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The current implementation of KDE computation (partly in rtdc_dataset.core) is not very clean. It would be best to have a new RTDCKDEEstimator class that can:
be instantiated with parameters such as kde_method="histogram"
uses the same KDE for scatter plot data as for contour data
this implies that for scatter plot data, the KDE is computed on a grid as well (and not for each point)
it would be nice to see timing information that compares a large and a small dataset with the methods implemented currently
there should be a method that refines the class parameters until the contour is smooth (no kinks, probably only applies to the histogram method)
This will be a breaking feature, so it would probably make sense to deprecate it properly in rtdc_dataset.core and dclab.kde_methods.
The current implementation of KDE computation (partly in
rtdc_dataset.core
) is not very clean. It would be best to have a newRTDCKDEEstimator
class that can:kde_method="histogram"
This will be a breaking feature, so it would probably make sense to deprecate it properly in
rtdc_dataset.core
anddclab.kde_methods
.Related issues:
ZELLMECHANIK-DRESDEN/ShapeOut2#110
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