diff --git a/.DS_Store b/.DS_Store index a3dcdbf..cc32ab2 100644 Binary files a/.DS_Store and b/.DS_Store differ diff --git a/assets/.DS_Store b/assets/.DS_Store index 767212a..2ef481b 100644 Binary files a/assets/.DS_Store and b/assets/.DS_Store differ diff --git a/assets/data_access.pptx b/assets/data_access.pptx deleted file mode 100644 index ae973e6..0000000 Binary files a/assets/data_access.pptx and /dev/null differ diff --git a/assets/~$data_access.pptx b/assets/~$data_access.pptx deleted file mode 100644 index 9e6a49a..0000000 Binary files a/assets/~$data_access.pptx and /dev/null differ diff --git a/docs/data-files/SNP-tables.md b/docs/data-files/SNP-tables.md index e4332ca..8d0259b 100644 --- a/docs/data-files/SNP-tables.md +++ b/docs/data-files/SNP-tables.md @@ -13,32 +13,39 @@ nav_order: 1 1. TOC {:toc}
-### bcf Files - Click to download a .txt file with a list of all download links - -| File Name | Download | Description | MD5 Hash | -|:----------------------------------------|:------------------|:------------------|:-------------| -| dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | PoolSeq samples using PoolSNP | 07bc5fec3c244ed10b512e51d0a86b4c | -| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf){: .btn .btn-primary } | PoolSeq samples using SNAPE | 8cc32fbccdb952b68b9d4a941992510b | -| dest.all.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.all.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | All samples using PoolSNP | 2ab95be6888af37d718b8b458f5213b8 | ### gds Files - Click to download a .txt file with a list of all download links + Click to download a .txt file with a list of all download links
+ +You can also download all files including SNP tables using Globus (it is free). The shared link is here. You can learn how to set up a personal Globus account here. -| File Name | Download | MD5 Hash | +| File Name | Download | Description | MD5 Hash | |:----------------------------------------|:------------------|:------------------| -| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | 09d4c7d0b7cfaedad4b33c31b6e82ead | -| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | b823c9df2fa85a043f7f5472c05d994e | -| dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | e49a4a4f1ae3180a1394727c89d0a4eb | +| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.gds){: .btn .btn-primary } | DEST_V2 - current version | 6a0678bc7bd4da74dd3cb2a34bd1b50f | +| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | 09d4c7d0b7cfaedad4b33c31b6e82ead | +| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | b823c9df2fa85a043f7f5472c05d994e | +| dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | e49a4a4f1ae3180a1394727c89d0a4eb | ### vcf Files Click to download a .txt file with a list of all download links -| File Name | Download | MD5 Hash | +| File Name | Download | Description | MD5 Hash | |:----------------------------------------|:------------------|:------------------| -| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | b1d77695b2ad9732e2209699f55cef6e | -| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | 4eb0353058caa134248696bd271c0c71 | -| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | eceebf5df4c415999062474b16f8b9d0 | -| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | c3767b15607e20c4058db0d905f5917f | -| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | 3c85da22c0075ec34e994c0f2a27d754 | -| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | e83543ee42bdc8b2bb107d68c223538b | +| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version | 03f2afbff7f7043052da1249ecad53b8 | +| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version | d532f8e0e6a182355cdcfb238534d611 | +| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | b1d77695b2ad9732e2209699f55cef6e | +| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | 4eb0353058caa134248696bd271c0c71 | +| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | eceebf5df4c415999062474b16f8b9d0 | +| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | c3767b15607e20c4058db0d905f5917f | +| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | 3c85da22c0075ec34e994c0f2a27d754 | +| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | e83543ee42bdc8b2bb107d68c223538b | + + +### bcf Files + Click to download a .txt file with a list of all download links + +| File Name | Download | Description | MD5 Hash | +|:----------------------------------------|:------------------|:------------------|:-------------| +| dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: PoolSeq samples using PoolSNP | 07bc5fec3c244ed10b512e51d0a86b4c | +| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: PoolSeq samples using SNAPE | 8cc32fbccdb952b68b9d4a941992510b | +| dest.all.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.all.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: All samples using PoolSNP | 2ab95be6888af37d718b8b458f5213b8 |