From eef15408848c86d163872e7d49a693a9fb45a7b7 Mon Sep 17 00:00:00 2001 From: Alan Bergland Date: Tue, 19 Nov 2024 08:49:05 -0500 Subject: [PATCH] little thanks --- docs/CHANGE_LOG.md | 5 ++--- docs/data-files/SNP-tables.md | 6 +++--- docs/resources.md | 8 ++++++-- 3 files changed, 11 insertions(+), 8 deletions(-) diff --git a/docs/CHANGE_LOG.md b/docs/CHANGE_LOG.md index 9a98472..ef5f5e6 100644 --- a/docs/CHANGE_LOG.md +++ b/docs/CHANGE_LOG.md @@ -1,10 +1,10 @@ --- layout: default -title: Changelog +title: Release Notes nav_order: 6 permalink: /changelog --- -# Changelog +# Release Notes --- ### 24 August 2024 @@ -13,7 +13,6 @@ permalink: /changelog * sample metadata fixed: `DESTv2/populationInfo/scripts/update_sampleMetaData_26August2024.R` * VCF/GDS fixed: `DESTv2/populationInfo/scripts/update_DataFiles_26August2024.sh` * mapping output renamed: `DESTv2/populationInfo/scripts/update_pipelineOutputNames_24August2024.sh` - ### 3 May 2024 * Update the metadata to include standardized baits and country codes diff --git a/docs/data-files/SNP-tables.md b/docs/data-files/SNP-tables.md index 3483cb4..777c0ad 100644 --- a/docs/data-files/SNP-tables.md +++ b/docs/data-files/SNP-tables.md @@ -23,7 +23,7 @@ You can also download all files including SNP tables using Globus (it is free). | File Name | Download | Description | MD5 Hash | Size | |:----------------------------------------|:------------------|:------------------|:--------| -| dest.all.PoolSNP.001.50.3May2024.ann.gds| [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.24Aug2024.ann.gds){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 ! | d963069ffb48736667b33e0ef2d73d1f | 11G | +| dest.all.PoolSNP.001.50.24Aug2024.ann.gds| [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.24Aug2024.ann.gds){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 ! | d963069ffb48736667b33e0ef2d73d1f | 11G | | dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | 09d4c7d0b7cfaedad4b33c31b6e82ead | 3.5G | | dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | b823c9df2fa85a043f7f5472c05d994e | 21G | | dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | e49a4a4f1ae3180a1394727c89d0a4eb | 4G | @@ -33,8 +33,8 @@ You can also download all files including SNP tables using Globus (it is free). | File Name | Download | Description | MD5 Hash | Size | |:----------------------------------------|:------------------|:------------------|:--------| -| dest.all.PoolSNP.001.50.3May2024.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | ebecc1d45398bcc40b24929a2c29efa9 | 11G | -| dest.all.PoolSNP.001.50.3May2024.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | 30664919120efbe15c70b37eb4a6e4ce | +| dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | ebecc1d45398bcc40b24929a2c29efa9 | 11G | +| dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | 30664919120efbe15c70b37eb4a6e4ce | | dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | b1d77695b2ad9732e2209699f55cef6e | | dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | 4eb0353058caa134248696bd271c0c71 | | dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | eceebf5df4c415999062474b16f8b9d0 | diff --git a/docs/resources.md b/docs/resources.md index 3452335..00b50fa 100644 --- a/docs/resources.md +++ b/docs/resources.md @@ -25,6 +25,10 @@ For more Drosophila genome alignment data:
[Drosophila Genome Nexus](https://www.johnpool.net/genomes.html){:.btn}


Attribution and Usage Policy
-The data available on dest.bio is open and available for use by the community. We ask that any paper which uses the DEST dataset (in whole or in part) cite [Kapun et al 2021](https://www.biorxiv.org/content/10.1101/2021.02.01.428994v3.abstract). +The data available on dest.bio is open and available for use by the community.
+We ask that any paper which uses the DEST v1 dataset (in whole or in part) cite [Kapun et al 2021 Molecular Biology and Evolution](https://academic.oup.com/mbe/article/38/12/5782/6361628).
+We ask that any paper which uses the DEST v2 dataset (in whole or in part) cite [Nunez et al 2024 bioRxiv](https://www.biorxiv.org/content/10.1101/2024.11.10.622744v1.abstract).
-This website is built and maintained by the [Bergland lab](https://bergland-lab.org). + +This website is built and maintained by the [Bergland lab](https://bergland-lab.org).
+Please report errors or bugs with this website to Alan Bergland - aob2x@virginia.edu