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parallelization ? #16

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karlkashofer opened this issue May 15, 2022 · 1 comment
Open

parallelization ? #16

karlkashofer opened this issue May 15, 2022 · 1 comment

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@karlkashofer
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Hi !
I am looking for ways to parallelize umicollapse.
What does
-t: parallelize the deduplication of each separate alignment position. Using this is discouraged as it is lacking many features.
mean ? What features are missing ?
thanks,
KK
@Daniel-Liu-c0deb0t
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Daniel-Liu-c0deb0t commented May 16, 2022 •
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If I recall correctly, parallelization with -t only works with single-end reads and with the sam/bam modes.

Also I don't think I observed a large performance increase from parallelism.

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@Daniel-Liu-c0deb0t @karlkashofer