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arisLIMS

arisLIMS is an in-house inventory management system designed for dealing with sample documentation and tracking.

Installation

Setting up the database on Linux (Ubuntu)

  1. Create containers
docker-compose up
  1. While app is running, check to see if all 3 containers are running
docker container ls
  1. Enter the mysql container and log into mysql
docker exec -it CONTAINER_ID bash
mysql -u root -p
  1. Enter the following commands
GRANT ALL PRIVILEGES ON *.* TO 'lims_admin' WITH GRANT OPTION;
GRANT ALL PRIVILEGES ON *.* TO 'root' WITH GRANT OPTION;
flush privileges;
exit
  1. arisLIMS can now be accessed on localhost:8080 with username & password both set to 'admin'

Usage

  • Home tab and message board
  • Logging in and creating admin/non-admin users
  • Sample tab, changing metadata, flagging samples as low quality missing
  • Using the csv file to change several samples at once
  • missing sample management tab for samples that may be missing or may just be misplaced
  • Updating sample database

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Columbia

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