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Nov 30, 2022
75: Add beta factor to evaporation r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Co-authoured-by: `@LenkaNovak` `@kmdeck` Adds a beta factor to evaporation when surface condition is `ValuesOnly` or `Coefficients` to account for surface resistance. ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jan 11, 2023
78: use relative or absolute tolerance for obukhov length r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Try to fix #62 and ClimaAtmos [#1225](CliMA/ClimaAtmos.jl#1225) ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jan 12, 2023
79: fix an error in tolerance argument r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Fixes the argument order bug introduced in #78. Also slightly increase the relative tolerance. ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jan 12, 2023
80: Update patch version r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Update patch version to v0.5.1. ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jan 17, 2023
90: Make initial guess of l_mo dependent on stability regimes r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Closes #89 ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jan 19, 2023
91: Update minor version r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Mar 22, 2023
94: Change initial guess of L_MO to -1 r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Currently SurfaceFluxes breaks some of the EDMF cases in ClimaAtmos. I don't think it is a problem with SurfaceFluxes, but I would like to upgrade the dependencies in ClimaAtmos. Therefore I'm changing the initial guess of L_MO back to the default -1. cc `@akshaysridhar` ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Mar 22, 2023
95: Bump patch version r=szy21 a=szy21 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> ## Content <!--- specific tasks that are currently complete - Solution implemented --> <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: Zhaoyi Shen <[email protected]>
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Jul 18, 2023
103: Add Bonan plots to documentation r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add plots reproducing Figs 6.3(a),(b) from [Bonan (2019)](https://doi.org/10.1017/9781107339217.007) to existing documentation. <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [x] I have read and checked the items on the review checklist. Co-authored-by: gdecker1 <[email protected]>
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Aug 7, 2023
104: Added tests for GLSG21 Eq. 2 and Eq. 3 r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add edge case tests for [Gryanik (2021)](https://doi.org/10.1029/2021MS002590) Eq. 2 and Eq. 3 to existing test set. <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [x] I have read and checked the items on the review checklist. Co-authored-by: gdecker1 <[email protected]>
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Aug 14, 2023
101: Implementation of Holtslag SCFs r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add stability correction functions from Holtslag and De Bruin (1988) into ```UniversalFunctions.jl```. Here is a [visual tabulation](https://docs.google.com/document/d/1T2krlLtTR-WMaMpYOvUqlcOWm2GK3-P5tluCzHc9ibg/edit?usp=sharing) of the equations in ```UniversalFunctions.jl``` for ease of reference. ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> - [x] Implement Holtslag SCF (phi) momentum and heat functions - [x] Implement Holtslag integrated-SCF (psi) momentum and heat functions - [x] Implement Holtslag volume-averaged integrated-SCF (Psi) momentum and heat functions - [x] Add Holtslag to docs - [x] Add Holtslag-specific asymptotic tests (phi equations diverge to infinity) <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [x] I have read and checked the items on the review checklist. Co-authored-by: gdecker1 <[email protected]>
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Aug 16, 2023
107: Add Comprehensive Set of Universal Functions to Docs r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add the full set of universal functions implemented in ```UniversalFunctions.jl``` to existing docs, reproducing [this visual tabulation](https://docs.google.com/document/d/1T2krlLtTR-WMaMpYOvUqlcOWm2GK3-P5tluCzHc9ibg/edit?usp=sharing). ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> - [x] Add [Businger (1971)](https://doi.org/10.1175/1520-0469(1971)028%3C0181:FPRITA%3E2.0.CO;2) universal functions to docs - [x] Add [Grachev (2007)](https://doi.org/10.1007/s10546-007-9177-6) universal functions to docs - [x] Add [Gryanik (2021)](https://doi.org/10.1175/JAS-D-19-0255.1) universal functions to docs - [x] Add [Cheng (2005)](https://doi.org/10.1007/s10546-004-1425-4) universal functions to docs #100 - [x] Add [Holtslag (1988)](https://doi.org/10.1175/JAS-D-19-0255.1) universal functions to docs #101 - [x] Add [Beljaars (1991)](https://doi.org/10.1175/1520-0450(1991)030%3C0327:FPOLSF%3E2.0.CO;2) universal functions to docs #102 - [ ] Add commentary for each universal function <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [ ] I have read and checked the items on the review checklist. Co-authored-by: gdecker1 <[email protected]>
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Aug 18, 2023
100: Implementation of Cheng SCFs r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add stability correction functions from Cheng and Brutsaert (2005) into ```UniversalFunctions.jl```. Here is a [visual tabulation](https://docs.google.com/document/d/1T2krlLtTR-WMaMpYOvUqlcOWm2GK3-P5tluCzHc9ibg/edit?usp=sharing) of the equations in ```UniversalFunctions.jl``` for ease of reference. ## To-do - [x] Implement Cheng SCF (phi) momentum and heat functions - [x] Implement Cheng integrated-SCF (psi) momentum and heat functions - [x] Implement Cheng volume-averaged integrated-SCF (Psi) momentum and heat functions (Add error message as of now; complete implementation requires hypergeometric function) - [x] Add Cheng to docs - [x] Add Cheng-specific asymptotic tests <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [x] I have read and checked the items on the review checklist. Co-authored-by: gdecker1 <[email protected]>
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Aug 18, 2023
102: Implementation of Beljaars SCFs r=akshaysridhar a=gdecker1 <!--- THESE LINES ARE COMMENTED --> ## Purpose <!--- One sentence to describe the purpose of this PR, refer to any linked issues: #14 -- this will link to issue 14 Closes #2 -- this will automatically close issue 2 on PR merge --> Add stability correction functions from Beljaars and Holtslag (1991) into ```UniversalFunctions.jl```. Here is a [visual tabulation](https://docs.google.com/document/d/1T2krlLtTR-WMaMpYOvUqlcOWm2GK3-P5tluCzHc9ibg/edit?usp=sharing) of the equations in ```UniversalFunctions.jl``` for ease of reference. ## To-do <!--- list of proposed tasks in the PR, move to "Content" on completion - Proposed task --> - [x] Implement Beljaars SCF (phi) momentum and heat functions - [x] Implement Beljaars integrated-SCF (psi) momentum and heat functions - [x] Implement Beljaars volume-averaged integrated-SCF (Psi) momentum and heat functions - [x] Add Beljaars to docs - [x] Add Beljaars-specific asymptotic tests (phi equations diverge to infinity) <!--- Review checklist I have: - followed the codebase contribution guide: https://clima.github.io/ClimateMachine.jl/latest/Contributing/ - followed the style guide: https://clima.github.io/ClimateMachine.jl/latest/DevDocs/CodeStyle/ - followed the documentation policy: https://github.com/CliMA/policies/wiki/Documentation-Policy - checked that this PR does not duplicate an open PR. In the Content, I have included - relevant unit tests, and integration tests, - appropriate docstrings on all functions, structs, and modules, and included relevant documentation. --> ---- - [x] I have read and checked the items on the review checklist. Co-authored-by: akshaysridhar <[email protected]>
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