Any chance of making a Conda package?

[CharlotteAnne]

Any chance of packaging this up for Bioconda? would make containerising + Nextflow stuff so much easier!!

Program is working so great I want it in my pipelines!

[CharlotteAnne]

Another thing!! In this same vein it would great if you could add a version argument to the tool so we can version control our pipelines using the tool.

[CharlotteAnne]

Hi - I've gone ahead and make a conda package for UMICollapse >> https://anaconda.org/bioconda/umicollapse
users can now install using the command conda install -c bioconda umicollapse. You might want to add this to your documentation. The versioning is pinned to my fork of the repo. Once this propogates to biocontainers, I can also submit the nf-core module to make it easy to use for Nextflow programmers.

[Daniel-Liu-c0deb0t]

Ah thank you so much! (I have not published packages to bioconda before.)

[CharlotteAnne]

No problem, happy to help!

[CharlotteAnne]

just realised there's an issue with the dependencies :// - will try to fix now!!

[CharlotteAnne]

its fixed now, should be working https://anaconda.org/bioconda/umicollapse

[CharlotteAnne]

Hi -- just a nudge, it would be worth adding this as an installation instruction in your readme as it will make things easier for a lot of people. Can be installed to a conda environment with conda install -c bioconda umicollapse

[CharlotteAnne]

the nf-core module is also available and tested >> https://nf-co.re/modules/umicollapse

[Daniel-Liu-c0deb0t]

Sorry for the delay. I've added the conda instructions and the nf-core link to the readme. Thanks for doing this!