jin wook Lee Date: Thu, 24 Mar 2022 09:59:30 -0700 Subject: [PATCH 1/2] fix wrong shebang (py2) --- src/assign_multimappers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/assign_multimappers.py b/src/assign_multimappers.py index 0e1039b1..fed90b75 100755 --- a/src/assign_multimappers.py +++ b/src/assign_multimappers.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python2 +#!/usr/bin/env python3 # piped script to take multimappers and randomly assign # requires a qname sorted file!! From c0e372d8896529614f6dd52f535bd9444a8b076b Mon Sep 17 00:00:00 2001 From: Jin wook Lee Date: Thu, 24 Mar 2022 10:00:47 -0700 Subject: [PATCH 2/2] bump ver --- chip.wdl | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/chip.wdl b/chip.wdl index 66a383a7..9dead742 100644 --- a/chip.wdl +++ b/chip.wdl @@ -7,10 +7,10 @@ struct RuntimeEnvironment { } workflow chip { - String pipeline_ver = 'v2.1.5' + String pipeline_ver = 'v2.1.6' meta { - version: 'v2.1.5' + version: 'v2.1.6' author: 'Jin wook Lee' email: 'leepc12@gmail.com' @@ -19,8 +19,8 @@ workflow chip { specification_document: 'https://docs.google.com/document/d/1lG_Rd7fnYgRpSIqrIfuVlAz2dW1VaSQThzk836Db99c/edit?usp=sharing' - default_docker: 'encodedcc/chip-seq-pipeline:v2.1.5' - default_singularity: 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.5.sif' + default_docker: 'encodedcc/chip-seq-pipeline:v2.1.6' + default_singularity: 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.6.sif' croo_out_def: 'https://storage.googleapis.com/encode-pipeline-output-definition/chip.croo.v5.json' parameter_group: { @@ -71,8 +71,8 @@ workflow chip { } input { # group: runtime_environment - String docker = 'encodedcc/chip-seq-pipeline:v2.1.5' - String singularity = 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.5.sif' + String docker = 'encodedcc/chip-seq-pipeline:v2.1.6' + String singularity = 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.6.sif' String conda = 'encode-chip-seq-pipeline' String conda_macs2 = 'encode-chip-seq-pipeline-macs2' String conda_spp = 'encode-chip-seq-pipeline-spp'