From 965318ae7e31998220e1f301b7f811980bdf3cb7 Mon Sep 17 00:00:00 2001 From: Quarto GHA Workflow Runner Date: Thu, 18 Jul 2024 21:01:13 +0000 Subject: [PATCH] Built site for gh-pages --- .nojekyll | 2 +- DaSH.html | 2 +- about.html | 95 ++++++++++++++++--- blogs.html | 56 +++++------ blogs/AWS_Management/index.html | 2 +- blogs/Additional_funding_Dec23/index.html | 2 +- blogs/Join_the_team/index.html | 2 +- blogs/NERC_funding_sep22/index.html | 2 +- blogs/Prenomics-Dec-2023/index.html | 2 +- blogs/R_intro_may23/index.html | 2 +- blogs/UKRN_FAIR_workshop_oct22/index.html | 2 +- .../index.html | 2 +- blogs/challenges_solutions_aug22/index.html | 2 +- blogs/code_retreat_apr22/index.html | 2 +- blogs/code_retreat_apr23/index.html | 2 +- blogs/code_retreat_dec22/index.html | 2 +- blogs/course_feedback_feb23/index.html | 2 +- blogs/ed-dash_training_jun22/index.html | 2 +- blogs/env_omics_challenges_jul22/index.html | 2 +- blogs/fair_at_cloudspan_jun22/index.html | 2 +- blogs/genomics_reflection_dec21/index.html | 2 +- blogs/genomics_self_study_may22/index.html | 2 +- blogs/northern_bug_apr23/index.html | 2 +- blogs/northern_bug_dec22/index.html | 2 +- .../index.html | 2 +- blogs/oracle_fellow_apr23/index.html | 2 +- .../index.html | 2 +- .../prenomics_summary_poster_jul22/index.html | 2 +- blogs/scholarships_oct22/index.html | 2 +- blogs/supporting_learners_nov22/index.html | 2 +- blogs/what_is_fair_may22/index.html | 2 +- cloud-span-aims.html | 2 +- contact-us.html | 2 +- index.html | 2 +- search.json | 51 +++++++++- .../index.html | 2 +- .../index.html | 2 +- .../Create Your Own AWS Instance/index.html | 2 +- self_study/Genomics/index.html | 2 +- .../index.html | 2 +- self_study/Prenomics/index.html | 2 +- self_study_courses.html | 2 +- sitemap.xml | 94 +++++++++--------- upcoming/Code Retreat/index.html | 2 +- upcoming/Core R/index.html | 2 +- upcoming/Genomics/index.html | 2 +- .../How to manage AWS Instances/index.html | 2 +- upcoming/NERC Metagenomics/index.html | 2 +- upcoming/Prenomics/index.html | 2 +- upcoming_courses.html | 14 +-- 50 files changed, 261 insertions(+), 139 deletions(-) diff --git a/.nojekyll b/.nojekyll index 8dcc66d..dd117b9 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -a2e45665 \ No newline at end of file +3c45af4e \ No newline at end of file diff --git a/DaSH.html b/DaSH.html index 0032048..744d7eb 100644 --- a/DaSH.html +++ b/DaSH.html @@ -2,7 +2,7 @@ - + diff --git a/about.html b/about.html index 1e433d9..c12e089 100644 --- a/about.html +++ b/about.html @@ -2,7 +2,7 @@ - + @@ -192,26 +192,26 @@

About

-
-

About

Cloud-SPAN trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing (HPC) infrastructure.

-

Cloud-SPAN hosts live training workshops and has also created educational training materials on topics such as using the command line, genomic analysis and whole metagenome sequencing (WMS) workflows. All of the training materials and live workshops are offered free of charge.

-
+

We host live training workshops and have also created educational training materials on topics such as using the command line, genomic analysis and whole metagenome sequencing (WMS) workflows. All of the training materials and live workshops are offered free of charge.

Our approach

Our learning resources

-

Core skills - Core R and Prenomics were created to introduce the fundamentals of the command line and to help learners gain confidence in their programming skills.

-

Specialised skills - Learners who were already confident with their command line abilities were encouraged to complete Genomics and Metagenomics. An online assessment was developed for learners to self assess their level of knowledge and help them to gauge which course would be most appropriate for them. The workshop on Statistically Useful Experimental Design was developed to help researchers to understand the issues underpinning good experimental design, to ensure that reproducible techniques are used to produce data.

+
+

Core skills - Core R and Prenomics were created to introduce the fundamentals of the command line and to help learners gain confidence in their programming skills.

+
+
+

Specialised skills - Learners who were already confident with their command line abilities were encouraged to complete Genomics and Metagenomics. An online assessment was developed for learners to self assess their level of knowledge and help them to gauge which course would be most appropriate for them.

@@ -225,7 +225,80 @@

Our learning resources

The only course which requires significant prior experience in programming is Automated Management of AWS Instances which is aimed at computing professionals and research software engineers.

-

Community We have established a welcoming online community to support learners, including self-paced learners, in the application of training materials to their own research data. Slack Code Retreats Handbook X and LinkedIn Links to Doctoral Training Partnerships

+
+
+
+

Core Skills

+
+

Prenomics

+

Prenomics is an interactive online course on understanding file systems and using the command line which takes place over 2 half days (roughly six hours of content). We developed this course after finding that people taking the Genomics course vary in their experiencing of navigating file systems and the command line (shell).

+

Topics covered include:

+
    +
  • file directory structure
    • +
  • logging onto a cloud instance
    • +
  • basic shell commands
    • +
  • using the shell to manipulate and search files
    • +
+

NO prior experience is necessary.

+
+
+

Core R

+

This short 2 hour course provides a whistle-stop tour of the R programming language and RStudio environment for total beginners. You will learn how to navigate RStudio, use the manual, import data and summarise/visualise it with a plot.

+
+

Genomics

+

Genomics is a practical, tutor-led course taking place over 4 half days or 2 full days (roughly twelve hours of content). It teaches data management and analytical skills using cloud resources for genomic research.

+

Topics covered include:

+
    +
  • project management for cloud genomics
    • +
  • writing shell scripts
    • +
  • assessing read quality
    • +
  • trimming/filtering reads
    • +
  • finding sequence variants.
    • +
+

A basic knowledge of the shell is required, which can be obtained by attending/self-studying the Prenomics course.

+
+
+
+
+

Specialised Skills

+
+

Metagenomics

+

Metagenomics teaches data analysis for metagenomics projects. It runs asynchronously with a mixture of taught sessions, offline self-study and drop-in sessions.

+

Topics covered include:

+
    +
  • an introduction to metagenomics and what it can be used for
    • +
  • performing quality control on long and short reads
    • +
  • improving your assembly with polishing
    • +
  • binning into species/metagenome-assembled genomes (MAGs)
    • +
  • taxonomic assignment and functional annotation
    • +
+

No prior knowledge of the shell is required as this course includes two sessions of Prenomics material.

+
+
+

Statistically Useful Experimental Design

+

The workshop was developed to help researchers to:

+
    +
  • understand the issues underpinning good experimental design
    • +
  • to ensure that reproducible techniques are used to produce data.
    • +
+
+
+

Create Your Own AWS Instance

+

This course shows you how to create and manage an Amazon Web Service instance like the ones used in all our courses, in order to:

+
    +
  • study course materials further
    • +
  • perform more complex analyses on your own data.
    • +
+
+
+

Automated Management of AWS Instances

+

Automated Management of AWS Instances is aimed at experienced command line users who have an interest in deploying and managing cloud resources for training purposes.

+

No prior knowledge of AWS concepts or tools is needed but learners should have significant experience with the Unix terminal and programming with Bash.

+
+
+
+

Community

+

We have established a welcoming online community to support learners, including self-paced learners, in the application of training materials to their own research data. Slack Code Retreats Handbook X and LinkedIn Links to Doctoral Training Partnerships

diff --git a/blogs.html b/blogs.html index 1a5ba76..e114875 100644 --- a/blogs.html +++ b/blogs.html @@ -2,7 +2,7 @@ - + @@ -262,7 +262,7 @@
Categories
-
+

Logo for AWS instances.

@@ -296,7 +296,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -324,7 +324,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -352,7 +352,7 @@
-
+

A graphic showing variant calling.

@@ -386,7 +386,7 @@
-
+

A graphic showing the Core R logo.

@@ -417,7 +417,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -448,7 +448,7 @@
-
+

A graphic showing a photo and the comment of one our participants to a previous code retreat

@@ -476,7 +476,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -507,7 +507,7 @@
-
+

A graphic plot showing the feedback results for the Prenomics course

@@ -544,7 +544,7 @@
-
+

A graphic NortherBUG meeting.

@@ -575,7 +575,7 @@
-
+

A graphic showing a photo and the comment of one our partic ipants to a previous code retreat

@@ -603,7 +603,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -631,7 +631,7 @@
-
+

A dumbbell plot with themes Command Line, Genomics and Project Organisation each having two dumbbells, one representing Genomics without Prenomics and one representing Genomics with Prenomics. The graph indicates the rating given before the course was taken and the score after, with a line joining the two. For all themes the score increases, usually by two or so points. The increase is greater for the 'with prenomics' dumbbells.

@@ -665,7 +665,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -699,7 +699,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -730,7 +730,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -761,7 +761,7 @@
-
+

A graphic showing two icons that represent cloud computing (with a cloud) and training (with a graduation hat)

@@ -792,7 +792,7 @@
-
+

Emma Rand's student, Chloe Brook, presenting her work at a Northern BUG meeting.

@@ -823,7 +823,7 @@
-
+

A graphics showing four icons labelled Hardware, Time, Skills and Software, with a note Challenges in Environmental Omics and the Cloud-SPAN logo.

@@ -851,7 +851,7 @@
-
+

A graphic showing an example of the mv command

@@ -885,7 +885,7 @@
-
+

A graphic showing the FAIR acronym.

@@ -916,7 +916,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -947,7 +947,7 @@
-
+

@@ -978,7 +978,7 @@
-
+

A graphic showing the Cloud-SPAN logo.

@@ -1009,7 +1009,7 @@
-
+

A graphic showing the 4 FAIR Principles: Findable (illustrated with a magnifying glass), Accessible (illustrated with an open lock), Interoperable (illustrated with interlocking gears) and Reusable (illustrated with a green recycling symbol)

@@ -1037,7 +1037,7 @@
-
+

@@ -1070,7 +1070,7 @@

-
+

A dumbbell plot with each topic covered in the course on its own line. The graph indicates the rating given before the course was taken and the score after, with a line joining the two. For all topics the score increases, usually by two or so points.

diff --git a/blogs/AWS_Management/index.html b/blogs/AWS_Management/index.html index 0f8bc82..93d72ef 100644 --- a/blogs/AWS_Management/index.html +++ b/blogs/AWS_Management/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/Additional_funding_Dec23/index.html b/blogs/Additional_funding_Dec23/index.html index e353f8b..d3ec3f8 100644 --- a/blogs/Additional_funding_Dec23/index.html +++ b/blogs/Additional_funding_Dec23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/Join_the_team/index.html b/blogs/Join_the_team/index.html index d9b5d85..1596cca 100644 --- a/blogs/Join_the_team/index.html +++ b/blogs/Join_the_team/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/NERC_funding_sep22/index.html b/blogs/NERC_funding_sep22/index.html index 6e74dd1..7eb0c02 100644 --- a/blogs/NERC_funding_sep22/index.html +++ b/blogs/NERC_funding_sep22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/Prenomics-Dec-2023/index.html b/blogs/Prenomics-Dec-2023/index.html index 1612af6..9f7878a 100644 --- a/blogs/Prenomics-Dec-2023/index.html +++ b/blogs/Prenomics-Dec-2023/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/R_intro_may23/index.html b/blogs/R_intro_may23/index.html index 95b3cdf..de9cb3e 100644 --- a/blogs/R_intro_may23/index.html +++ b/blogs/R_intro_may23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/UKRN_FAIR_workshop_oct22/index.html b/blogs/UKRN_FAIR_workshop_oct22/index.html index f9dca8c..f2d8a90 100644 --- a/blogs/UKRN_FAIR_workshop_oct22/index.html +++ b/blogs/UKRN_FAIR_workshop_oct22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/bioinformatics_meeting_careers_jun22/index.html b/blogs/bioinformatics_meeting_careers_jun22/index.html index fcc4476..d6f88c0 100644 --- a/blogs/bioinformatics_meeting_careers_jun22/index.html +++ b/blogs/bioinformatics_meeting_careers_jun22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/challenges_solutions_aug22/index.html b/blogs/challenges_solutions_aug22/index.html index 2122310..855a700 100644 --- a/blogs/challenges_solutions_aug22/index.html +++ b/blogs/challenges_solutions_aug22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/code_retreat_apr22/index.html b/blogs/code_retreat_apr22/index.html index f9ceefd..164c70d 100644 --- a/blogs/code_retreat_apr22/index.html +++ b/blogs/code_retreat_apr22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/code_retreat_apr23/index.html b/blogs/code_retreat_apr23/index.html index e9717db..48b263c 100644 --- a/blogs/code_retreat_apr23/index.html +++ b/blogs/code_retreat_apr23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/code_retreat_dec22/index.html b/blogs/code_retreat_dec22/index.html index 2639015..3d8c69d 100644 --- a/blogs/code_retreat_dec22/index.html +++ b/blogs/code_retreat_dec22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/course_feedback_feb23/index.html b/blogs/course_feedback_feb23/index.html index 7f9ffe7..29753e0 100644 --- a/blogs/course_feedback_feb23/index.html +++ b/blogs/course_feedback_feb23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/ed-dash_training_jun22/index.html b/blogs/ed-dash_training_jun22/index.html index df7e8f0..2d9b495 100644 --- a/blogs/ed-dash_training_jun22/index.html +++ b/blogs/ed-dash_training_jun22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/env_omics_challenges_jul22/index.html b/blogs/env_omics_challenges_jul22/index.html index 094d36f..2306c42 100644 --- a/blogs/env_omics_challenges_jul22/index.html +++ b/blogs/env_omics_challenges_jul22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/fair_at_cloudspan_jun22/index.html b/blogs/fair_at_cloudspan_jun22/index.html index b2e1765..467c506 100644 --- a/blogs/fair_at_cloudspan_jun22/index.html +++ b/blogs/fair_at_cloudspan_jun22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/genomics_reflection_dec21/index.html b/blogs/genomics_reflection_dec21/index.html index c5c733e..20d0d72 100644 --- a/blogs/genomics_reflection_dec21/index.html +++ b/blogs/genomics_reflection_dec21/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/genomics_self_study_may22/index.html b/blogs/genomics_self_study_may22/index.html index 3240822..407d0e4 100644 --- a/blogs/genomics_self_study_may22/index.html +++ b/blogs/genomics_self_study_may22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/northern_bug_apr23/index.html b/blogs/northern_bug_apr23/index.html index 2ba5b69..64dc11b 100644 --- a/blogs/northern_bug_apr23/index.html +++ b/blogs/northern_bug_apr23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/northern_bug_dec22/index.html b/blogs/northern_bug_dec22/index.html index fd34390..d770a98 100644 --- a/blogs/northern_bug_dec22/index.html +++ b/blogs/northern_bug_dec22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/northern_bug_scholarships_jul22/index.html b/blogs/northern_bug_scholarships_jul22/index.html index bca1b22..7ee76ed 100644 --- a/blogs/northern_bug_scholarships_jul22/index.html +++ b/blogs/northern_bug_scholarships_jul22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/oracle_fellow_apr23/index.html b/blogs/oracle_fellow_apr23/index.html index e9de02d..0f2cacb 100644 --- a/blogs/oracle_fellow_apr23/index.html +++ b/blogs/oracle_fellow_apr23/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/prenomics_lowering_barriers_oct22/index.html b/blogs/prenomics_lowering_barriers_oct22/index.html index c65eabd..7063f4c 100644 --- a/blogs/prenomics_lowering_barriers_oct22/index.html +++ b/blogs/prenomics_lowering_barriers_oct22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/prenomics_summary_poster_jul22/index.html b/blogs/prenomics_summary_poster_jul22/index.html index bd9352b..b613f86 100644 --- a/blogs/prenomics_summary_poster_jul22/index.html +++ b/blogs/prenomics_summary_poster_jul22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/scholarships_oct22/index.html b/blogs/scholarships_oct22/index.html index 330a1df..ee8d4df 100644 --- a/blogs/scholarships_oct22/index.html +++ b/blogs/scholarships_oct22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/supporting_learners_nov22/index.html b/blogs/supporting_learners_nov22/index.html index b950e66..5837bc7 100644 --- a/blogs/supporting_learners_nov22/index.html +++ b/blogs/supporting_learners_nov22/index.html @@ -2,7 +2,7 @@ - + diff --git a/blogs/what_is_fair_may22/index.html b/blogs/what_is_fair_may22/index.html index 2974ae4..7c4a78e 100644 --- a/blogs/what_is_fair_may22/index.html +++ b/blogs/what_is_fair_may22/index.html @@ -2,7 +2,7 @@ - + diff --git a/cloud-span-aims.html b/cloud-span-aims.html index f6d6497..13e4c9b 100644 --- a/cloud-span-aims.html +++ b/cloud-span-aims.html @@ -2,7 +2,7 @@ - + diff --git a/contact-us.html b/contact-us.html index d699751..f2205df 100644 --- a/contact-us.html +++ b/contact-us.html @@ -2,7 +2,7 @@ - + diff --git a/index.html b/index.html index db733e7..1428526 100644 --- a/index.html +++ b/index.html @@ -2,7 +2,7 @@ - + diff --git a/search.json b/search.json index 7a37704..df4be27 100644 --- a/search.json +++ b/search.json @@ -375,7 +375,56 @@ "href": "about.html", "title": "About", "section": "", - "text": "About\nCloud-SPAN trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing (HPC) infrastructure.\nCloud-SPAN hosts live training workshops and has also created educational training materials on topics such as using the command line, genomic analysis and whole metagenome sequencing (WMS) workflows. All of the training materials and live workshops are offered free of charge.\n\n\nOur approach\n\nInclusive to anyone interested in big data, we remove barriers that may have prevented learners from participating before. Only a laptop and an internet connection is required to access the materials and participate in workshops.\nLearning materials are designed to be as accessible as possible to beginners, with lots of guidance and reassurance along the way.\nDuring the live workshops learners participate in live- coding, learning by doing and providing practical hands-on experience with tutor support\nParticipants in taught workshops receive free access to an AWS instance containing all the software and data you’ll need for the duration of the teaching period.\nThe learning environment at live workshops is very welcoming, encouraging and inclusive. A lot of our learners are complete beginners or new to this world of big data, command line and cloud computing.\nScholarships are available to enable members of underrepresented groups and those with financial difficulties to participate in our training courses.\n\n\n\nOur learning resources\nCore skills - Core R and Prenomics were created to introduce the fundamentals of the command line and to help learners gain confidence in their programming skills.\nSpecialised skills - Learners who were already confident with their command line abilities were encouraged to complete Genomics and Metagenomics. An online assessment was developed for learners to self assess their level of knowledge and help them to gauge which course would be most appropriate for them. The workshop on Statistically Useful Experimental Design was developed to help researchers to understand the issues underpinning good experimental design, to ensure that reproducible techniques are used to produce data.\n\n\n\n\n\n\nNote\n\n\n\nThe only course which requires significant prior experience in programming is Automated Management of AWS Instances which is aimed at computing professionals and research software engineers.\n\n\nCommunity We have established a welcoming online community to support learners, including self-paced learners, in the application of training materials to their own research data. Slack Code Retreats Handbook X and LinkedIn Links to Doctoral Training Partnerships" + "text": "Cloud-SPAN trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing (HPC) infrastructure.\nWe host live training workshops and have also created educational training materials on topics such as using the command line, genomic analysis and whole metagenome sequencing (WMS) workflows. All of the training materials and live workshops are offered free of charge." + }, + { + "objectID": "about.html#core-skills---core-r-and-prenomics-were-created-to-introduce-the-fundamentals-of-the-command-line-and-to-help-learners-gain-confidence-in-their-programming-skills.", + "href": "about.html#core-skills---core-r-and-prenomics-were-created-to-introduce-the-fundamentals-of-the-command-line-and-to-help-learners-gain-confidence-in-their-programming-skills.", + "title": "About", + "section": "Core skills - Core R and Prenomics were created to introduce the fundamentals of the command line and to help learners gain confidence in their programming skills.", + "text": "Core skills - Core R and Prenomics were created to introduce the fundamentals of the command line and to help learners gain confidence in their programming skills." + }, + { + "objectID": "about.html#specialised-skills---learners-who-were-already-confident-with-their-command-line-abilities-were-encouraged-to-complete-genomics-and-metagenomics.-an-online-assessment-was-developed-for-learners-to-self-assess-their-level-of-knowledge-and-help-them-to-gauge-which-course-would-be-most-appropriate-for-them.", + "href": "about.html#specialised-skills---learners-who-were-already-confident-with-their-command-line-abilities-were-encouraged-to-complete-genomics-and-metagenomics.-an-online-assessment-was-developed-for-learners-to-self-assess-their-level-of-knowledge-and-help-them-to-gauge-which-course-would-be-most-appropriate-for-them.", + "title": "About", + "section": "Specialised skills - Learners who were already confident with their command line abilities were encouraged to complete Genomics and Metagenomics. An online assessment was developed for learners to self assess their level of knowledge and help them to gauge which course would be most appropriate for them.", + "text": "Specialised skills - Learners who were already confident with their command line abilities were encouraged to complete Genomics and Metagenomics. An online assessment was developed for learners to self assess their level of knowledge and help them to gauge which course would be most appropriate for them.\n\n\n\n\n\n\nNote\n\n\n\nThe only course which requires significant prior experience in programming is Automated Management of AWS Instances which is aimed at computing professionals and research software engineers." + }, + { + "objectID": "about.html#core-r", + "href": "about.html#core-r", + "title": "About", + "section": "Core R", + "text": "Core R\nThis short 2 hour course provides a whistle-stop tour of the R programming language and RStudio environment for total beginners. You will learn how to navigate RStudio, use the manual, import data and summarise/visualise it with a plot.\n\nGenomics\nGenomics is a practical, tutor-led course taking place over 4 half days or 2 full days (roughly twelve hours of content). It teaches data management and analytical skills using cloud resources for genomic research.\nTopics covered include:\n\nproject management for cloud genomics\nwriting shell scripts\nassessing read quality\ntrimming/filtering reads\nfinding sequence variants.\n\nA basic knowledge of the shell is required, which can be obtained by attending/self-studying the Prenomics course." + }, + { + "objectID": "about.html#metagenomics", + "href": "about.html#metagenomics", + "title": "About", + "section": "Metagenomics", + "text": "Metagenomics\nMetagenomics teaches data analysis for metagenomics projects. It runs asynchronously with a mixture of taught sessions, offline self-study and drop-in sessions.\nTopics covered include:\n\nan introduction to metagenomics and what it can be used for\nperforming quality control on long and short reads\nimproving your assembly with polishing\nbinning into species/metagenome-assembled genomes (MAGs)\ntaxonomic assignment and functional annotation\n\nNo prior knowledge of the shell is required as this course includes two sessions of Prenomics material." + }, + { + "objectID": "about.html#Statistically-Useful-Experimental-Design", + "href": "about.html#Statistically-Useful-Experimental-Design", + "title": "About", + "section": "Statistically Useful Experimental Design", + "text": "Statistically Useful Experimental Design\nThe workshop was developed to help researchers to:\n\nunderstand the issues underpinning good experimental design\nto ensure that reproducible techniques are used to produce data." + }, + { + "objectID": "about.html#create-aws", + "href": "about.html#create-aws", + "title": "About", + "section": "Create Your Own AWS Instance", + "text": "Create Your Own AWS Instance\nThis course shows you how to create and manage an Amazon Web Service instance like the ones used in all our courses, in order to:\n\nstudy course materials further\nperform more complex analyses on your own data." + }, + { + "objectID": "about.html#cloud-admin", + "href": "about.html#cloud-admin", + "title": "About", + "section": "Automated Management of AWS Instances", + "text": "Automated Management of AWS Instances\nAutomated Management of AWS Instances is aimed at experienced command line users who have an interest in deploying and managing cloud resources for training purposes.\nNo prior knowledge of AWS concepts or tools is needed but learners should have significant experience with the Unix terminal and programming with Bash." }, { "objectID": "blogs/UKRN_FAIR_workshop_oct22/index.html", diff --git a/self_study/Automated Management of AWS instances/index.html b/self_study/Automated Management of AWS instances/index.html index 94c637e..b40e4b8 100644 --- a/self_study/Automated Management of AWS instances/index.html +++ b/self_study/Automated Management of AWS instances/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study/Automated Management of Amazon Web Services (AWS) instances/index.html b/self_study/Automated Management of Amazon Web Services (AWS) instances/index.html index 94c637e..b40e4b8 100644 --- a/self_study/Automated Management of Amazon Web Services (AWS) instances/index.html +++ b/self_study/Automated Management of Amazon Web Services (AWS) instances/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study/Create Your Own AWS Instance/index.html b/self_study/Create Your Own AWS Instance/index.html index ae25b21..5138ee5 100644 --- a/self_study/Create Your Own AWS Instance/index.html +++ b/self_study/Create Your Own AWS Instance/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study/Genomics/index.html b/self_study/Genomics/index.html index caf7f16..b45cd7c 100644 --- a/self_study/Genomics/index.html +++ b/self_study/Genomics/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study/Metagenomics for Microbiologists/index.html b/self_study/Metagenomics for Microbiologists/index.html index 274ad16..7c0e940 100644 --- a/self_study/Metagenomics for Microbiologists/index.html +++ b/self_study/Metagenomics for Microbiologists/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study/Prenomics/index.html b/self_study/Prenomics/index.html index bf58440..4cfed50 100644 --- a/self_study/Prenomics/index.html +++ b/self_study/Prenomics/index.html @@ -2,7 +2,7 @@ - + diff --git a/self_study_courses.html b/self_study_courses.html index 2b94588..54458a9 100644 --- a/self_study_courses.html +++ b/self_study_courses.html @@ -2,7 +2,7 @@ - + diff --git a/sitemap.xml b/sitemap.xml index 1442a22..85eb1ef 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -2,190 +2,190 @@ https://cloud-span.github.io/cloud-span-quarto-site/index.html - 2024-07-18T13:27:26.342Z + 2024-07-18T21:00:37.343Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/NERC Metagenomics/index.html - 2024-07-18T13:27:26.382Z + 2024-07-18T21:00:37.383Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Genomics/index.html - 2024-07-18T13:27:26.378Z + 2024-07-18T21:00:37.379Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Code Retreat/index.html - 2024-07-18T13:27:26.374Z + 2024-07-18T21:00:37.375Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Automated Management of Amazon Web Services (AWS) instances/index.html - 2024-07-18T13:27:26.346Z + 2024-07-18T21:00:37.347Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Create Your Own AWS Instance/index.html - 2024-07-18T13:27:26.346Z + 2024-07-18T21:00:37.351Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Metagenomics for Microbiologists/index.html - 2024-07-18T13:27:26.354Z + 2024-07-18T21:00:37.359Z https://cloud-span.github.io/cloud-span-quarto-site/contact-us.html - 2024-07-18T13:27:26.266Z + 2024-07-18T21:00:37.267Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/ed-dash_training_jun22/index.html - 2024-07-18T13:27:26.178Z + 2024-07-18T21:00:37.179Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/course_feedback_feb23/index.html - 2024-07-18T13:27:26.178Z + 2024-07-18T21:00:37.179Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/R_intro_may23/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.171Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/scholarships_oct22/index.html - 2024-07-18T13:27:26.266Z + 2024-07-18T21:00:37.267Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/prenomics_summary_poster_jul22/index.html - 2024-07-18T13:27:26.262Z + 2024-07-18T21:00:37.263Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/supporting_learners_nov22/index.html - 2024-07-18T13:27:26.266Z + 2024-07-18T21:00:37.267Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/northern_bug_scholarships_jul22/index.html - 2024-07-18T13:27:26.258Z + 2024-07-18T21:00:37.263Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/NERC_funding_sep22/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/fair_at_cloudspan_jun22/index.html - 2024-07-18T13:27:26.182Z + 2024-07-18T21:00:37.187Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/Additional_funding_Dec23/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/oracle_fellow_apr23/index.html - 2024-07-18T13:27:26.258Z + 2024-07-18T21:00:37.263Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/env_omics_challenges_jul22/index.html - 2024-07-18T13:27:26.178Z + 2024-07-18T21:00:37.179Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/code_retreat_apr23/index.html - 2024-07-18T13:27:26.174Z + 2024-07-18T21:00:37.175Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming_courses.html - 2024-07-18T13:27:26.386Z + 2024-07-18T21:00:37.391Z https://cloud-span.github.io/cloud-span-quarto-site/blogs.html - 2024-07-18T13:27:26.162Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/self_study_courses.html - 2024-07-18T13:27:26.362Z + 2024-07-18T21:00:37.363Z https://cloud-span.github.io/cloud-span-quarto-site/cloud-span-aims.html - 2024-07-18T13:27:26.266Z + 2024-07-18T21:00:37.267Z https://cloud-span.github.io/cloud-span-quarto-site/about.html - 2024-07-18T13:27:26.162Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/UKRN_FAIR_workshop_oct22/index.html - 2024-07-18T13:27:26.170Z + 2024-07-18T21:00:37.171Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/Prenomics-Dec-2023/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.171Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/Join_the_team/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/challenges_solutions_aug22/index.html - 2024-07-18T13:27:26.170Z + 2024-07-18T21:00:37.171Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/genomics_self_study_may22/index.html - 2024-07-18T13:27:26.182Z + 2024-07-18T21:00:37.187Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/bioinformatics_meeting_careers_jun22/index.html - 2024-07-18T13:27:26.170Z + 2024-07-18T21:00:37.171Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/what_is_fair_may22/index.html - 2024-07-18T13:27:26.266Z + 2024-07-18T21:00:37.267Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/AWS_Management/index.html - 2024-07-18T13:27:26.166Z + 2024-07-18T21:00:37.167Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/northern_bug_dec22/index.html - 2024-07-18T13:27:26.222Z + 2024-07-18T21:00:37.223Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/prenomics_lowering_barriers_oct22/index.html - 2024-07-18T13:27:26.258Z + 2024-07-18T21:00:37.263Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/northern_bug_apr23/index.html - 2024-07-18T13:27:26.186Z + 2024-07-18T21:00:37.187Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/code_retreat_dec22/index.html - 2024-07-18T13:27:26.174Z + 2024-07-18T21:00:37.179Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/code_retreat_apr22/index.html - 2024-07-18T13:27:26.170Z + 2024-07-18T21:00:37.175Z https://cloud-span.github.io/cloud-span-quarto-site/blogs/genomics_reflection_dec21/index.html - 2024-07-18T13:27:26.182Z + 2024-07-18T21:00:37.187Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Prenomics/index.html - 2024-07-18T13:27:26.358Z + 2024-07-18T21:00:37.359Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Automated Management of AWS instances/index.html - 2024-07-18T13:27:26.342Z + 2024-07-18T21:00:37.347Z https://cloud-span.github.io/cloud-span-quarto-site/self_study/Genomics/index.html - 2024-07-18T13:27:26.354Z + 2024-07-18T21:00:37.359Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Prenomics/index.html - 2024-07-18T13:27:26.386Z + 2024-07-18T21:00:37.387Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/How to manage AWS Instances/index.html - 2024-07-18T13:27:26.382Z + 2024-07-18T21:00:37.383Z https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Core R/index.html - 2024-07-18T13:27:26.374Z + 2024-07-18T21:00:37.379Z https://cloud-span.github.io/cloud-span-quarto-site/DaSH.html - 2024-07-18T13:27:26.158Z + 2024-07-18T21:00:37.163Z diff --git a/upcoming/Code Retreat/index.html b/upcoming/Code Retreat/index.html index 0f27d2e..cb3d3f5 100644 --- a/upcoming/Code Retreat/index.html +++ b/upcoming/Code Retreat/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming/Core R/index.html b/upcoming/Core R/index.html index 8839e05..683bada 100644 --- a/upcoming/Core R/index.html +++ b/upcoming/Core R/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming/Genomics/index.html b/upcoming/Genomics/index.html index 9d6b211..e87e1ba 100644 --- a/upcoming/Genomics/index.html +++ b/upcoming/Genomics/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming/How to manage AWS Instances/index.html b/upcoming/How to manage AWS Instances/index.html index b2d66f8..acf085a 100644 --- a/upcoming/How to manage AWS Instances/index.html +++ b/upcoming/How to manage AWS Instances/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming/NERC Metagenomics/index.html b/upcoming/NERC Metagenomics/index.html index 4d7e0a5..f2627b7 100644 --- a/upcoming/NERC Metagenomics/index.html +++ b/upcoming/NERC Metagenomics/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming/Prenomics/index.html b/upcoming/Prenomics/index.html index 3d301af..3755660 100644 --- a/upcoming/Prenomics/index.html +++ b/upcoming/Prenomics/index.html @@ -2,7 +2,7 @@ - + diff --git a/upcoming_courses.html b/upcoming_courses.html index 80406ff..321dc46 100644 --- a/upcoming_courses.html +++ b/upcoming_courses.html @@ -2,7 +2,7 @@ - + @@ -259,7 +259,7 @@

Upcoming Courses