From 4b410f11a5c4eced37cda56a47add088423e6020 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Mon, 21 Oct 2024 08:41:10 -0700 Subject: [PATCH 1/7] Use higher resolution land-sea mask As added in https://github.com/CliMA/ClimaArtifacts/pull/49 60 arcseconds is already pretty high resolution --- NEWS.md | 14 ++++++-- artifacts/artifact_funcs.jl | 36 ------------------- artifacts/download_artifacts.jl | 7 ---- experiments/ClimaEarth/Artifacts.toml | 10 ++++++ experiments/ClimaEarth/run_amip.jl | 11 ++++-- .../ClimaEarth/run_cloudy_slabplanet.jl | 25 +++++++------ 6 files changed, 43 insertions(+), 60 deletions(-) delete mode 100644 artifacts/artifact_funcs.jl diff --git a/NEWS.md b/NEWS.md index 0ecc3404ba..325b5ebf48 100644 --- a/NEWS.md +++ b/NEWS.md @@ -13,8 +13,19 @@ low-resolution version of such files is automatically downloaded when a higher-resolution version is not available. Please, refer to [ClimaArtifacts](https://github.com/CliMA/ClimaArtifacts) for more information. +### A higher resolution land-sea mask is now used and automatically downloaded - PR [#1006](https://github.com/CliMA/ClimaCoupler.jl/pull/1006) + +A 60 arcsecond land-sea mask constructed from topographic data is now used. +Topographic data is automatically downloaded and a land-sea mask is constructed +by identifying where elevation is greater than 0. Note, this can lead to +misidentification of ocean in some areas of the globe that are inland but below +sea level (Dead Sea, Death Valley, ...). + + + ### Code cleanup #### Remove ClimaCoupler.Diagnostics module - PR [#953](https://github.com/CliMA/ClimaCoupler.jl/pull/953) + The ClimaCoupler Diagnostics module had become redundant with ClimaDiagnostics.jl, a package designed to provide robust diagnostics across the CliMA ecosystem. @@ -37,5 +48,4 @@ This PR follows directly from the Diagnostics module removal. ### Maintenance - Update to JuliaFormatter v2. PR [#1024](https://github.com/CliMA/ClimaCoupler.jl/pull/1024) -- Update CI to use Julia v1.11. Introduce Manifest files for -Julia 1.11, in addition to the existing generic Manifests. PR [#1026](https://github.com/CliMA/ClimaCoupler.jl/pull/1026) +- Update CI to use Julia v1.11. Introduce Manifest files for Julia 1.11, in addition to the existing generic Manifests. PR [#1026](https://github.com/CliMA/ClimaCoupler.jl/pull/1026) diff --git a/artifacts/artifact_funcs.jl b/artifacts/artifact_funcs.jl deleted file mode 100644 index 96164d8d7a..0000000000 --- a/artifacts/artifact_funcs.jl +++ /dev/null @@ -1,36 +0,0 @@ -import ArtifactWrappers as AW - -function mask_dataset_path() - mask_dataset = AW.ArtifactWrapper( - @__DIR__, - "land_mask", - AW.ArtifactFile[AW.ArtifactFile( - url = "https://caltech.box.com/shared/static/vubmq84nhvbgdqayezguf3i1w6nqtwvu.ncc", - filename = "seamask.nc", - ),], - ) - return AW.get_data_folder(mask_dataset) -end - -""" - artifact_data(datapath_full, filename) - -Returns input dataset at datapath_full -""" -function artifact_data(datapath_full, filename) - datafile_truncated = joinpath(datapath_full, string(lowercase(filename), ".nc")) - return datafile_truncated -end - -""" - artifact_data(datapath_full, filename, varname, datapath_trunc, date0, t_start, t_end, comms_ctx) - -Truncates given data set, and constructs a new dataset containing only -the dates needed and stores it in datapath_trunc -""" -function artifact_data(datapath_full, filename, varname, datapath_trunc, date0, t_start, t_end, comms_ctx) - datafile = joinpath(datapath_full, string(lowercase(filename), ".nc")) - datafile_truncated = - Regridder.truncate_dataset(datafile, filename, varname, datapath_trunc, date0, t_start, t_end, comms_ctx) - return datafile_truncated -end diff --git a/artifacts/download_artifacts.jl b/artifacts/download_artifacts.jl index a9412cbfe3..7c2a0811ee 100644 --- a/artifacts/download_artifacts.jl +++ b/artifacts/download_artifacts.jl @@ -18,10 +18,3 @@ end include(joinpath(@__DIR__, "artifact_funcs.jl")) - -# Trigger download if data doesn't exist locally -function trigger_download() - @info "mask dataset path: `$(mask_dataset_path())`" - return nothing -end -trigger_download() diff --git a/experiments/ClimaEarth/Artifacts.toml b/experiments/ClimaEarth/Artifacts.toml index c8bb5619bf..86d620b8ce 100644 --- a/experiments/ClimaEarth/Artifacts.toml +++ b/experiments/ClimaEarth/Artifacts.toml @@ -37,3 +37,13 @@ git-tree-sha1 = "9c3bd05b68e820fceb43d130ce6b4e86ce788e4e" [[co2_dataset.download]] sha256 = "46923ec3e1f9028a11899c47e6b13d675d84daa9db2f37351a19ec9187f87865" url = "https://caltech.box.com/shared/static/fuwajscgyblccy8y9aq01d0pgy91gwut.gz" + +[earth_orography_30arcseconds] +git-tree-sha1 = "03dd08fcbf363ed055a176dd7adefb60ff1c3493" + +[earth_orography_60arcseconds] +git-tree-sha1 = "fe19d8dbe7a18ff39588e1f718014b0479d9c0f7" + + [[earth_orography_60arcseconds.download]] + sha256 = "eca66c0701d1c2b9e271742314915ffbf4a0fae92709df611c323f38e019966e" + url = "https://caltech.box.com/shared/static/4asrxcgl6xsgenfcug9p0wkkyhtqilgk.gz" diff --git a/experiments/ClimaEarth/run_amip.jl b/experiments/ClimaEarth/run_amip.jl index eca06c286c..2be2d10adb 100644 --- a/experiments/ClimaEarth/run_amip.jl +++ b/experiments/ClimaEarth/run_amip.jl @@ -228,7 +228,8 @@ catch error ) end co2_data = joinpath(@clima_artifact("co2_dataset", comms_ctx), "co2_mm_mlo.txt") -land_mask_data = joinpath(mask_dataset_path(), "seamask.nc") +land_mask_data = + joinpath(@clima_artifact("earth_orography_60arcseconds", comms_ctx), "ETOPO_2022_v1_60s_N90W180_surface.nc") #= ## Component Model Initialization @@ -272,7 +273,13 @@ Note that land-sea area fraction is different to the land-sea mask, which is a b (masks are used internally by the coupler to indicate passive cells that are not populated by a given component model). =# -land_area_fraction = SpaceVaryingInput(land_mask_data, "LSMASK", boundary_space) +# Preprocess the file to be 1s and 0s before remapping into onto the grid +land_area_fraction = SpaceVaryingInput( + land_mask_data, + "z", + boundary_space, + file_reader_kwargs = (; preprocess_func = (data) -> data >= 0), +) if !mono_surface land_area_fraction = Regridder.binary_mask.(land_area_fraction) end diff --git a/experiments/ClimaEarth/run_cloudy_slabplanet.jl b/experiments/ClimaEarth/run_cloudy_slabplanet.jl index 4c00993eae..327fb6f956 100644 --- a/experiments/ClimaEarth/run_cloudy_slabplanet.jl +++ b/experiments/ClimaEarth/run_cloudy_slabplanet.jl @@ -27,6 +27,10 @@ import ClimaCoupler import ClimaCoupler: ConservationChecker, Checkpointer, FieldExchanger, FluxCalculator, Interfacer, Regridder, TimeManager, Utilities +import ClimaUtilities.ClimaArtifacts: @clima_artifact +import ClimaUtilities.SpaceVaryingInputs: SpaceVaryingInput +import Interpolations + pkg_dir = pkgdir(ClimaCoupler) #= @@ -157,7 +161,8 @@ dir_paths = setup_output_dirs(output_dir = coupler_output_dir, comms_ctx = comms ## Data File Paths =# include(joinpath(pkgdir(ClimaCoupler), "artifacts", "artifact_funcs.jl")) -land_mask_data = artifact_data(mask_dataset_path(), "seamask") +land_mask_data = + joinpath(@clima_artifact("earth_orography_60arcseconds", comms_ctx), "ETOPO_2022_v1_60s_N90W180_surface.nc") #= ## Component Model Initialization @@ -191,18 +196,12 @@ This is a static field that contains the area fraction of land and sea, ranging Note that land-sea area fraction is different to the land-sea mask, which is a binary field (masks are used internally by the coupler to indicate passive cells that are not populated by a given component model). =# -land_area_fraction = - FT.( - Regridder.land_fraction( - FT, - dir_paths.regrid, - comms_ctx, - land_mask_data, - "LSMASK", - boundary_space, - mono = false, - ), - ) +land_area_fraction = SpaceVaryingInput( + land_mask_data, + "z", + boundary_space, + file_reader_kwargs = (; preprocess_func = (data) -> data >= 0), +) #= ### Surface Model: Bucket Land and Slab Ocean From bee7658517b8a7dc9dc0eddc419dd53d817d4d33 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Thu, 17 Oct 2024 11:34:14 -0700 Subject: [PATCH 2/7] Remove ArtifactWrappers, bump dependencies --- artifacts/Manifest-v1.11.toml | 1556 ++++++++++++++++++++ experiments/ClimaEarth/Manifest-v1.11.toml | 4 +- experiments/ClimaEarth/Manifest.toml | 2 +- experiments/ClimaEarth/Project.toml | 2 - perf/Manifest.toml | 326 ++-- perf/Project.toml | 2 - test/Project.toml | 2 - 7 files changed, 1671 insertions(+), 223 deletions(-) create mode 100644 artifacts/Manifest-v1.11.toml diff --git a/artifacts/Manifest-v1.11.toml b/artifacts/Manifest-v1.11.toml new file mode 100644 index 0000000000..2dc60491de --- /dev/null +++ b/artifacts/Manifest-v1.11.toml @@ -0,0 +1,1556 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.11.0" +manifest_format = "2.0" +project_hash = "7bf244a49dc56921c8c55170d67cb509840b5f7a" + +[[deps.ADTypes]] +git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.9.0" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", 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"3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+1" + +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.1.2+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.11.0+0" + +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.11.1+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.59.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/experiments/ClimaEarth/Manifest-v1.11.toml b/experiments/ClimaEarth/Manifest-v1.11.toml index 52506c9a9d..d4aae81dd8 100644 --- a/experiments/ClimaEarth/Manifest-v1.11.toml +++ b/experiments/ClimaEarth/Manifest-v1.11.toml @@ -1,8 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.11.1" +julia_version = "1.11.0" manifest_format = "2.0" -project_hash = "9e067c01eff1d3e9d90940fc842d1bd69aeb1be4" +project_hash = "5649495ebeefc92d7b9428a7f4ac45942550b0ca" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" diff --git a/experiments/ClimaEarth/Manifest.toml b/experiments/ClimaEarth/Manifest.toml index 9b5dfd4a40..ad855d1119 100644 --- a/experiments/ClimaEarth/Manifest.toml +++ b/experiments/ClimaEarth/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "ef236430f0314c4267948fabeb1aaedf2d54cb45" +project_hash = "4a006d2b7db06fc9ece2310e0cd50b83c36993fe" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" diff --git a/experiments/ClimaEarth/Project.toml b/experiments/ClimaEarth/Project.toml index 2f7adc7eae..915186d24e 100644 --- a/experiments/ClimaEarth/Project.toml +++ b/experiments/ClimaEarth/Project.toml @@ -1,6 +1,5 @@ [deps] ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a" Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" ClimaAnalysis = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" @@ -33,7 +32,6 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" [compat] ArgParse = "1.1" -ArtifactWrappers = "0.2" ClimaAnalysis = "0.5.10" ClimaAtmos = "0.27" ClimaCorePlots = "0.2" diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 5e3d0ce542..b28b66b85c 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "c46d21317c946ec9f0ded6af1ab8d6a481f84053" +project_hash = "f105a09121789313403058a5b0c33f057e3f0748" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" @@ -57,9 +57,9 @@ version = "0.1.38" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.1.1" +version = "4.0.4" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -124,9 +124,9 @@ version = "7.16.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528" +git-tree-sha1 = "0dd7edaff278e346eb0ca07a7e75c9438408a3ce" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.4" +version = "1.10.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -171,12 +171,6 @@ git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" -[[deps.BFloat16s]] -deps = ["LinearAlgebra", "Printf", "Random", "Test"] -git-tree-sha1 = "2c7cc21e8678eff479978a0a2ef5ce2f51b63dff" -uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" -version = "0.5.0" - [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579" @@ -255,36 +249,6 @@ git-tree-sha1 = "e329286945d0cfc04456972ea732551869af1cfc" uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" version = "1.0.1+0" -[[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "cdbdca28f19c2c7fcf34ffb48bfdaca404dcd18a" -uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.5.0" -weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] - - [deps.CUDA.extensions] - ChainRulesCoreExt = "ChainRulesCore" - EnzymeCoreExt = "EnzymeCore" - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ccd1e54610c222fadfd4737dac66bff786f63656" -uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.10.3+0" - -[[deps.CUDA_Runtime_Discovery]] -deps = ["Libdl"] -git-tree-sha1 = "33576c7c1b2500f8e7e6baa082e04563203b3a45" -uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.5" - -[[deps.CUDA_Runtime_jll]] -deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e43727b237b2879a34391eeb81887699a26f8f2f" -uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.15.3+0" - [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] git-tree-sha1 = "7b6ad8c35f4bc3bca8eb78127c8b99719506a5fb" @@ -293,9 +257,9 @@ version = "1.1.0" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "fbfdb7cbe17bd14b60646c14c27a16e5038cde54" +git-tree-sha1 = "7947d2b61995eda7d5ca50c697b12bb578b918e5" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.12.15" +version = "0.12.14" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -315,9 +279,9 @@ weakdeps = ["SparseArrays"] [[deps.ClimaAnalysis]] deps = ["Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"] -git-tree-sha1 = "e746377ad9eb712b86ec60d4a047d933e71253b9" +git-tree-sha1 = "1f6c4859eafc66f1b6df4932bd7040747581d816" uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -version = "0.5.11" +version = "0.5.10" weakdeps = ["GeoMakie", "Makie"] [deps.ClimaAnalysis.extensions] @@ -325,10 +289,10 @@ weakdeps = ["GeoMakie", "Makie"] ClimaAnalysisMakieExt = "Makie" [[deps.ClimaAtmos]] -deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"] -git-tree-sha1 = "bb262a5b9bb9ec9434895c84f364be2101679ef5" +deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"] +git-tree-sha1 = "2da5e63fdcad0f252328079dae31e2cb2a42e9dd" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.27.8" +version = "0.27.7" [[deps.ClimaComms]] git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef" @@ -348,12 +312,15 @@ deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", " git-tree-sha1 = "c5110de141034f18511a9d09b409f9dd568b83ee" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" version = "0.14.19" -weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] ClimaCoreCUDAExt = "CUDA" KrylovExt = "Krylov" + [deps.ClimaCore.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" + [[deps.ClimaCorePlots]] deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] git-tree-sha1 = "4fc0c2a0845fc34a8d6c0e0a276d62a0d4e50286" @@ -367,22 +334,22 @@ uuid = "d934ef94-cdd4-4710-83d6-720549644b70" version = "0.3.18" [[deps.ClimaCoupler]] -deps = ["CUDA", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "DocStringExtensions", "JLD2", "NCDatasets", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "Thermodynamics"] -git-tree-sha1 = "aedca93b72b07f57ceb4f399a7023c430040e009" +deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] +path = ".." uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.1" [[deps.ClimaDiagnostics]] deps = ["Accessors", "ClimaComms", "ClimaCore", "Dates", "NCDatasets", "SciMLBase"] -git-tree-sha1 = "ace174fe5e4ae04c50a7835683baecd92e49c0d4" +git-tree-sha1 = "205961865d827825c2f5da0a18a605245cfec95e" uuid = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f" -version = "0.2.10" +version = "0.2.8" [[deps.ClimaLand]] deps = ["ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaUtilities", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -git-tree-sha1 = "df7f42aeb56eeb3c80b4fed814e0048b24447865" +git-tree-sha1 = "2288733338daca092d26335f5ac46fc5d23c8fa3" uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -version = "0.15.4" +version = "0.15.3" [deps.ClimaLand.extensions] CreateParametersExt = "ClimaParams" @@ -400,9 +367,9 @@ version = "0.15.4" [[deps.ClimaParams]] deps = ["TOML"] -git-tree-sha1 = "489c5655993c62fb34293908a6b0877e32f183ee" +git-tree-sha1 = "ca82603622e2df9dbf14716e43589b76e9705840" uuid = "5c42b081-d73a-476f-9059-fd94b934656c" -version = "0.10.16" +version = "0.10.15" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] @@ -422,10 +389,9 @@ version = "0.7.38" [[deps.ClimaUtilities]] deps = ["Artifacts", "Dates"] -git-tree-sha1 = "7e024b52c3a6713680665b3cc9f6cb9b872db357" +git-tree-sha1 = "24bd6d5066404af09215c372d0ffea56ed849206" uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" -version = "0.1.17" -weakdeps = ["Adapt", "CUDA", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Interpolations", "NCDatasets"] +version = "0.1.15" [deps.ClimaUtilities.extensions] ClimaUtilitiesClimaCommsCUDAExt = ["ClimaComms", "CUDA"] @@ -436,6 +402,15 @@ weakdeps = ["Adapt", "CUDA", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", ClimaUtilitiesClimaCoreTempestRemapExt = "ClimaCoreTempestRemap" ClimaUtilitiesNCDatasetsExt = "NCDatasets" + [deps.ClimaUtilities.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" + ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" + ClimaCoreTempestRemap = "d934ef94-cdd4-4710-83d6-720549644b70" + Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" + NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" + [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" @@ -469,9 +444,9 @@ version = "0.4.0" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "13951eb68769ad1cd460cdb2e64e5e95f1bf123d" +git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.27.0" +version = "3.26.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -596,12 +571,6 @@ git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.7.0" - [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" @@ -681,9 +650,9 @@ version = "1.15.1" [[deps.DiskArrays]] deps = ["LRUCache", "OffsetArrays"] -git-tree-sha1 = "e0e89a60637a62d13aa2107f0acd169b9b9b77e7" +git-tree-sha1 = "ef25c513cad08d7ebbed158c91768ae32f308336" uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" -version = "0.4.6" +version = "0.3.23" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -885,9 +854,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "a9ce73d3c827adab2d70bf168aaece8cce196898" +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.37" +version = "0.10.36" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -907,9 +876,9 @@ version = "2.13.2+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] -git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c" +git-tree-sha1 = "2493cdfd0740015955a8e46de4ef28f49460d8bc" uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" -version = "0.10.4" +version = "0.10.3" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -943,24 +912,12 @@ deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" version = "6.2.1+6" -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.3.1" - [[deps.GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" -[[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "1d6f290a5eb1201cd63574fbc4440c788d5cb38f" -uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.27.8" - [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] git-tree-sha1 = "ee28ddcd5517d54e417182fec3886e7412d3926f" @@ -1050,12 +1007,6 @@ git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" -[[deps.Giflib_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0224cce99284d997f6880a42ef715a37c99338d1" -uuid = "59f7168a-df46-5410-90c8-f2779963d0ec" -version = "5.2.2+0" - [[deps.GilbertCurves]] git-tree-sha1 = "3e076ca96e34a47e98a46657b2bec2655a366d80" uuid = "88fa7841-ef32-4516-bb70-c6ec135699d9" @@ -1127,9 +1078,9 @@ version = "1.14.2+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "bc3f416a965ae61968c20d0ad867556367f2817d" +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.9" +version = "1.10.8" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1173,10 +1124,10 @@ uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" version = "0.10.2" [[deps.ImageIO]] -deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs", "WebP"] -git-tree-sha1 = "696144904b76e1ca433b886b4e7edd067d76cbf7" +deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] +git-tree-sha1 = "437abb322a41d527c197fa800455f79d414f0a3c" uuid = "82e4d734-157c-48bb-816b-45c225c6df19" -version = "0.6.9" +version = "0.6.8" [[deps.ImageMetadata]] deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"] @@ -1200,19 +1151,6 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" -[[deps.InlineStrings]] -git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.2" - - [deps.InlineStrings.extensions] - ArrowTypesExt = "ArrowTypes" - ParsersExt = "Parsers" - - [deps.InlineStrings.weakdeps] - ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" - Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" - [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] git-tree-sha1 = "29e10cf6320739afe5a2b17e9c854a386fef7acc" @@ -1270,11 +1208,6 @@ weakdeps = ["Dates", "Test"] InverseFunctionsDatesExt = "Dates" InverseFunctionsTestExt = "Test" -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -1298,9 +1231,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28" +git-tree-sha1 = "b464b9b461ee989b435a689a4f7d870b68d467ed" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.53" +version = "0.5.6" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1352,9 +1285,9 @@ version = "0.2.1+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "e73a077abc7fe798fe940deabe30ef6c66bdde52" +git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.29" +version = "0.9.28" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1370,9 +1303,9 @@ version = "0.6.9" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "4f20a2df85a9e5d55c9e84634bbf808ed038cabd" +git-tree-sha1 = "71dd823bf0a5aaa8264e1143b96a0baa631f4ce0" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.8" +version = "0.9.7" [[deps.KrylovKit]] deps = ["GPUArraysCore", "LinearAlgebra", "PackageExtensionCompat", "Printf", "VectorInterface"] @@ -1397,26 +1330,23 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "4.0.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.1.3" -weakdeps = ["BFloat16s"] +version = "9.1.2" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" version = "0.0.34+0" -[[deps.LLVMLoopInfo]] -git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" -uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" -version = "1.0.0" - [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" @@ -1509,9 +1439,9 @@ version = "3.2.2+1" [[deps.Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.11.0+0" +version = "1.8.11+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] @@ -1521,15 +1451,15 @@ version = "1.6.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6" +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.50.0+0" +version = "1.49.0+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+1" +version = "1.17.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1596,9 +1526,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.1.0" +version = "1.0.3" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1642,10 +1572,10 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "f7907907eb914138cc9e9ee66ab46f7a9efac8e8" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "3df66da15ba7b37b34f6557b7e1c95a3ff5c670b" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.21.15" +version = "0.21.14" [[deps.MakieCore]] deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] @@ -1669,9 +1599,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] -git-tree-sha1 = "f45c8916e8385976e1ccd055c9874560c257ab13" +git-tree-sha1 = "e1641f32ae592e415e3dbae7f4a188b5316d4b62" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" -version = "0.6.2" +version = "0.6.1" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -1720,19 +1650,22 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultiBroadcastFusion]] -git-tree-sha1 = "4157ffb36526a275f644a3fbe378850e5eb1b470" +git-tree-sha1 = "c8c2e7161cff6428b46318c89938b52c34ec6661" uuid = "c3c07f87-98de-43f2-a76f-835b330b2cbb" -version = "0.3.3" -weakdeps = ["Adapt", "CUDA"] +version = "0.3.2" [deps.MultiBroadcastFusion.extensions] MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"] + [deps.MultiBroadcastFusion.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "2c9dc92001ac06d432f363f37ff5552954d9947c" +git-tree-sha1 = "77df6d3708ec0eb3441551e1f20f7503b37c2393" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.14.6" +version = "0.14.5" [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] @@ -1964,15 +1897,15 @@ version = "0.3.3" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" +git-tree-sha1 = "6e55c6841ce3411ccb3457ee52fc48cb698d6fb0" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.3.0" +version = "3.2.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" +git-tree-sha1 = "650a022b2ce86c7dcfbdecf00f78afeeb20e5655" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.3" +version = "1.4.2" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -2011,12 +1944,6 @@ git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - [[deps.Poppler_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "JpegTurbo_jll", "LibCURL_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "libpng_jll"] git-tree-sha1 = "7dbfb7f61c3aa5def7b7dad3fa344c1c2858a83b" @@ -2135,28 +2062,19 @@ deps = ["Adapt", "Artifacts", "ClimaComms", "DocStringExtensions", "Random"] git-tree-sha1 = "7a79ddde89bf2082d13fbf2f80428e0439e15128" uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" version = "0.19.1" -weakdeps = ["CUDA", "ClimaParams"] [deps.RRTMGP.extensions] CreateParametersExt = "ClimaParams" RRTMGPCUDAExt = "CUDA" + [deps.RRTMGP.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random"] -git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.6.0" - [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" @@ -2186,9 +2104,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "6f4dca5fd8e97087a76b7ab8384d1c3086ace0b7" +git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.3" +version = "3.27.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2279,9 +2197,9 @@ version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7" +git-tree-sha1 = "26fea1911818cd480400f1a2b7f6b32c3cc3836a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.58.0" +version = "2.56.4" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2304,9 +2222,9 @@ version = "2.58.0" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" +git-tree-sha1 = "ef388ca9e4921ec5614ce714f8aa59a5cd33d867" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.12" +version = "0.3.11" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2325,12 +2243,6 @@ git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.2.1" -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "d0553ce4031a081cc42387a9b9c8441b7d99f32d" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.7" - [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2445,9 +2357,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" +git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.8" +version = "1.9.7" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2535,9 +2447,9 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "89c701c87f378ce95e7ddbcd69b8f1106ba8b968" +git-tree-sha1 = "aee530bde85cd41374273568cb649e72d82921e7" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.11.0" +version = "0.12.0" weakdeps = ["ClimaParams"] [deps.SurfaceFluxes.extensions] @@ -2545,9 +2457,9 @@ weakdeps = ["ClimaParams"] [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911" +git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.34" +version = "0.3.33" [[deps.TOML]] deps = ["Dates"] @@ -2573,15 +2485,13 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423" +git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.17.8" -weakdeps = ["IntervalArithmetic", "JLD2", "RecursiveArrayTools", "StaticArrays"] +version = "0.17.3" +weakdeps = ["IntervalArithmetic", "StaticArrays"] [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" - TaylorSeriesJLD2Ext = "JLD2" - TaylorSeriesRATExt = "RecursiveArrayTools" TaylorSeriesSAExt = "StaticArrays" [[deps.TempestRemap_jll]] @@ -2623,9 +2533,9 @@ version = "0.5.2" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "6ee0c220d0aecad18792c277ae358129cc50a475" +git-tree-sha1 = "38f139cc4abf345dd4f22286ec000728d5e8e097" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.0" +version = "0.10.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2701,9 +2611,9 @@ uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" version = "0.1.5" [[deps.UnrolledUtilities]] -git-tree-sha1 = "5caf11dfadeee25daafa7caabb3f252a977ffe72" +git-tree-sha1 = "1244bd810bfd53c539ef5463b01dd9b808c2e5da" uuid = "0fe1646c-419e-43be-ac14-22321958931b" -version = "0.1.6" +version = "0.1.5" weakdeps = ["StaticArrays"] [deps.UnrolledUtilities.extensions] @@ -2749,12 +2659,6 @@ git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" version = "1.31.0+0" -[[deps.WebP]] -deps = ["CEnum", "ColorTypes", "FileIO", "FixedPointNumbers", "ImageCore", "libwebp_jll"] -git-tree-sha1 = "f1f6d497ff84039deeb37f264396dac0c2250497" -uuid = "e3aaa7dc-3e4b-44e0-be63-ffb868ccd7c1" -version = "0.1.2" - [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" @@ -2763,9 +2667,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7" +git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.4+0" +version = "2.13.3+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -2775,9 +2679,9 @@ version = "1.1.41+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.3+0" +version = "5.4.6+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3029,12 +2933,6 @@ git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+2" -[[deps.libwebp_jll]] -deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"] -git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94" -uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" -version = "1.4.0+0" - [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" diff --git a/perf/Project.toml b/perf/Project.toml index 176566ad17..d8688a832d 100644 --- a/perf/Project.toml +++ b/perf/Project.toml @@ -1,6 +1,5 @@ [deps] ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a" Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" ClimaAnalysis = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" @@ -36,7 +35,6 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" [compat] ArgParse = "1.1" -ArtifactWrappers = "0.2" ClimaAnalysis = "0.5.4" ClimaAtmos = "0.27" ClimaCorePlots = "0.2" diff --git a/test/Project.toml b/test/Project.toml index 28a7373c74..7f88473cac 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -2,7 +2,6 @@ Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a" Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" ClimaAnalysis = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" @@ -38,7 +37,6 @@ Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" [compat] Aqua = "0.8" -ArtifactWrappers = "0.2" ClimaAtmos = "0.27" ClimaLand = "0.14, 0.15" ClimaParams = "0.10" From c7cea01ffd05a4258543c3ad5e5e2bafce404643 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Tue, 22 Oct 2024 10:07:56 -0700 Subject: [PATCH 3/7] Remove artifacts folder The only artifact that might be needed is ETOPO for ClimaAtmos, but that should go away soon --- .buildkite/amip/pipeline.yml | 3 - .buildkite/benchmarks/pipeline.yml | 4 - .buildkite/hierarchies/pipeline.yml | 3 - .buildkite/longruns/pipeline.yml | 12 - .buildkite/nightly/pipeline.yml | 3 - .buildkite/pipeline.yml | 3 - artifacts/Artifacts.toml | 8 - artifacts/Manifest-v1.11.toml | 1556 ----------------- artifacts/Project.toml | 5 - artifacts/download_artifacts.jl | 20 - experiments/ClimaEarth/run_amip.jl | 4 - .../ClimaEarth/run_cloudy_slabplanet.jl | 1 - test/mpi_tests/local_checks.sh | 13 +- 13 files changed, 4 insertions(+), 1631 deletions(-) delete mode 100644 artifacts/Artifacts.toml delete mode 100644 artifacts/Manifest-v1.11.toml delete mode 100644 artifacts/Project.toml delete mode 100644 artifacts/download_artifacts.jl diff --git a/.buildkite/amip/pipeline.yml b/.buildkite/amip/pipeline.yml index b417d72fa8..2c4b3d96dc 100644 --- a/.buildkite/amip/pipeline.yml +++ b/.buildkite/amip/pipeline.yml @@ -24,9 +24,6 @@ steps: - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=experiments/ClimaEarth/ artifacts/download_artifacts.jl" - agents: slurm_gpus: 1 slurm_cpus_per_task: 8 diff --git a/.buildkite/benchmarks/pipeline.yml b/.buildkite/benchmarks/pipeline.yml index be25e0f445..b05f63cc02 100644 --- a/.buildkite/benchmarks/pipeline.yml +++ b/.buildkite/benchmarks/pipeline.yml @@ -27,10 +27,6 @@ steps: - "julia --project=test/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project=test/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=test/ -e 'using Pkg; Pkg.status()'" - - - echo "--- Download artifacts" - - "julia --project=experiments/ClimaEarth artifacts/download_artifacts.jl" - agents: slurm_gpus: 1 slurm_cpus_per_task: 8 diff --git a/.buildkite/hierarchies/pipeline.yml b/.buildkite/hierarchies/pipeline.yml index 2c78b59977..9755c22c95 100644 --- a/.buildkite/hierarchies/pipeline.yml +++ b/.buildkite/hierarchies/pipeline.yml @@ -29,9 +29,6 @@ steps: - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=experiments/ClimaEarth/ artifacts/download_artifacts.jl" - agents: queue: clima modules: climacommon/2024_10_09 diff --git a/.buildkite/longruns/pipeline.yml b/.buildkite/longruns/pipeline.yml index 06b7491672..842de23793 100644 --- a/.buildkite/longruns/pipeline.yml +++ b/.buildkite/longruns/pipeline.yml @@ -27,12 +27,6 @@ steps: - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=artifacts -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - - "julia --project=artifacts -e 'using Pkg; Pkg.precompile()'" - - "julia --project=artifacts -e 'using Pkg; Pkg.status()'" - - "julia --project=artifacts artifacts/download_artifacts.jl" - agents: slurm_cpus_per_task: 8 env: @@ -50,12 +44,6 @@ steps: - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=artifacts -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - - "julia --project=artifacts -e 'using Pkg; Pkg.precompile()'" - - "julia --project=artifacts -e 'using Pkg; Pkg.status()'" - - "julia --project=artifacts artifacts/download_artifacts.jl" - agents: queue: clima modules: climacommon/2024_10_09 diff --git a/.buildkite/nightly/pipeline.yml b/.buildkite/nightly/pipeline.yml index ccddcfe4d2..cd06431802 100644 --- a/.buildkite/nightly/pipeline.yml +++ b/.buildkite/nightly/pipeline.yml @@ -34,9 +34,6 @@ steps: - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=experiments/ClimaEarth/ artifacts/download_artifacts.jl" - agents: slurm_gpus: 1 slurm_cpus_per_task: 8 diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 8bf2499140..d45405ac51 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -66,9 +66,6 @@ steps: - "julia --project=test/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=test/ -e 'using Pkg; Pkg.status()'" - - echo "--- Download artifacts" - - "julia --project=experiments/ClimaEarth/ artifacts/download_artifacts.jl" - concurrency: 1 concurrency_group: 'depot/climacoupler-ci' agents: diff --git a/artifacts/Artifacts.toml b/artifacts/Artifacts.toml deleted file mode 100644 index 3b83c4abe9..0000000000 --- a/artifacts/Artifacts.toml +++ /dev/null @@ -1,8 +0,0 @@ -[land_mask] -git-tree-sha1 = "e41bc8c44124f867b64a9d70f1599515ae27f38a" - -[sic] -git-tree-sha1 = "139d23f6de29900917d79b41a87a8ee6483c72d0" - -[sst] -git-tree-sha1 = "9969543acd3c9084b8238b7858d0c76aa0bf98a7" diff --git a/artifacts/Manifest-v1.11.toml b/artifacts/Manifest-v1.11.toml deleted file mode 100644 index 2dc60491de..0000000000 --- a/artifacts/Manifest-v1.11.toml +++ /dev/null @@ -1,1556 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.11.0" -manifest_format = "2.0" -project_hash = "7bf244a49dc56921c8c55170d67cb509840b5f7a" - -[[deps.ADTypes]] -git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.9.0" -weakdeps = ["ChainRulesCore", "EnzymeCore"] - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesEnzymeCoreExt = "EnzymeCore" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] -git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.38" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsDatesExt = "Dates" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - AccessorsTestExt = "Test" - AccessorsUnitfulExt = "Unitful" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.4" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.ArgParse]] -deps = ["Logging", "TextWrap"] -git-tree-sha1 = "22cf435ac22956a7b45b0168abbc871176e7eecc" -uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -version = "1.2.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.2" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.16.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" - 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-version = "1.11.0" - -[[deps.Unrolled]] -deps = ["MacroTools"] -git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" -uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" -version = "0.1.5" - -[[deps.UnrolledUtilities]] -git-tree-sha1 = "1244bd810bfd53c539ef5463b01dd9b808c2e5da" -uuid = "0fe1646c-419e-43be-ac14-22321958931b" -version = "0.1.5" -weakdeps = ["StaticArrays"] - - [deps.UnrolledUtilities.extensions] - UnrolledUtilitiesStaticArraysExt = "StaticArrays" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "2d17fabcd17e67d7625ce9c531fb9f40b7c42ce4" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.2.1" - -[[deps.VectorInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" -uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.3+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.6+0" - -[[deps.YAML]] -deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" -uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.12" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" - -[[deps.libaec_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" -uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.1.2+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.11.0+0" - -[[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" -uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.11.1+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.59.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" diff --git a/artifacts/Project.toml b/artifacts/Project.toml deleted file mode 100644 index a12f5a5b7b..0000000000 --- a/artifacts/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a" -ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -ClimaLand = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" diff --git a/artifacts/download_artifacts.jl b/artifacts/download_artifacts.jl deleted file mode 100644 index 7c2a0811ee..0000000000 --- a/artifacts/download_artifacts.jl +++ /dev/null @@ -1,20 +0,0 @@ - -# Download atmos artifacts -module Atmos -import ClimaAtmos -include(joinpath(pkgdir(ClimaAtmos), "artifacts", "download_artifacts.jl")) -trigger_download() -end - -# Download land artifacts -module Land -import ClimaLand -if pkgversion(ClimaLand) < v"0.15.2" - include(joinpath(pkgdir(ClimaLand), "src", "standalone", "Bucket", "artifacts", "artifacts.jl")) - @info "CESM", cesm2_albedo_dataset_path() - @info "Bareground albedo", bareground_albedo_dataset_path() -end -end - - -include(joinpath(@__DIR__, "artifact_funcs.jl")) diff --git a/experiments/ClimaEarth/run_amip.jl b/experiments/ClimaEarth/run_amip.jl index 2be2d10adb..33626d080b 100644 --- a/experiments/ClimaEarth/run_amip.jl +++ b/experiments/ClimaEarth/run_amip.jl @@ -208,11 +208,7 @@ config_dict["print_config_dict"] && @info(config_dict) #= ## Data File Paths -The data files are downloaded from the `ClimaCoupler` artifacts directory. If the data files are not present, they are downloaded from the -original sources. =# -include(joinpath(pkgdir(ClimaCoupler), "artifacts", "artifact_funcs.jl")) - sst_data, sic_data = try joinpath(@clima_artifact("historical_sst_sic", comms_ctx), "MODEL.SST.HAD187001-198110.OI198111-202206.nc"), joinpath(@clima_artifact("historical_sst_sic", comms_ctx), "MODEL.ICE.HAD187001-198110.OI198111-202206.nc") diff --git a/experiments/ClimaEarth/run_cloudy_slabplanet.jl b/experiments/ClimaEarth/run_cloudy_slabplanet.jl index 327fb6f956..662a4f85ba 100644 --- a/experiments/ClimaEarth/run_cloudy_slabplanet.jl +++ b/experiments/ClimaEarth/run_cloudy_slabplanet.jl @@ -160,7 +160,6 @@ dir_paths = setup_output_dirs(output_dir = coupler_output_dir, comms_ctx = comms #= ## Data File Paths =# -include(joinpath(pkgdir(ClimaCoupler), "artifacts", "artifact_funcs.jl")) land_mask_data = joinpath(@clima_artifact("earth_orography_60arcseconds", comms_ctx), "ETOPO_2022_v1_60s_N90W180_surface.nc") diff --git a/test/mpi_tests/local_checks.sh b/test/mpi_tests/local_checks.sh index 6f123edce3..5ce7210ae8 100644 --- a/test/mpi_tests/local_checks.sh +++ b/test/mpi_tests/local_checks.sh @@ -24,11 +24,6 @@ julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.instantiate(;verbose= julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()' julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()' -julia --project=artifacts -e 'using Pkg; Pkg.instantiate(;verbose=true)' -julia --project=artifacts -e 'using Pkg; Pkg.precompile()' -julia --project=artifacts -e 'using Pkg; Pkg.status()' -julia --project=artifacts artifacts/download_artifacts.jl - srun -K julia --project=experiments/ClimaEarth/ experiments/ClimaEarth/run_amip.jl --config_file $CONFIG_FILE --job_id $JOB_ID # restart from simulation time of 400 seconds @@ -44,11 +39,11 @@ srun -K julia --project=experiments/ClimaEarth/ experiments/ClimaEarth/run_amip. # throw an error if no restart checkpoint files are found if [ $(ls -1 $RESTART_DIR/checkpoint | wc -l) -lt 5 ]; then - echo "Error: RESTART_DIR does not contain enough files" - exit 1 + echo "Error: RESTART_DIR does not contain enough files" + exit 1 else - echo "Successful: RESTART_DIR contains $(ls -1 $RESTART_DIR/checkpoint | wc -l) files" - exit 0 + echo "Successful: RESTART_DIR contains $(ls -1 $RESTART_DIR/checkpoint | wc -l) files" + exit 0 fi # Trouble shooting? From 427df3b8277bc90618b800c69edbbfe0a7cf7507 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Tue, 5 Nov 2024 08:43:46 -0800 Subject: [PATCH 4/7] Remove sea breeze env --- .buildkite/pipeline.yml | 8 +- experiments/ClimaCore/Manifest-v1.11.toml | 241 +- experiments/ClimaCore/Manifest.toml | 241 +- experiments/ClimaCore/Project.toml | 10 +- .../ClimaCore/sea_breeze/Manifest-v1.11.toml | 2213 ----------------- .../ClimaCore/sea_breeze/Manifest.toml | 2178 ---------------- experiments/ClimaCore/sea_breeze/Project.toml | 18 - 7 files changed, 458 insertions(+), 4451 deletions(-) delete mode 100644 experiments/ClimaCore/sea_breeze/Manifest-v1.11.toml delete mode 100644 experiments/ClimaCore/sea_breeze/Manifest.toml delete mode 100644 experiments/ClimaCore/sea_breeze/Project.toml diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index d45405ac51..c21d33f060 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -33,12 +33,6 @@ steps: - "julia --project -e 'using Pkg; Pkg.precompile()'" - "julia --project -e 'using Pkg; Pkg.status()'" - - echo "--- Instantiate sea breeze env" - - "julia --project=experiments/ClimaCore/sea_breeze -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - - "julia --project=experiments/ClimaCore/sea_breeze -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\")'" - - "julia --project=experiments/ClimaCore/sea_breeze -e 'using Pkg; Pkg.precompile()'" - - "julia --project=experiments/ClimaCore/sea_breeze -e 'using Pkg; Pkg.status()'" - - echo "--- Instantiate climacore exp env" - "julia --project=experiments/ClimaCore/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project=experiments/ClimaCore/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\")'" @@ -246,7 +240,7 @@ steps: # CLIMACORE EXPERIMENTS - label: "sea_breeze" - command: "julia --color=yes --project=experiments/ClimaCore/sea_breeze experiments/ClimaCore/sea_breeze/run.jl" + command: "julia --color=yes --project=experiments/ClimaCore experiments/ClimaCore/sea_breeze/run.jl" artifact_paths: "experiments/ClimaCore/sea_breeze/output/*" agents: slurm_mem: 20GB diff --git a/experiments/ClimaCore/Manifest-v1.11.toml b/experiments/ClimaCore/Manifest-v1.11.toml index e4b6b5ffe6..c5d3d49fe3 100644 --- a/experiments/ClimaCore/Manifest-v1.11.toml +++ b/experiments/ClimaCore/Manifest-v1.11.toml @@ -2,7 +2,7 @@ julia_version = "1.11.1" manifest_format = "2.0" -project_hash = "e65d35c8980fc5b33190dd9da30247954f15a72c" +project_hash = "316c1d4547278d00d7ec1d28019997cfd810b793" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" @@ -141,6 +141,12 @@ weakdeps = ["BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysBandedMatricesExt = "BandedMatrices" +[[deps.Blosc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "ef12cdd1c7fb7e1dfd6fa8fd60d4db6bc61d2f23" +uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" +version = "1.21.6+0" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" @@ -152,6 +158,12 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" +[[deps.CFTime]] +deps = ["Dates", "Printf"] +git-tree-sha1 = "5afb5c5ba2688ca43a9ad2e5a91cbb93921ccfa1" +uuid = "179af706-886a-5703-950a-314cd64e0468" +version = "0.1.3" + [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" @@ -191,6 +203,24 @@ version = "0.14.19" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +[[deps.ClimaCorePlots]] +deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] +git-tree-sha1 = "4fc0c2a0845fc34a8d6c0e0a276d62a0d4e50286" +uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" +version = "0.2.10" + +[[deps.ClimaCoreTempestRemap]] +deps = ["ClimaComms", "ClimaCore", "CommonDataModel", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "99845c1da7e9f687180c49cf4d53140f21fc8683" +uuid = "d934ef94-cdd4-4710-83d6-720549644b70" +version = "0.3.18" + +[[deps.ClimaCoupler]] +deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] +path = "../../.." +uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" +version = "0.1.1" + [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] git-tree-sha1 = "dbc1d2c495f118c36a83fa93cd5311fe3a32f615" @@ -247,6 +277,12 @@ git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.11" +[[deps.CommonDataModel]] +deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] +git-tree-sha1 = "d6fb5bf939a2753c74984b11434ea25d6c397a58" +uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" +version = "0.3.6" + [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" @@ -398,6 +434,12 @@ version = "6.158.3" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +[[deps.DiffEqCallbacks]] +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d" +uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" +version = "4.0.0" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -410,6 +452,54 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.6.18" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.DiskArrays]] +deps = ["LRUCache", "OffsetArrays"] +git-tree-sha1 = "e0e89a60637a62d13aa2107f0acd169b9b9b77e7" +uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" +version = "0.4.6" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -492,6 +582,12 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.4" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" version = "1.11.0" @@ -562,6 +658,12 @@ git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.12" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" @@ -573,6 +675,11 @@ git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.4.0+1" +[[deps.GMP_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" +version = "6.3.0+0" + [[deps.GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" @@ -614,6 +721,12 @@ git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = "2.80.5+0" +[[deps.GnuTLS_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"] +git-tree-sha1 = "383db7d3f900f4c1f47a8a04115b053c095e48d3" +uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" +version = "3.8.4+0" + [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" @@ -638,10 +751,10 @@ version = "0.17.2" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+3" +version = "1.14.2+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -702,6 +815,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.5.7" + [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] git-tree-sha1 = "39d64b09147620f5ffbf6b2d3255be3c901bec63" @@ -798,6 +917,15 @@ git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.7+0" +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" @@ -960,6 +1088,12 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.1.0" +[[deps.Lz4_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846" +uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" +version = "1.10.0+1" + [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" @@ -1052,6 +1186,12 @@ version = "0.3.3" Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +[[deps.NCDatasets]] +deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] +git-tree-sha1 = "2c9dc92001ac06d432f363f37ff5552954d9947c" +uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" +version = "0.14.6" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" @@ -1070,16 +1210,43 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NetCDF_jll]] +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" +uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" +version = "400.902.209+0" + +[[deps.Nettle_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" +uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" +version = "3.7.2+0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.OffsetArrays]] +git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.1" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OpenBLAS32_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "dd806c813429ff09878ea3eeb317818f3ca02871" +uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" +version = "0.3.28+3" + [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1091,10 +1258,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" [[deps.OpenMPI_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] +git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.6+0" +version = "5.0.5+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1125,6 +1292,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.P11Kit_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" +uuid = "c2071276-7c44-58a7-b746-946036e04d0a" +version = "0.24.1+0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1482,15 +1655,12 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools" git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.8.0" +weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" @@ -1553,6 +1723,18 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.7.0+0" +[[deps.SurfaceFluxes]] +deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "aee530bde85cd41374273568cb649e72d82921e7" +uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" +version = "0.12.0" + + [deps.SurfaceFluxes.extensions] + CreateParametersExt = "ClimaParams" + + [deps.SurfaceFluxes.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911" @@ -1583,22 +1765,24 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423" +git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.17.8" +version = "0.17.3" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" - TaylorSeriesJLD2Ext = "JLD2" - TaylorSeriesRATExt = "RecursiveArrayTools" TaylorSeriesSAExt = "StaticArrays" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" - JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.TempestRemap_jll]] +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll"] +git-tree-sha1 = "723112218783928a20e0d865932694acfb7a7571" +uuid = "8573a8c5-1df0-515e-a024-abad257ee284" +version = "2.2.0+0" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -1610,6 +1794,18 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" +[[deps.Thermodynamics]] +deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] +git-tree-sha1 = "5de9f9f6019165cedb04e365a9f277a518ac5aaf" +uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" +version = "0.12.9" + + [deps.Thermodynamics.extensions] + CreateParametersExt = "ClimaParams" + + [deps.Thermodynamics.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" @@ -1627,6 +1823,11 @@ git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" +[[deps.TriplotBase]] +git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" +uuid = "981d1d27-644d-49a2-9326-4793e63143c3" +version = "0.1.0" + [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" @@ -1971,6 +2172,12 @@ git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+2" +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.11.1+0" + [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" diff --git a/experiments/ClimaCore/Manifest.toml b/experiments/ClimaCore/Manifest.toml index 3a5981a1d9..51359129b4 100644 --- a/experiments/ClimaCore/Manifest.toml +++ b/experiments/ClimaCore/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "6b9fec14119deb9fc14f5552a1a613fe7d4b1a07" +project_hash = "316c1d4547278d00d7ec1d28019997cfd810b793" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" @@ -139,6 +139,12 @@ weakdeps = ["BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysBandedMatricesExt = "BandedMatrices" +[[deps.Blosc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "ef12cdd1c7fb7e1dfd6fa8fd60d4db6bc61d2f23" +uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" +version = "1.21.6+0" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" @@ -150,6 +156,12 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" +[[deps.CFTime]] +deps = ["Dates", "Printf"] +git-tree-sha1 = "5afb5c5ba2688ca43a9ad2e5a91cbb93921ccfa1" +uuid = "179af706-886a-5703-950a-314cd64e0468" +version = "0.1.3" + [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" @@ -189,6 +201,24 @@ version = "0.14.19" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +[[deps.ClimaCorePlots]] +deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] +git-tree-sha1 = "4fc0c2a0845fc34a8d6c0e0a276d62a0d4e50286" +uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" +version = "0.2.10" + +[[deps.ClimaCoreTempestRemap]] +deps = ["ClimaComms", "ClimaCore", "CommonDataModel", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "99845c1da7e9f687180c49cf4d53140f21fc8683" +uuid = "d934ef94-cdd4-4710-83d6-720549644b70" +version = "0.3.18" + +[[deps.ClimaCoupler]] +deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] +path = "../../.." +uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" +version = "0.1.1" + [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] git-tree-sha1 = "dbc1d2c495f118c36a83fa93cd5311fe3a32f615" @@ -245,6 +275,12 @@ git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.11" +[[deps.CommonDataModel]] +deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] +git-tree-sha1 = "d6fb5bf939a2753c74984b11434ea25d6c397a58" +uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" +version = "0.3.6" + [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" @@ -395,6 +431,12 @@ version = "6.158.3" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +[[deps.DiffEqCallbacks]] +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d" +uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" +version = "4.0.0" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -407,6 +449,54 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.6.18" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.DiskArrays]] +deps = ["LRUCache", "OffsetArrays"] +git-tree-sha1 = "e0e89a60637a62d13aa2107f0acd169b9b9b77e7" +uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" +version = "0.4.6" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -488,6 +578,12 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.4" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -557,6 +653,12 @@ git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.12" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" @@ -567,6 +669,11 @@ git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.4.0+1" +[[deps.GMP_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" +version = "6.2.1+6" + [[deps.GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" @@ -608,6 +715,12 @@ git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = "2.80.5+0" +[[deps.GnuTLS_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"] +git-tree-sha1 = "383db7d3f900f4c1f47a8a04115b053c095e48d3" +uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" +version = "3.8.4+0" + [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" @@ -632,10 +745,10 @@ version = "0.17.2" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+3" +version = "1.14.2+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -695,6 +808,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.5.7" + [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] git-tree-sha1 = "39d64b09147620f5ffbf6b2d3255be3c901bec63" @@ -791,6 +910,15 @@ git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.7+0" +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" @@ -948,6 +1076,12 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.1.0" +[[deps.Lz4_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846" +uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" +version = "1.10.0+1" + [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" @@ -1038,6 +1172,12 @@ version = "0.3.3" Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +[[deps.NCDatasets]] +deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] +git-tree-sha1 = "2c9dc92001ac06d432f363f37ff5552954d9947c" +uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" +version = "0.14.6" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" @@ -1056,16 +1196,43 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NetCDF_jll]] +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" +uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" +version = "400.902.209+0" + +[[deps.Nettle_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" +uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" +version = "3.7.2+0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.OffsetArrays]] +git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.1" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OpenBLAS32_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" +version = "0.3.24+0" + [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1077,10 +1244,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" [[deps.OpenMPI_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] +git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.6+0" +version = "5.0.5+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1111,6 +1278,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.P11Kit_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" +uuid = "c2071276-7c44-58a7-b746-946036e04d0a" +version = "0.24.1+0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1459,15 +1632,12 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools" git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.8.0" +weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" @@ -1521,6 +1691,18 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" +[[deps.SurfaceFluxes]] +deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "aee530bde85cd41374273568cb649e72d82921e7" +uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" +version = "0.12.0" + + [deps.SurfaceFluxes.extensions] + CreateParametersExt = "ClimaParams" + + [deps.SurfaceFluxes.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911" @@ -1551,22 +1733,24 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423" +git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.17.8" +version = "0.17.3" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" - TaylorSeriesJLD2Ext = "JLD2" - TaylorSeriesRATExt = "RecursiveArrayTools" TaylorSeriesSAExt = "StaticArrays" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" - JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.TempestRemap_jll]] +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll"] +git-tree-sha1 = "723112218783928a20e0d865932694acfb7a7571" +uuid = "8573a8c5-1df0-515e-a024-abad257ee284" +version = "2.2.0+0" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -1577,6 +1761,18 @@ version = "0.1.1" deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +[[deps.Thermodynamics]] +deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] +git-tree-sha1 = "5de9f9f6019165cedb04e365a9f277a518ac5aaf" +uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" +version = "0.12.9" + + [deps.Thermodynamics.extensions] + CreateParametersExt = "ClimaParams" + + [deps.Thermodynamics.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" @@ -1594,6 +1790,11 @@ git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" +[[deps.TriplotBase]] +git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" +uuid = "981d1d27-644d-49a2-9326-4793e63143c3" +version = "0.1.0" + [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" @@ -1936,6 +2137,12 @@ git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+2" +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.11.1+0" + [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" diff --git a/experiments/ClimaCore/Project.toml b/experiments/ClimaCore/Project.toml index d1e69000cb..16d7fea829 100644 --- a/experiments/ClimaCore/Project.toml +++ b/experiments/ClimaCore/Project.toml @@ -1,10 +1,18 @@ [deps] ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" +ClimaCorePlots = "cf7c7e5a-b407-4c48-9047-11a94a308626" +ClimaCoupler = "4ade58fe-a8da-486c-bd89-46df092ec0c7" ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" +DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" [compat] ClimaTimeSteppers = "0.7" -PrettyTables = "2.3" +PrettyTables = "2" +Random = "1" diff --git a/experiments/ClimaCore/sea_breeze/Manifest-v1.11.toml b/experiments/ClimaCore/sea_breeze/Manifest-v1.11.toml deleted file mode 100644 index c5d3d49fe3..0000000000 --- a/experiments/ClimaCore/sea_breeze/Manifest-v1.11.toml +++ /dev/null @@ -1,2213 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.11.1" -manifest_format = "2.0" -project_hash = "316c1d4547278d00d7ec1d28019997cfd810b793" - -[[deps.ADTypes]] -git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.9.0" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] -git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.38" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsDatesExt = "Dates" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - AccessorsTestExt = "Test" - AccessorsUnitfulExt = "Unitful" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.1.1" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.2" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.16.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528" -uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.4" -weakdeps = ["SparseArrays"] - - [deps.ArrayLayouts.extensions] - ArrayLayoutsSparseArraysExt = "SparseArrays" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -version = "1.11.0" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579" -uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.5" -weakdeps = ["SparseArrays"] - - [deps.BandedMatrices.extensions] - BandedMatricesSparseArraysExt = "SparseArrays" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" -version = "1.11.0" - -[[deps.BitFlags]] -git-tree-sha1 = 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"1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "936081b536ae4aa65415d869287d43ef3cb576b2" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.53.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaec_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" -uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.1.2+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" -uuid = 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-git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.44+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+2" - -[[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" -uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.11.1+0" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/experiments/ClimaCore/sea_breeze/Project.toml b/experiments/ClimaCore/sea_breeze/Project.toml deleted file mode 100644 index 16d7fea829..0000000000 --- a/experiments/ClimaCore/sea_breeze/Project.toml +++ /dev/null @@ -1,18 +0,0 @@ -[deps] -ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" -ClimaCorePlots = "cf7c7e5a-b407-4c48-9047-11a94a308626" -ClimaCoupler = "4ade58fe-a8da-486c-bd89-46df092ec0c7" -ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" - -[compat] -ClimaTimeSteppers = "0.7" -PrettyTables = "2" -Random = "1" From 81635109c8493df95b9680aa7810f08ceefd6877 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Tue, 5 Nov 2024 08:46:48 -0800 Subject: [PATCH 5/7] Remove perf env --- .buildkite/pipeline.yml | 20 +- perf/Manifest-v1.11.toml | 3119 -------------------------------------- perf/Manifest.toml | 2980 ------------------------------------ perf/Project.toml | 49 - perf/flame.jl | 2 + perf/flame_diff.jl | 2 + perf/flame_test.jl | 2 + 7 files changed, 13 insertions(+), 6161 deletions(-) delete mode 100644 perf/Manifest-v1.11.toml delete mode 100644 perf/Manifest.toml delete mode 100644 perf/Project.toml diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index c21d33f060..76a4a8de04 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -42,17 +42,11 @@ steps: - echo "--- Instantiate ClimaEarth env" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.develop(path=\".\")'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\")'" + # ProfileCanvas and JSON are used by the perf jobs + - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\"); Pkg.add(\"ProfileCanvas\"); Pkg.add(\"JSON\")'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" - - echo "--- Instantiate perf env" - - "julia --project=perf/ -e 'using Pkg; Pkg.develop(path=\".\")'" - - "julia --project=perf/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - - "julia --project=perf/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\")'" - - "julia --project=perf/ -e 'using Pkg; Pkg.precompile()'" - - "julia --project=perf/ -e 'using Pkg; Pkg.status()'" - - echo "--- Instantiate test env" - "julia --project=test/ -e 'using Pkg; Pkg.develop(path=\".\")'" - "julia --project=test/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" @@ -105,7 +99,7 @@ steps: slurm_mem: 16GB - label: "Perf flame graph diff tests" - command: "julia --color=yes --project=perf/ perf/flame_test.jl --job_id flame_perf_target" + command: "julia --color=yes --project=experiments/ClimaEarth/ perf/flame_test.jl --job_id flame_perf_target" timeout_in_minutes: 5 agents: slurm_mem: 16GB @@ -224,13 +218,13 @@ steps: slurm_mem: 20GB - label: ":rocket: Slabplanet: default (unthreaded) - flame graph and allocation tests" - command: "julia --color=yes --project=perf perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_default_unthreaded.yml --job_id perf_default_unthreaded" + command: "julia --color=yes --project=experiments/ClimaEarth perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_default_unthreaded.yml --job_id perf_default_unthreaded" artifact_paths: "perf/output/perf_default_unthreaded/*" agents: slurm_mem: 20GB - label: ":rocket: Slabplanet: default (unthreaded) - flame graph diff" - command: "julia --color=yes --project=perf perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_default_unthreaded.yml --job_id perf_diff_default_unthreaded" + command: "julia --color=yes --project=experiments/ClimaEarth perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_default_unthreaded.yml --job_id perf_diff_default_unthreaded" artifact_paths: "perf/output/perf_diff_default_unthreaded/*" agents: slurm_mem: 20GB @@ -342,13 +336,13 @@ steps: # PERFORMANCE RUNS: flame graphs + allocation tests - label: ":rocket: flame graph and allocation tests: perf_coarse_single_ft64" - command: "julia --color=yes --project=perf perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_coarse_single_ft64.yml --job_id perf_coarse_single_ft64" + command: "julia --color=yes --project=experiments/ClimaEarth perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_coarse_single_ft64.yml --job_id perf_coarse_single_ft64" artifact_paths: "perf/output/perf_coarse_single_ft64/*" agents: slurm_mem: 20GB - label: ":rocket: performance: flame graph diff: perf_diff_coarse_single_ft64" - command: "julia --color=yes --project=perf perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_coarse_single_ft64.yml --job_id perf_diff_coarse_single_ft64" + command: "julia --color=yes --project=experiments/ClimaEarth perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_coarse_single_ft64.yml --job_id perf_diff_coarse_single_ft64" artifact_paths: "perf/output/perf_diff_coarse_single_ft64/*" agents: slurm_mem: 20GB diff --git a/perf/Manifest-v1.11.toml b/perf/Manifest-v1.11.toml deleted file mode 100644 index 13a57dbad2..0000000000 --- a/perf/Manifest-v1.11.toml +++ /dev/null @@ -1,3119 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.11.1" -manifest_format = "2.0" -project_hash = "f717fcef01aa84182cf74c0e35582f847f237995" - -[[deps.ADTypes]] -git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.9.0" -weakdeps = 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"JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.YAML]] -deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" -uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.12" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "936081b536ae4aa65415d869287d43ef3cb576b2" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.53.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.isoband_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" -uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" -version = "0.2.3+0" - -[[deps.libaec_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" -uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.1.2+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.2+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.11.0+0" - -[[deps.libdecor_jll]] -deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] -git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" -uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" -version = "0.2.2+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.3+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.44+0" - -[[deps.libsixel_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df" -uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+1" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+2" - -[[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" -uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.11.1+0" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" - -[[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" -uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/perf/Project.toml b/perf/Project.toml deleted file mode 100644 index d8688a832d..0000000000 --- a/perf/Project.toml +++ /dev/null @@ -1,49 +0,0 @@ -[deps] -ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -ClimaAnalysis = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" -ClimaCorePlots = "cf7c7e5a-b407-4c48-9047-11a94a308626" -ClimaCoupler = "4ade58fe-a8da-486c-bd89-46df092ec0c7" -ClimaDiagnostics = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f" -ClimaLand = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" -ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -ClimaUtilities = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" -GeoMakie = "db073c08-6b98-4ee5-b6a4-5efafb3259c6" -Glob = "c27321d9-0574-5035-807b-f59d2c89b15c" -Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Poppler_jll = "9c32591e-4766-534b-9725-b71a8799265b" -PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -ProfileCanvas = "efd6af41-a80b-495e-886c-e51b0c7d77a3" -SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -SurfaceFluxes = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" - -[compat] -ArgParse = "1.1" -ClimaAnalysis = "0.5.4" -ClimaAtmos = "0.27" -ClimaCorePlots = "0.2" -ClimaDiagnostics = "0.2" -ClimaLand = "0.14, 0.15" -ClimaParams = "0.10" -ClimaTimeSteppers = "0.7" -ClimaUtilities = "0.1" -Glob = "1" -Interpolations = "0.14, 0.15" -StaticArrays = "1" -YAML = "0.4" diff --git a/perf/flame.jl b/perf/flame.jl index 0434d3d914..f849e82af4 100644 --- a/perf/flame.jl +++ b/perf/flame.jl @@ -1,6 +1,8 @@ # flame.jl: provides allocation breakdown for individual backtraces for single-process unthredded runs # and check for overall allocation limits based on previous runs # copied and modified from `ClimaAtmos/perf` +# +# To run this, add ProfileCanvas to the ClimaEarth environment import Test: @test, @testset import ClimaAtmos as CA diff --git a/perf/flame_diff.jl b/perf/flame_diff.jl index 3b9f32ea7a..84b3b52327 100644 --- a/perf/flame_diff.jl +++ b/perf/flame_diff.jl @@ -1,6 +1,8 @@ # flame_diff.jl: provides allocation breakdown for individual backtraces for single-process unthredded runs # and check for fractional change in allocation compared to the last staged run +# The JSON package is needed to run this + import ClimaAtmos as CA import Profile import Base: view diff --git a/perf/flame_test.jl b/perf/flame_test.jl index 4093e16551..183269161f 100644 --- a/perf/flame_test.jl +++ b/perf/flame_test.jl @@ -1,3 +1,5 @@ +# The JSON package is needed to run this + import Test: @test, @testset import Profile import Base: view From df4784489522551d281b2250f20d60fa38829687 Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Wed, 6 Nov 2024 07:36:01 -0800 Subject: [PATCH 6/7] Update deps --- experiments/ClimaCore/Manifest-v1.11.toml | 48 ++++++++++++---------- experiments/ClimaCore/Manifest.toml | 22 +++++----- experiments/ClimaEarth/Manifest-v1.11.toml | 26 ++++++------ experiments/ClimaEarth/Manifest.toml | 24 +++++------ 4 files changed, 62 insertions(+), 58 deletions(-) diff --git a/experiments/ClimaCore/Manifest-v1.11.toml b/experiments/ClimaCore/Manifest-v1.11.toml index c5d3d49fe3..775e228304 100644 --- a/experiments/ClimaCore/Manifest-v1.11.toml +++ b/experiments/ClimaCore/Manifest-v1.11.toml @@ -217,7 +217,7 @@ version = "0.3.18" [[deps.ClimaCoupler]] deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -path = "../../.." +path = "../.." uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.1" @@ -436,9 +436,9 @@ version = "6.158.3" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d" +git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.0.0" +version = "4.1.0" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -454,9 +454,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856" +git-tree-sha1 = "5e27b35fae15c8f955c07edf608baa21d091e366" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.18" +version = "0.6.20" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -751,10 +751,10 @@ version = "0.17.2" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.14.3+3" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -817,9 +817,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.5.7" +version = "0.4.53" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1211,10 +1211,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] -git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "4686378c4ae1d1948cfbe46c002a11a4265dcb07" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.209+0" +version = "400.902.211+1" [[deps.Nettle_jll]] deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1258,10 +1258,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" [[deps.OpenMPI_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1544,9 +1544,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7" +git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.58.0" +version = "2.58.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1765,16 +1765,20 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2" +git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.17.3" +version = "0.17.8" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" + TaylorSeriesJLD2Ext = "JLD2" + TaylorSeriesRATExt = "RecursiveArrayTools" TaylorSeriesSAExt = "StaticArrays" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.TempestRemap_jll]] @@ -1900,9 +1904,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" +git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" +version = "0.4.8" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] diff --git a/experiments/ClimaCore/Manifest.toml b/experiments/ClimaCore/Manifest.toml index 51359129b4..5190526a87 100644 --- a/experiments/ClimaCore/Manifest.toml +++ b/experiments/ClimaCore/Manifest.toml @@ -215,7 +215,7 @@ version = "0.3.18" [[deps.ClimaCoupler]] deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -path = "../../.." +path = "../.." uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.1" @@ -433,9 +433,9 @@ version = "6.158.3" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d" +git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.0.0" +version = "4.1.0" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -451,9 +451,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856" +git-tree-sha1 = "5e27b35fae15c8f955c07edf608baa21d091e366" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.18" +version = "0.6.20" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -810,9 +810,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.5.7" +version = "0.5.8" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1523,9 +1523,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7" +git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.58.0" +version = "2.58.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1865,9 +1865,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" +git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" +version = "0.4.8" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] diff --git a/experiments/ClimaEarth/Manifest-v1.11.toml b/experiments/ClimaEarth/Manifest-v1.11.toml index d4aae81dd8..f7e6452ad5 100644 --- a/experiments/ClimaEarth/Manifest-v1.11.toml +++ b/experiments/ClimaEarth/Manifest-v1.11.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.11.0" +julia_version = "1.11.1" manifest_format = "2.0" project_hash = "5649495ebeefc92d7b9428a7f4ac45942550b0ca" @@ -665,9 +665,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0" +git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.112" +version = "0.25.113" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -950,9 +950,9 @@ version = "0.4.2" [[deps.GeoInterface]] deps = ["Extents", "GeoFormatTypes"] -git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2" +git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.7" +version = "1.3.8" [[deps.GeoInterfaceMakie]] deps = ["GeoInterface", "GeometryBasics", "MakieCore"] @@ -1245,9 +1245,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.5.7" +version = "0.5.8" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1773,9 +1773,9 @@ version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] -git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633" +git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7" uuid = "52e1d378-f018-4a11-a4be-720524705ac7" -version = "0.3.2" +version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2215,9 +2215,9 @@ version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7" +git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.58.0" +version = "2.58.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2670,9 +2670,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" +git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" +version = "0.4.8" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] diff --git a/experiments/ClimaEarth/Manifest.toml b/experiments/ClimaEarth/Manifest.toml index ad855d1119..367af82d93 100644 --- a/experiments/ClimaEarth/Manifest.toml +++ b/experiments/ClimaEarth/Manifest.toml @@ -660,9 +660,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0" +git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.112" +version = "0.25.113" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -943,9 +943,9 @@ version = "0.4.2" [[deps.GeoInterface]] deps = ["Extents", "GeoFormatTypes"] -git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2" +git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.7" +version = "1.3.8" [[deps.GeoInterfaceMakie]] deps = ["GeoInterface", "GeometryBasics", "MakieCore"] @@ -1237,9 +1237,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" +git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.5.7" +version = "0.5.8" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1758,9 +1758,9 @@ version = "0.3.23+4" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] -git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633" +git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7" uuid = "52e1d378-f018-4a11-a4be-720524705ac7" -version = "0.3.2" +version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2193,9 +2193,9 @@ version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7" +git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.58.0" +version = "2.58.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2633,9 +2633,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" +git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" +version = "0.4.8" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] From 1bb0391348b17dd95b3c0809da2961337b0c6a7d Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Wed, 6 Nov 2024 15:05:19 -0800 Subject: [PATCH 7/7] Remove perf --- .buildkite/hierarchies/pipeline.yml | 1 - .buildkite/pipeline.yml | 51 +- .dev/up_deps.jl | 2 - .gitignore | 1 - docs/src/performance.md | 6 + perf/ProfileCanvasDiff.jl | 492 -------------------- perf/ProfileViewerDiff.js | 699 ---------------------------- perf/flame.jl | 119 ----- perf/flame_diff.jl | 133 ------ perf/flame_test.jl | 121 ----- 10 files changed, 7 insertions(+), 1618 deletions(-) delete mode 100644 perf/ProfileCanvasDiff.jl delete mode 100644 perf/ProfileViewerDiff.js delete mode 100644 perf/flame.jl delete mode 100644 perf/flame_diff.jl delete mode 100644 perf/flame_test.jl diff --git a/.buildkite/hierarchies/pipeline.yml b/.buildkite/hierarchies/pipeline.yml index 9755c22c95..2fceec1457 100644 --- a/.buildkite/hierarchies/pipeline.yml +++ b/.buildkite/hierarchies/pipeline.yml @@ -13,7 +13,6 @@ env: SLURM_KILL_BAD_EXIT: 1 CONFIG_PATH: "config/longrun_configs" - PERF_CONFIG_PATH: "config/perf_configs" timeout_in_minutes: 1440 diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 76a4a8de04..e5d17740e7 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -14,7 +14,6 @@ env: SLURM_KILL_BAD_EXIT: 1 CONFIG_PATH: "config/ci_configs" - PERF_CONFIG_PATH: "config/perf_configs" timeout_in_minutes: 240 @@ -42,8 +41,7 @@ steps: - echo "--- Instantiate ClimaEarth env" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.develop(path=\".\")'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - # ProfileCanvas and JSON are used by the perf jobs - - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\"); Pkg.add(\"ProfileCanvas\"); Pkg.add(\"JSON\")'" + - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.add(\"MPI\"); Pkg.add(\"CUDA\");'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.precompile()'" - "julia --project=experiments/ClimaEarth/ -e 'using Pkg; Pkg.status()'" @@ -98,12 +96,6 @@ steps: slurm_ntasks: 2 slurm_mem: 16GB - - label: "Perf flame graph diff tests" - command: "julia --color=yes --project=experiments/ClimaEarth/ perf/flame_test.jl --job_id flame_perf_target" - timeout_in_minutes: 5 - agents: - slurm_mem: 16GB - - group: "GPU: unit tests and global bucket" steps: - label: "GPU runtests" @@ -202,33 +194,6 @@ steps: # ... - - # PERFORMANCE - - # slabplanet default: track unthreaded performance (alloc tests, flame graph, flame graph diff, build history) - - label: ":rocket: Slabplanet: default (unthreaded)" - key: "slabplanet_unthreaded" - command: "julia --color=yes --project=experiments/ClimaEarth/ experiments/ClimaEarth/run_amip.jl --config_file $CONFIG_PATH/default_unthreaded.yml --job_id default_unthreaded" - artifact_paths: "experiments/ClimaEarth/output/slabplanet/default_unthreaded/artifacts/*" - env: - FLAME_PLOT: "" - BUILD_HISTORY_HANDLE: "" - agents: - slurm_ntasks: 1 - slurm_mem: 20GB - - - label: ":rocket: Slabplanet: default (unthreaded) - flame graph and allocation tests" - command: "julia --color=yes --project=experiments/ClimaEarth perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_default_unthreaded.yml --job_id perf_default_unthreaded" - artifact_paths: "perf/output/perf_default_unthreaded/*" - agents: - slurm_mem: 20GB - - - label: ":rocket: Slabplanet: default (unthreaded) - flame graph diff" - command: "julia --color=yes --project=experiments/ClimaEarth perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_default_unthreaded.yml --job_id perf_diff_default_unthreaded" - artifact_paths: "perf/output/perf_diff_default_unthreaded/*" - agents: - slurm_mem: 20GB - # < end Drivers for release # CLIMACORE EXPERIMENTS @@ -333,20 +298,6 @@ steps: agents: slurm_mem: 20GB - # PERFORMANCE RUNS: flame graphs + allocation tests - - - label: ":rocket: flame graph and allocation tests: perf_coarse_single_ft64" - command: "julia --color=yes --project=experiments/ClimaEarth perf/flame.jl --config_file $PERF_CONFIG_PATH/perf_coarse_single_ft64.yml --job_id perf_coarse_single_ft64" - artifact_paths: "perf/output/perf_coarse_single_ft64/*" - agents: - slurm_mem: 20GB - - - label: ":rocket: performance: flame graph diff: perf_diff_coarse_single_ft64" - command: "julia --color=yes --project=experiments/ClimaEarth perf/flame_diff.jl --config_file $PERF_CONFIG_PATH/perf_diff_coarse_single_ft64.yml --job_id perf_diff_coarse_single_ft64" - artifact_paths: "perf/output/perf_diff_coarse_single_ft64/*" - agents: - slurm_mem: 20GB - - group: "Hierarchy tests (1d)" steps: - label: ":construction: Dry Held Suarez" diff --git a/.dev/up_deps.jl b/.dev/up_deps.jl index 9c354ace36..e3bce0cb84 100644 --- a/.dev/up_deps.jl +++ b/.dev/up_deps.jl @@ -6,10 +6,8 @@ files in all of our environments. root = dirname(@__DIR__) dirs = ( root, - joinpath(root, "artifacts"), joinpath(root, "test"), joinpath(root, ".dev"), - joinpath(root, "perf"), joinpath(root, "docs"), joinpath(root, "experiments/ClimaEarth"), ) diff --git a/.gitignore b/.gitignore index 6ed11efb34..f301fa8f17 100644 --- a/.gitignore +++ b/.gitignore @@ -30,7 +30,6 @@ docs/src/generated/ # Experiments !experiments/ClimaEarth/**/Manifest.toml !experiments/ClimaCore/**/Manifest.toml -!perf/Manifest.toml # Output output/ diff --git a/docs/src/performance.md b/docs/src/performance.md index d2cc1aa1ff..400a694c9e 100644 --- a/docs/src/performance.md +++ b/docs/src/performance.md @@ -1,5 +1,11 @@ # Performance Analysis Tools +Until commit +[7a7e98](https://github.com/CliMA/ClimaCoupler.jl/tree/7a7e98db25fe740b6ff0e3eca1e028e876a8a09e), +ClimaCoupler provided included performance jobs. You can find them by following the link above. + +Below is a short description. + `ClimaCoupler.jl` provides basic tools for analyzing performance: 1. **Flame graphs**: the `perf/flame.jl` script is run by Buildkite to produce flame graphs using [ProfileCanvas.jl](https://github.com/pfitzseb/ProfileCanvas.jl) in the `perf/output/` directory. 2. **Job walltime and allocation history**: use Buildkite to trigger the [`build_history`](https://github.com/CliMA/slurm-buildkite/blob/master/bin/build_history) script to output an interactive plot with the history of memory usage and time elapsed for each tracked job (default: current build and past builds of the `staging` branch over the past year). Use `key` to select which jobs to track. More documentation can be found in the [SLURM-Buildkite Wiki](https://github.com/CliMA/slurm-buildkite/wiki/Memory#plotting-memory-usage-over-time). diff --git a/perf/ProfileCanvasDiff.jl b/perf/ProfileCanvasDiff.jl deleted file mode 100644 index a7ebcc7bd6..0000000000 --- a/perf/ProfileCanvasDiff.jl +++ /dev/null @@ -1,492 +0,0 @@ -# temporarily copied and modified from https://github.com/pfitzseb/ProfileCanvas.jl - -module ProfileCanvasDiff - -using Profile, JSON, REPL, Pkg.Artifacts, Base64 - -export @profview, @profview_allocs - -struct ProfileData - data::Any - typ::Any -end - -mutable struct ProfileFrame - func::String - file::String # human readable file name - path::String # absolute path - line::Int # 1-based line number - count::Int # number of samples in this frame - countLabel::Union{Missing, String} # defaults to `$count samples` - flags::UInt8 # any or all of ProfileFrameFlag - taskId::Union{Missing, UInt} - children::Vector{ProfileFrame} - count_change::Float64 # change in count or self_count: (new - old) -end - -struct ProfileDisplay <: Base.Multimedia.AbstractDisplay end - -function __init__() - pushdisplay(ProfileDisplay()) - - atreplinit(i -> begin - while ProfileDisplay() in Base.Multimedia.displays - popdisplay(ProfileDisplay()) - end - pushdisplay(ProfileDisplay()) - end) -end - -function jlprofile_data_uri(build_path) - path = joinpath(build_path, "ProfileViewerDiff.js") - @info "the module path is $path" - str = read(path, String) - - return string("data:text/javascript;base64,", base64encode(str)) -end - -function Base.show(io::IO, ::MIME"text/html", canvas::ProfileData, build_path = "") - id = "profiler-container-$(round(Int, rand()*100000))" - - data_uri = (jlprofile_data_uri(build_path)) - println( - io, - """ -
- - """, - ) -end - -function Base.display(_::ProfileDisplay, canvas::ProfileData) - - file = html_file(string(tempname(), ".html"), canvas) - url = "file://$file" - - if Sys.iswindows() - run(`cmd /c "start $url"`) - elseif Sys.isapple() - run(`open $url`) - elseif Sys.islinux() || Sys.isbsd() - run(`xdg-open $url`) - end -end - -html_file( - filename, - data = Profile.fetch(); - build_path = "", - tracked_list = Dict{String, Int}(;), - self_count = false, - kwargs..., -) = html_file( - filename, - build_path = build_path, - view(data; tracked_list = tracked_list, self_count = self_count, kwargs...)[1], -) - -function html_file(file::AbstractString, canvas::ProfileData; build_path = "") - @assert endswith(file, ".html") - - data_uri = jlprofile_data_uri(build_path) - open(file, "w") do io - id = "profiler-container-$(round(Int, rand()*100000))" - - println( - io, - """ - - - - - -
- - - - """, - ) - end - return file -end - -using Profile - -# https://github.com/timholy/FlameGraphs.jl/blob/master/src/graph.jl -const ProfileFrameFlag = ( - RuntimeDispatch = UInt8(2^0), - GCEvent = UInt8(2^1), - REPL = UInt8(2^2), - Compilation = UInt8(2^3), - TaskEvent = UInt8(2^4), -) - -function view(data = Profile.fetch(); C = false, tracked_list = Dict{String, Int}(;), self_count = false, kwargs...) - - d = Dict{String, ProfileFrame}() - - new_tracked_list = Dict{String, Int}(;) - - if VERSION >= v"1.8.0-DEV.460" - threads = ["all", 1:Threads.nthreads()...] - else - threads = ["all"] - end - - if isempty(data) - Profile.warning_empty() - return - end - - lidict = Profile.getdict(unique(data)) - data_u64 = convert(Vector{UInt64}, data) - for thread in threads - graph = stackframetree(data_u64, lidict; thread = thread, kwargs...) - curr_tree = make_tree( - ProfileFrame("root", "", "", 0, graph.count, missing, 0x0, missing, ProfileFrame[], 999), #root process - graph; - C = C, - tracked_list = tracked_list, - kwargs..., - ) - - # if self_count, convert counts (current function + children) to self_counts (current function only) - curr_tree = self_count ? iterate_self_change!(curr_tree, tracked_list) : curr_tree - - # create a new Dict with the counts of the current job - new_tracked_list = log_counts(curr_tree) - - d[string(thread)] = curr_tree - - end - - - return (ProfileData(d, "Thread"), new_tracked_list) -end - -""" - iterate_self_change!(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, tracked_list::Dict) - -Iterates over all child nodes of the flame_tree, calling `collect_self_change!`. -""" -function iterate_self_change!(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, tracked_list::Dict) - - if isempty(flame_tree.children) - child_sum = 0 - collect_self_change!(flame_tree, child_sum, tracked_list) - else - child_sum = sum(map(x -> x.count, flame_tree.children)) - collect_self_change!(flame_tree, child_sum, tracked_list) - for sf in flame_tree.children - iterate_self_change!(sf, tracked_list) - - end - end - return flame_tree -end - -""" - collect_self_change!(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, child_sum::Int, tracked_list::Dict) - -Collects information on the change in allocation by individual functions -(minus the allocation of their children) between the current and the reference jobs. -""" -function collect_self_change!(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, child_sum::Int, tracked_list::Dict) - func = string(flame_tree.func) - line = string(flame_tree.line) - file = string(flame_tree.file) - - func_sign = "self_count_$func.$file.$line" - current_self_count = flame_tree.count - child_sum - old_self_count = func_sign in keys(tracked_list) ? tracked_list[func_sign] : -999 * flame_tree.count # if not found, this will be marked untracked - - overall_count_change = deepcopy(flame_tree.count_change) - flame_tree.count_change = (current_self_count - old_self_count) - - (overall_count_change, old_self_count) = - old_self_count < 0 ? ("untracked", "untracked") : (overall_count_change, old_self_count) - - flame_tree.countLabel = - string(flame_tree.count) * - " samples \n ∑child_count = $child_sum counts \n Δcount = $overall_count_change counts \n Δself_count = $current_self_count - $old_self_count =" * - string(flame_tree.count_change) * - " counts \n " -end - -""" - log_counts(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, ct = 0, dict = Dict{String, Float64}()) - -Iterate over all children of a stack tree and save their names ("\$func.\$file.\$line") and -corresponding count values in a Dict. -""" -function log_counts(flame_tree::Main.ProfileCanvasDiff.ProfileFrame, ct = 0, dict = Dict{String, Float64}()) - ct += 1 - line = flame_tree.line - file = flame_tree.file - func = flame_tree.func - push!(dict, "$func.$file.$line" => flame_tree.count) - - if isempty(flame_tree.children) - # 0 upstream contribution if end child - push!(dict, "self_count_$func.$file.$line" => flame_tree.count) - - else - child_sum = sum(map(x -> x.count, flame_tree.children)) - push!(dict, "self_count_$func.$file.$line" => flame_tree.count - child_sum) - for sf in flame_tree.children - log_counts(sf, ct, dict) - end - end - return dict -end - -function stackframetree(data_u64, lidict; thread = nothing, combine = true, recur = :off) - root = combine ? Profile.StackFrameTree{StackTraces.StackFrame}() : Profile.StackFrameTree{UInt64}() - if VERSION >= v"1.8.0-DEV.460" - thread = thread == "all" ? (1:Threads.nthreads()) : thread - root, _ = Profile.tree!(root, data_u64, lidict, true, recur, thread) - else - root = Profile.tree!(root, data_u64, lidict, true, recur) - end - if !isempty(root.down) - root.count = sum(pr -> pr.second.count, root.down) - end - - return root -end - -function status(sf::StackTraces.StackFrame) - st = UInt8(0) - if sf.from_c && (sf.func === :jl_invoke || sf.func === :jl_apply_generic || sf.func === :ijl_apply_generic) - st |= ProfileFrameFlag.RuntimeDispatch - end - if sf.from_c && startswith(String(sf.func), "jl_gc_") - st |= ProfileFrameFlag.GCEvent - end - if !sf.from_c && sf.func === :eval_user_input && endswith(String(sf.file), "REPL.jl") - st |= ProfileFrameFlag.REPL - end - if !sf.from_c && occursin("./compiler/", String(sf.file)) - st |= ProfileFrameFlag.Compilation - end - if !sf.from_c && occursin("task.jl", String(sf.file)) - st |= ProfileFrameFlag.TaskEvent - end - return st -end - -function status(node::Profile.StackFrameTree, C::Bool) - st = status(node.frame) - C && return st - # If we're suppressing C frames, check all C-frame children - for child in values(node.down) - child.frame.from_c || continue - st |= status(child, C) - end - return st -end - -function add_child(graph::ProfileFrame, node, C::Bool; tracked_list = Dict{String, Int}(;)) - name = string(node.frame.file) - func = string(node.frame.func) - line = string(node.frame.line) - file = basename(string(node.frame.file)) - func_sign = "$func.$file.$line" - - if func == "" - func = "unknown" - end - - old_count = func_sign in keys(tracked_list) ? tracked_list[func_sign] : 999 - current_count = Float64(node.count) - - frame = ProfileFrame( - func, - basename(name), - name, - node.frame.line, - node.count, - missing, - status(node, C), - missing, - ProfileFrame[], - current_count - Float64(old_count), - ) - - push!(graph.children, frame) - - return frame -end - -function make_tree(graph, node::Profile.StackFrameTree; C = false, tracked_list = Dict{String, Int}(;)) - for child_node in sort!(collect(values(node.down)); rev = true, by = node -> node.count) - # child not a hidden frame - if C || !child_node.frame.from_c - child = add_child(graph, child_node, C, tracked_list = tracked_list) - make_tree(child, child_node; C = C, tracked_list = tracked_list) - else - make_tree(graph, child_node, tracked_list = tracked_list) - end - end - - return graph -end - -""" - @profview f(args...) [C = false] - -Clear the Profile buffer, profile `f(args...)`, and view the result graphically. - -The default of `C = false` will only show Julia frames in the profile graph. -""" -macro profview(ex, args...) - return quote - Profile.clear() - Profile.@profile $(esc(ex)) - view(; $(esc.(args)...)) - end -end - -## Allocs - -""" - @profview_allocs f(args...) [sample_rate=0.0001] [C=false] - -Clear the Profile buffer, profile `f(args...)`, and view the result graphically. -""" -macro profview_allocs(ex, args...) - sample_rate_expr = :(sample_rate = 0.0001) - for arg in args - if Meta.isexpr(arg, :(=)) && length(arg.args) > 0 && arg.args[1] === :sample_rate - sample_rate_expr = arg - end - end - if isdefined(Profile, :Allocs) - return quote - Profile.Allocs.clear() - Profile.Allocs.@profile $(esc(sample_rate_expr)) $(esc(ex)) - view_allocs() - end - else - return :(@error "This version of Julia does not support the allocation profiler.") - end -end - -function view_allocs(_results = Profile.Allocs.fetch(); C = false) - results = _results::Profile.Allocs.AllocResults - allocs = results.allocs - - allocs_root = ProfileFrame("root", "", "", 0, 0, missing, 0x0, missing, ProfileFrame[], 0) - counts_root = ProfileFrame("root", "", "", 0, 0, missing, 0x0, missing, ProfileFrame[], 0) - for alloc in allocs - this_allocs = allocs_root - this_counts = counts_root - - for sf in Iterators.reverse(alloc.stacktrace) - if !C && sf.from_c - continue - end - file = string(sf.file) - this_counts′ = ProfileFrame( - string(sf.func), - basename(file), - file, - sf.line, - 0, - missing, - 0x0, - missing, - ProfileFrame[], - 0, - ) - ind = findfirst( - c -> (c.func == this_counts′.func && c.path == this_counts′.path && c.line == this_counts′.line), - this_allocs.children, - ) - - this_counts, this_allocs = if ind === nothing - push!(this_counts.children, this_counts′) - this_allocs′ = deepcopy(this_counts′) - push!(this_allocs.children, this_allocs′) - - (this_counts′, this_allocs′) - else - (this_counts.children[ind], this_allocs.children[ind]) - end - this_allocs.count += alloc.size - this_allocs.countLabel = memory_size(this_allocs.count) - this_counts.count += 1 - this_allocs.count_change = 0.6 - end - - alloc_type = replace(string(alloc.type), "Profile.Allocs." => "") - ind = findfirst(c -> (c.func == alloc_type), this_allocs.children) - if ind === nothing - push!( - this_allocs.children, - ProfileFrame( - alloc_type, - "", - "", - 0, - this_allocs.count, - memory_size(this_allocs.count), - ProfileFrameFlag.GCEvent, - missing, - ProfileFrame[], - 0.6, - ), - ) - push!( - this_counts.children, - ProfileFrame(alloc_type, "", "", 0, 1, missing, ProfileFrameFlag.GCEvent, missing, ProfileFrame[], 1), - ) - else - this_counts.children[ind].count += 1 - this_allocs.children[ind].count += alloc.size - this_allocs.children[ind].countLabel = memory_size(this_allocs.children[ind].count) - this_allocs.children[ind].count_change = 0.6 - end - - counts_root.count += 1 - allocs_root.count += alloc.size - allocs_root.countLabel = memory_size(allocs_root.count) - allocs_root.count_change = 0.6 - end - - d = Dict{String, ProfileFrame}("size" => allocs_root, "count" => counts_root) - - return ProfileData(d, "Allocation") -end - -const prefixes = ["bytes", "KB", "MB", "GB", "TB", "PB", "EB", "ZB", "YB"] -function memory_size(size) - i = 1 - while size > 1000 && i + 1 < length(prefixes) - size /= 1000 - i += 1 - end - return string(round(Int, size), " ", prefixes[i]) -end - - -end diff --git a/perf/ProfileViewerDiff.js b/perf/ProfileViewerDiff.js deleted file mode 100644 index b7464a6973..0000000000 --- a/perf/ProfileViewerDiff.js +++ /dev/null @@ -1,699 +0,0 @@ -/* temporarily copied and modified from https://github.com/pfitzseb/jl-profile.js/blob/a13f2ef7852bc1782ec180e3efd4ccef2da7ba6d/dist/profile-viewer.js */ -export class ProfileViewer { - constructor(element, data, selectorLabel) { - this.selections = []; - this.offsetX = 0; - this.offsetY = 0; - this.isWheeling = false; - this.canWheelDown = true; - this.scrollPosition = 0; - this.isResizing = false; - this.isDocumentScrolling = false; - this.isMouseMove = false; - this.scale = window.devicePixelRatio; - this.borderWidth = 2; - this.padding = 2; - this.fontConfig = '10px sans-serif'; - this.borderColor = '#fff'; - this.selectorLabel = 'Thread'; - this.boxHeight = 24; - this.destroyed = false; - if (typeof element === 'string') { - element = document.querySelector(element); - } - if (!element) { - throw new Error('Invalid parent element specified.'); - } - this.container = element; - if (selectorLabel) { - this.selectorLabel = selectorLabel; - } - this.insertDOM(); - this.getStyles(); - this.registerResizeObserver(); - this.registerScrollListener(); - if (data) { - this.setData(data); - } - this.getOffset(); - } - /** - * Remove event listeners and added child elements. The global stylesheet - * is only removed if this is the last reference to it (i.e. there are no - * other not-destroyed ProfileViewer instances in the DOM). - */ - destroy() { - this.destroyed = true; - this.resizeObserver.disconnect(); - if (this.scrollHandler) { - document.removeEventListener('scroll', this.scrollHandler); - } - if (this.stylesheet && parseInt(this.stylesheet.dataset.references) === 0) { - document.head.removeChild(this.stylesheet); - } - while (this.container.firstChild) { - this.container.removeChild(this.container.lastChild); - } - } - setData(data) { - if (this.destroyed) { - console.error('This profile viewer is destroyed.'); - return; - } - if (!data) { - this.data = data; - this.clear(); - return; - } - const selections = Object.keys(data); - selections.sort((a, b) => { - if (a === 'all') { - return -1; - } - if (b === 'all') { - return 1; - } - if (a < b) { - return -1; - } - if (a > b) { - return 1; - } - return 0; - }); - this.data = data; - this.selections = selections; - this.currentSelection = this.selections[0]; - this.activeNode = this.data[this.currentSelection]; - this.updateFilter(); - this.redraw(); - } - setSelectorLabel(label) { - this.selectorLabel = label; - this.selectorLabelElement.innerText = `${label}: `; - } - registerCtrlClickHandler(f) { - this.ctrlClickHandler = f; - } - /** - * @deprecated Use `registerSelectionHandler` instead. - */ - registerThreadSelectorHandler(f) { - this.selectionHandler = f; - } - registerSelectionHandler(f) { - this.selectionHandler = f; - } - registerScrollListener() { - document.addEventListener('scroll', this.scrollHandler); - } - clear() { - this.selections = []; - this.currentSelection = ''; - this.activeNode = undefined; - this.canvasCtx.clearRect(0, 0, this.canvasWidth, this.canvasHeight); - this.hoverCanvasCtx.clearRect(0, 0, this.canvasWidth, this.canvasHeight); - } - isDestroyed() { - return this.destroyed; - } - getStyles() { - var _a, _b, _c; - const style = window.getComputedStyle(this.container, null); - const fontFamily = style.fontFamily; - const fontSize = style.fontSize; - this.fontConfig = - parseInt(fontSize !== null && fontSize !== void 0 ? fontSize : '12px', 10) * this.scale + - 'px ' + - (fontFamily !== null && fontFamily !== void 0 ? fontFamily : 'sans-serif'); - this.borderColor = (_a = style.color) !== null && _a !== void 0 ? _a : '#000'; - this.canvasCtx.font = this.fontConfig; - this.canvasCtx.textBaseline = 'middle'; - const textMetrics = this.canvasCtx.measureText('ABCDEFGHIJKLMNOPQRSTUVWXYZ[\\]*\'"^_`abcdefghijklmnopqrstuvwxyz'); - this.boxHeight = Math.ceil((((_b = textMetrics.fontBoundingBoxDescent) !== null && _b !== void 0 ? _b : textMetrics.actualBoundingBoxDescent) + - ((_c = textMetrics.fontBoundingBoxAscent) !== null && _c !== void 0 ? _c : textMetrics.actualBoundingBoxAscent) + - 2 * this.borderWidth + - 2 * this.padding) * - this.scale); - if (this.activeNode) { - this.redraw(); - } - } - redraw() { - this.canWheelDown = false; - this.canvasCtx.clearRect(0, 0, this.canvasWidth, this.canvasHeight); - this.clearHover(); - this.drawGraph(this.activeNode, this.canvasWidth, this.canvasHeight, 0, this.scrollPosition); - } - insertDOM() { - this.insertStylesheet(); - this.canvas = document.createElement('canvas'); - this.canvas.classList.add('__profiler-canvas'); - this.canvasCtx = this.canvas.getContext('2d'); - this.hoverCanvas = document.createElement('canvas'); - this.hoverCanvas.classList.add('__profiler-hover-canvas'); - this.hoverCanvasCtx = this.hoverCanvas.getContext('2d'); - const canvasContainer = document.createElement('div'); - canvasContainer.classList.add('__profiler-canvas-container'); - canvasContainer.appendChild(this.canvas); - canvasContainer.appendChild(this.hoverCanvas); - canvasContainer.appendChild(this.createTooltip()); - this.container.appendChild(this.createFilterContainer()); - this.container.appendChild(canvasContainer); - this.canvas.addEventListener('wheel', (ev) => { - if (!this.activeNode) { - return; - } - if (ev.deltaY > 0 && !this.canWheelDown) { - return; - } - if (ev.deltaY < 0 && this.scrollPosition === 0) { - if (-ev.deltaY > this.boxHeight) { - const parent = this.findParentNode(this.activeNode); - if (parent) { - ev.preventDefault(); - ev.stopPropagation(); - this.clearHover(); - this.activeNode = parent; - this.redraw(); - } - return; - } - } - ev.preventDefault(); - ev.stopPropagation(); - if (!this.isWheeling) { - window.requestAnimationFrame(() => { - this.scrollPosition = Math.min(0, this.scrollPosition - ev.deltaY); - this.redraw(); - this.isWheeling = false; - }); - this.isWheeling = true; - } - }); - this.canvas.addEventListener('mousemove', (ev) => { - if (!this.isMouseMove && this.activeNode) { - window.requestAnimationFrame(() => { - // XXX: this is bad - this.getOffset(); - const mouseX = ev.clientX - this.offsetX; - const mouseY = ev.clientY - this.offsetY; - this.hoverCanvasCtx.clearRect(0, 0, this.canvasWidth, this.canvasHeight); - const didDraw = this.drawHover(this.activeNode, this.scale * mouseX, this.scale * mouseY); - if (didDraw) { - if (mouseX > this.canvasWidthCSS / 2) { - this.tooltipElement.style.right = - this.canvasWidthCSS - mouseX + 10 + 'px'; - this.tooltipElement.style.left = 'unset'; - } - else { - this.tooltipElement.style.right = 'unset'; - this.tooltipElement.style.left = mouseX + 10 + 'px'; - } - if (mouseY > this.canvasHeightCSS / 2) { - this.tooltipElement.style.bottom = - this.canvasHeightCSS - mouseY + 10 + 'px'; - this.tooltipElement.style.top = 'unset'; - } - else { - this.tooltipElement.style.bottom = 'unset'; - this.tooltipElement.style.top = mouseY + 10 + 'px'; - } - this.tooltipElement.style.display = 'block'; - } - else { - this.tooltipElement.style.display = 'none'; - } - this.isMouseMove = false; - }); - this.isMouseMove = true; - } - }); - this.canvas.addEventListener('click', (ev) => { - if (!this.activeNode) { - return; - } - ev.preventDefault(); - ev.stopPropagation(); - this.getOffset(); - const mouseX = this.scale * (ev.clientX - this.offsetX); - const mouseY = this.scale * (ev.clientY - this.offsetY); - if (ev.ctrlKey || ev.metaKey) { - this.runOnNodeAtMousePosition(this.activeNode, mouseX, mouseY, (node) => { - if (this.ctrlClickHandler) { - this.ctrlClickHandler(node); - } - }); - } - else { - if (this.zoomInOnNode(this.activeNode, mouseX, mouseY)) { - this.scrollPosition = 0; - this.redraw(); - } - else if (ev.detail === 2) { - // reset on double-click - this.resetView(); - } - } - }); - } - resetView() { - this.activeNode = this.data[this.currentSelection]; - this.scrollPosition = 0; - this.redraw(); - } - insertStylesheet() { - const stylesheet = document.querySelector('#__profiler_stylesheet'); - if (stylesheet) { - stylesheet.dataset.references = (parseInt(stylesheet.dataset.references) + 1).toString(); - this.stylesheet = stylesheet; - } - else { - this.stylesheet = document.createElement('style'); - this.stylesheet.setAttribute('id', '__profiler-stylesheet'); - this.stylesheet.dataset.references = '0'; - this.stylesheet.innerText = ` - .__profiler-canvas { - z-index: 0; - position: absolute; - width: 100%; - } - .__profiler-canvas-container { - width: 100%; - height: 100%; - position: relative; - } - .__profiler-hover-canvas { - z-index: 1; - position: absolute; - pointer-events: none; - width: 100%; - } - .__profiler-tooltip { - z-index: 2; - display: none; - position: absolute; - background-color: #ddd; - border: 1px solid black; - padding: 5px 10px; - pointer-events: none; - max-width: 45%; - overflow: hidden; - } - .__profiler-tooltip > div { - line-break: anywhere; - } - .__profiler-filter { - height: 30px; - padding: 2px 16px; - margin: 0; - box-sizing: border-box; - border-bottom: 1px solid #444; - user-select: none; - } - .__profiler-reset { - float: right; - } - `; - document.head.appendChild(this.stylesheet); - } - } - createTooltip() { - this.tooltipElement = document.createElement('div'); - this.tooltipElement.classList.add('__profiler-tooltip'); - this.tooltip = { - count: document.createElement('span'), - percentage: document.createElement('span'), - function: document.createElement('code'), - file: document.createElement('a'), - flags: document.createElement('span'), - }; - this.tooltip.function.classList.add('fname'); - const rows = [ - [this.tooltip.function], - [ - this.tooltip.count, - document.createTextNode(' ('), - this.tooltip.percentage, - document.createTextNode(') '), - ], - [this.tooltip.file], - [this.tooltip.flags], - ]; - for (const row of rows) { - const rowContainer = document.createElement('div'); - for (const col of row) { - rowContainer.appendChild(col); - } - this.tooltipElement.appendChild(rowContainer); - } - this.tooltip['ctrlClickHint'] = document.createElement('small'); - this.tooltipElement.appendChild(this.tooltip['ctrlClickHint']); - this.container.appendChild(this.tooltipElement); - return this.tooltipElement; - } - createFilterContainer() { - this.filterContainer = document.createElement('div'); - this.filterContainer.classList.add('__profiler-filter'); - this.selectorLabelElement = document.createElement('label'); - this.selectorLabelElement.innerText = `${this.selectorLabel}: `; - this.filterContainer.appendChild(this.selectorLabelElement); - this.filterInput = document.createElement('select'); - this.filterInput.addEventListener('change', () => { - this.currentSelection = this.filterInput.value; - if (this.selectionHandler) { - this.selectionHandler(this.currentSelection); - } - this.resetView(); - }); - this.filterContainer.appendChild(this.filterInput); - const resetter = document.createElement('button'); - resetter.classList.add('__profiler-reset'); - resetter.innerText = 'reset view'; - resetter.addEventListener('click', () => { - this.resetView(); - }); - this.filterContainer.appendChild(resetter); - return this.filterContainer; - } - updateFilter() { - while (this.filterInput.firstChild) { - this.filterInput.removeChild(this.filterInput.lastChild); - } - for (const selection of this.selections) { - const entry = document.createElement('option'); - entry.innerText = selection; - entry.setAttribute('value', selection); - this.filterInput.appendChild(entry); - } - } - registerResizeObserver() { - this.resizeObserver = new ResizeObserver((entries) => { - if (!this.isResizing) { - for (const entry of entries) { - if (entry.target === this.container) { - window.requestAnimationFrame(() => { - if (window.devicePixelRatio !== this.scale) { - this.scale = window.devicePixelRatio; - this.getStyles(); - } - this.canvasWidth = Math.round(entry.contentRect.width * this.scale); - this.canvasHeight = Math.round((entry.contentRect.height - 30) * this.scale); - this.canvasWidthCSS = entry.contentRect.width; - this.canvasHeightCSS = entry.contentRect.height; - this.canvas.width = this.canvasWidth; - this.canvas.height = this.canvasHeight; - this.hoverCanvas.width = this.canvasWidth; - this.hoverCanvas.height = this.canvasHeight; - this.redraw(); - this.isResizing = false; - }); - } - } - this.isResizing = true; - } - }); - this.resizeObserver.observe(this.container); - } - scrollHandler(e) { - if (!this.isDocumentScrolling) { - window.requestAnimationFrame(() => { - this.getOffset(); - this.isDocumentScrolling = false; - }); - this.isDocumentScrolling = true; - } - } - getOffset() { - const box = this.canvas.getBoundingClientRect(); - this.offsetX = box.left; - this.offsetY = box.top; - } - // hash of function named, used to seed PRNG - nodeHash(node) { - const hashString = node.file + node.line; - let hash = 0; - for (let i = 0; i < hashString.length; i++) { - const char = hashString.charCodeAt(i); - hash = (hash << 5) - hash + char; - hash = hash & hash; - } - return hash; - } - // Simple PRNG from https://stackoverflow.com/a/47593316/12113178 - mulberry32(a) { - return function () { - let t = (a += 0x6d2b79f5); - t = Math.imul(t ^ (t >>> 15), t | 1); - t ^= t + Math.imul(t ^ (t >>> 7), t | 61); - return ((t ^ (t >>> 14)) >>> 0) / 4294967296; - }; - } - // modifies the normal color by three stable random values drawn from a - // PRNG seeded by the node hash - modifyNodeColorByHash(r, g, b, hash, range = 255) { - const rng = this.mulberry32(hash); - if (r === g && g === b) { - r = g = b = Math.min(255, Math.max(0, r + (rng() - 0.5) * range)); - } - else { - r = Math.min(range, Math.max(0, r + (rng() - 0.5) * range)); - g = Math.min(range, Math.max(0, g + (rng() - 0.5) * range)); - b = Math.min(range, Math.max(0, b + (rng() - 0.5) * range)); - } - return { - r, - g, - b, - }; - } - modifyNodeColorByCount(r, g, b, count, range = 255) { - r = Math.min(255, g * (1-count) ); - g = Math.min(255, g * (1-count) ); - b = Math.min(255, b * (1-count) ); - return { - r, - g, - b, - }; - } - nodeColors(node, hash) { - let r, g, b; - let a = 1; - /** - if (node.flags & 0x01) { - // runtime-dispatch - ; - ({ r, g, b } = this.modifyNodeColorByHash(204, 103, 103, hash, 20)); - } - else if (node.flags & 0x02) { - // gc - ; - ({ r, g, b } = this.modifyNodeColorByHash(204, 153, 68, hash, 20)); - } - else if (node.flags & 0x08) { - // compilation? - ; - ({ r, g, b } = this.modifyNodeColorByHash(100, 100, 100, hash, 60)); - } - else { - // default - ; - ({ r, g, b } = this.modifyNodeColorByHash(64, 99, 221, hash)); - } - if (node.flags & 0x10) { - // C frame - a = 0.5; - } - */ - - // if (node.count > 0) { - // better performance - ; - if (node.count_change / node.count > 100) { - ({ r, g, b } = this.modifyNodeColorByCount(0, 0, 0, node.count_change / node.count )); - } - else if (node.count_change/ node.count > 0) { - ({ r, g, b } = this.modifyNodeColorByCount(255, 255, 255, node.count_change / node.count )); - r = 255 - 20; - g = g - 20; - b = b - 20; - - } - else { - ({ r, g, b } = this.modifyNodeColorByCount(255, 255, 255, - node.count_change / node.count )); - b = 255 - 20; - g = g - 20; - r = r - 20; - } - - return { - fill: 'rgba(' + r + ',' + g + ',' + b + ',' + a + ')', - stroke: 'rgba(' + 0.8 * r + ',' + 0.8 * g + ',' + 0.8 * b + ',' + a + ')', - text: 'rgba(255, 255, 255, ' + Math.max(0.6, a) + ')', - }; - } - drawGraph(node, width, height, x, y) { - if (!node) { - return; - } - this.canvasCtx.font = this.fontConfig; - this.canvasCtx.textBaseline = 'middle'; - if (y + this.boxHeight >= 0) { - const hash = this.nodeHash(node); - const { fill, stroke, text } = this.nodeColors(node, hash); - this.drawNode(node.func, fill, stroke, text, width, x, y); - } - node.pos = { - x, - y, - width, - height: this.boxHeight, - }; - if (y + this.boxHeight <= this.canvasHeight) { - for (const child of node.children) { - const w = width * (child.fraction || child.count / node.count); - this.drawGraph(child, w, height, x, y + this.boxHeight); - x += w; - } - } - else { - this.canWheelDown = true; - } - } - drawNode(text, color, bColor, textColor, width, x, y) { - if (width < 1) { - width = 1; - } - const drawBorder = false; //width > 20*this.borderWidth; - this.canvasCtx.fillStyle = color; - this.canvasCtx.beginPath(); - this.canvasCtx.rect(x, y + this.borderWidth, width, this.boxHeight - this.borderWidth); - this.canvasCtx.closePath(); - this.canvasCtx.fill(); - if (drawBorder) { - this.canvasCtx.fillStyle = bColor; - this.canvasCtx.beginPath(); - this.canvasCtx.rect(x, y + this.borderWidth, this.borderWidth, this.boxHeight - this.borderWidth); - this.canvasCtx.closePath(); - this.canvasCtx.fill(); - } - const textWidth = width - 2 * this.padding - 2 * this.borderWidth; - if (textWidth > 10) { - this.canvasCtx.save(); - this.canvasCtx.beginPath(); - this.canvasCtx.rect(x + this.borderWidth + this.padding, y + this.borderWidth + this.padding, textWidth, this.boxHeight - this.borderWidth - 2 * this.padding); - this.canvasCtx.closePath(); - this.canvasCtx.clip(); - this.canvasCtx.fillStyle = textColor; - this.canvasCtx.fillText(text, x + this.borderWidth + this.padding, y + this.boxHeight / 2 + this.borderWidth); - this.canvasCtx.restore(); - } - } - updateTooltip(node) { - this.tooltip.function.innerText = node.func; - if (node.file || node.line > 0) { - this.tooltip.file.innerText = node.file + ':' + node.line; - } - else { - this.tooltip.file.innerText = ''; - } - this.tooltip.count.innerText = (node.countLabel || (node.count + ' samples')).toString(); - let percentageText = ((100 * node.count) / - this.data[this.currentSelection].count).toFixed() + '% of root'; - if (this.activeNode.count != this.data[this.currentSelection].count) { - percentageText = percentageText + ', ' + ((100 * node.count) / - this.activeNode.count).toFixed() + '% of selection'; - } - this.tooltip.percentage.innerText = percentageText; - const flags = []; - if (node.flags & 0x01) { - flags.push('runtime-dispatch'); - } - if (node.flags & 0x02) { - flags.push('GC'); - } - if (node.flags & 0x08) { - flags.push('compilation'); - } - if (node.flags & 0x10) { - flags.push('task'); - } - let flagString = ''; - if (flags.length > 0) { - flagString = 'Flags: ' + flags.join(', '); - } - this.tooltip.flags.innerText = flagString; - if (this.ctrlClickHandler) { - this.tooltip['ctrlClickHint'].innerText = - 'Ctrl/Cmd+Click to open this file'; - } - } - drawHoverNode(node) { - this.hoverCanvasCtx.fillStyle = this.borderColor; - this.hoverCanvasCtx.fillRect(node.pos.x, node.pos.y + this.borderWidth, Math.max(1, node.pos.width), node.pos.height - this.borderWidth); - const innerWidth = node.pos.width - this.borderWidth * 2 * this.scale; - if (innerWidth > 1) { - this.hoverCanvasCtx.clearRect(node.pos.x + this.borderWidth * this.scale, node.pos.y + 2 * this.borderWidth * this.scale, innerWidth, node.pos.height - this.borderWidth * 3 * this.scale); - } - this.updateTooltip(node); - } - clearHover() { - this.hoverCanvasCtx.clearRect(0, 0, this.canvasWidth, this.canvasHeight); - this.tooltipElement.style.display = 'none'; - } - drawHover(node, mouseX, mouseY) { - let found = false; - this.runOnNodeAtMousePosition(node, mouseX, mouseY, (node) => { - this.drawHoverNode(node); - found = true; - }); - return found; - } - runOnNodeAtMousePosition(root, x, y, f) { - if (x >= Math.floor(root.pos.x) && - x <= Math.ceil(root.pos.x + root.pos.width) && - y >= root.pos.y) { - if (y <= root.pos.y + root.pos.height) { - f(root); - return true; - } - else { - for (const child of root.children) { - if (this.runOnNodeAtMousePosition(child, x, y, f)) { - return true; - } - } - } - } - return false; - } - zoomInOnNode(node, mouseX, mouseY) { - let found = false; - this.runOnNodeAtMousePosition(node, mouseX, mouseY, (node) => { - this.clearHover(); - this.activeNode = node; - found = true; - }); - return found; - } - // ideally this wouldn't require tree traversal at all - findParentNode(target, current = null) { - if (current === null) { - current = this.data[this.currentSelection]; - } - for (const child of current.children) { - if (child === target) { - return current; - } - else { - const found = this.findParentNode(target, child); - if (found) { - return found; - } - } - } - return null; - } -} -//# sourceMappingURL=profile-viewer.js.map \ No newline at end of file diff --git a/perf/flame.jl b/perf/flame.jl deleted file mode 100644 index f849e82af4..0000000000 --- a/perf/flame.jl +++ /dev/null @@ -1,119 +0,0 @@ -# flame.jl: provides allocation breakdown for individual backtraces for single-process unthredded runs -# and check for overall allocation limits based on previous runs -# copied and modified from `ClimaAtmos/perf` -# -# To run this, add ProfileCanvas to the ClimaEarth environment - -import Test: @test, @testset -import ClimaAtmos as CA -import Profile -import ProfileCanvas -import YAML - -cc_dir = joinpath(dirname(@__DIR__)); -config_dir = joinpath(cc_dir, "config", "perf_configs"); -include(joinpath(cc_dir, "experiments", "ClimaEarth", "cli_options.jl")); - -# assuming a common driver for all tested runs -filename = joinpath(cc_dir, "experiments", "ClimaEarth", "run_amip.jl") - -# currently tested jobs and their allowed allocation limits -allocs_limit = Dict() -allocs_limit["perf_default_unthreaded"] = 8638304 -allocs_limit["perf_coarse_single_ft64"] = 18280800 -allocs_limit["perf_target_amip_n32_shortrun"] = 172134848 - -# number of time steps used for profiling -const n_samples = 2 - -# import parsed command line arguments -global parsed_args = parse_commandline(argparse_settings()) - -# select the configuration file and extract the job ID -config_file = - parsed_args["config_file"] = - isinteractive() ? "../config/perf_configs/perf_default_unthreaded.yml" : parsed_args["config_file"] -job_id = parsed_args["job_id"] - -# import config setup -config_dict = YAML.load_file(config_file) - -# global scope needed to recognize this definition in the coupler driver -parsed_args = merge(config_dict, parsed_args) - -# disable threading -parsed_args["enable_threading"] = false - -# flag to split coupler init from its solve -ENV["CI_PERF_SKIP_COUPLED_RUN"] = true - -@info job_id - -# initialize the coupler -try - include(filename) -catch err - if err.error !== :exit_profile_init - rethrow(err.error) - end -end - -##### -##### Profiling -##### - -function step_coupler!(cs, n_samples) - cs.tspan[1] = cs.model_sims.atmos_sim.integrator.t - cs.tspan[2] = cs.tspan[1] + n_samples * cs.Δt_cpl - solve_coupler!(cs) -end - -# compile coupling loop first -step_coupler!(cs, n_samples) -Profile.clear_malloc_data() -Profile.clear() - -# profile the coupling loop -prof = Profile.@profile begin - step_coupler!(cs, n_samples) -end - -# produce flamegraph -if haskey(ENV, "BUILDKITE_COMMIT") || haskey(ENV, "BUILDKITE_BRANCH") - output_dir = "perf/output/$job_id/" - mkpath(output_dir) - ProfileCanvas.html_file(joinpath(output_dir, "flame.html")) -else - ProfileCanvas.view(Profile.fetch()) -end - -##### -##### Allocation tests -##### - -# We're grouping allocation tests here for convenience. - -buffer = 1.4 # increase slightly for (nondeterministic) threaded runs - -# profile the coupling loop -allocs = @allocated step_coupler!(cs, n_samples) -@timev step_coupler!(cs, n_samples) - -@info "`allocs ($job_id)`: $(allocs)" - -if allocs < allocs_limit[job_id] * buffer - @info "TODO: lower `allocs_limit[$job_id]` to: $(allocs)" -end - -Δallocs = allocs / allocs_limit[job_id] -@info "Allocation change (allocs/allocs_limit): $Δallocs" -percent_alloc_change = (1 - Δallocs) * 100 -if percent_alloc_change ≥ 0 - @info "Allocations improved by: $percent_alloc_change %" -else - @info "Allocations worsened by: $percent_alloc_change %" -end - -@testset "Allocations limit" begin - @test allocs ≤ allocs_limit[job_id] * buffer -end diff --git a/perf/flame_diff.jl b/perf/flame_diff.jl deleted file mode 100644 index 84b3b52327..0000000000 --- a/perf/flame_diff.jl +++ /dev/null @@ -1,133 +0,0 @@ -# flame_diff.jl: provides allocation breakdown for individual backtraces for single-process unthredded runs -# and check for fractional change in allocation compared to the last staged run - -# The JSON package is needed to run this - -import ClimaAtmos as CA -import Profile -import Base: view -include("ProfileCanvasDiff.jl") -import .ProfileCanvasDiff -import JLD2 -import YAML - -if isinteractive() - buildkite_cc_dir = "." - scratch_cc_dir = "." - build_path = "0" -else - buildkite_branch = ENV["BUILDKITE_BRANCH"] - buildkite_commit = ENV["BUILDKITE_COMMIT"] - buildkite_number = ENV["BUILDKITE_BUILD_NUMBER"] - buildkite_build_path = ENV["BUILDKITE_BUILD_PATH"] - buildkite_pipeline_slug = ENV["BUILDKITE_PIPELINE_SLUG"] - buildkite_cc_dir = "/central/scratch/esm/slurm-buildkite/climacoupler-ci/" - scratch_cc_dir = joinpath(buildkite_build_path, buildkite_pipeline_slug) - build_path = - joinpath(buildkite_build_path, buildkite_pipeline_slug, buildkite_number, buildkite_pipeline_slug, "perf/") -end - -cwd = pwd() -@info "build_path is: $build_path" - -cc_dir = joinpath(dirname(@__DIR__)); -config_dir = joinpath(cc_dir, "config", "perf_configs"); -include(joinpath(cc_dir, "experiments", "ClimaEarth", "cli_options.jl")); - -# assuming a common driver for all tested runs -filename = joinpath(cc_dir, "experiments", "ClimaEarth", "run_amip.jl") - -# number of time steps used for profiling -n_samples = 2 - -# import parsed command line arguments -parsed_args = parse_commandline(argparse_settings()) - -# select the configuration file and extract the job ID -config_file = - parsed_args["config_file"] = - isinteractive() ? "../config/perf_configs/perf_default_unthreaded.yml" : parsed_args["config_file"] -job_id = parsed_args["job_id"] - -# import config setup -config_dict = YAML.load_file(config_file) - -# global scope needed to recognize this definition in the coupler driver -parsed_args = merge(config_dict, parsed_args) - -# disable threading -parsed_args["enable_threading"] = false - -# flag to split coupler init from its solve -ENV["CI_PERF_SKIP_COUPLED_RUN"] = true - -@info job_id - -function step_coupler!(cs, n_samples) - cs.tspan[1] = cs.model_sims.atmos_sim.integrator.t - cs.tspan[2] = cs.tspan[1] + n_samples * cs.Δt_cpl - solve_coupler!(cs) -end - -try # initialize the coupler - ENV["CI_PERF_SKIP_COUPLED_RUN"] = true - include(filename) -catch err - if err.error !== :exit_profile_init - rethrow(err.error) - end -end -##### -##### Profiling -##### - -# obtain the stacktree from the last saved file in `buildkite_cc_dir` -ref_file = joinpath(buildkite_cc_dir, "$job_id.jld2") - -if isfile(ref_file) - tracked_list = JLD2.load(ref_file) -else - tracked_list = Dict{String, Float64}() - @warn "FlameGraphDiff: No reference file: $ref_file found" -end - -# compile coupling loop first -step_coupler!(cs, n_samples) - -# clear compiler allocs -Profile.clear_malloc_data() -Profile.clear() - -# profile the coupling loop -prof = Profile.@profile begin - step_coupler!(cs, n_samples) -end - -# produce flamegraph with colors highlighting the allocation differences relative to the last saved run -# profile_data -if haskey(ENV, "BUILDKITE_COMMIT") || haskey(ENV, "BUILDKITE_BRANCH") - output_dir = "perf/output/$job_id" - mkpath(output_dir) - ProfileCanvasDiff.html_file( - joinpath(output_dir, "flame_diff.html"), - build_path = build_path, - tracked_list = tracked_list, - self_count = false, - ) - ProfileCanvasDiff.html_file( - joinpath(output_dir, "flame_diff_self_count.html"), - build_path = build_path, - tracked_list = tracked_list, - self_count = true, - ) -end - -# save (and reset) the stack tree if this is running on the `staging` branch -@info "This branch is: $buildkite_branch, commit $buildkite_commit" -profile_data, new_tracked_list = ProfileCanvasDiff.view(Profile.fetch(), tracked_list = tracked_list, self_count = true); -if buildkite_branch == "staging" - isfile(ref_file) ? - mv(ref_file, joinpath(scratch_cc_dir, "flame_reference_file.$job_id.$buildkite_commit.jld2"), force = true) : - nothing - JLD2.save(ref_file, new_tracked_list) # reset ref_file upon staging -end diff --git a/perf/flame_test.jl b/perf/flame_test.jl deleted file mode 100644 index 183269161f..0000000000 --- a/perf/flame_test.jl +++ /dev/null @@ -1,121 +0,0 @@ -# The JSON package is needed to run this - -import Test: @test, @testset -import Profile -import Base: view -include("ProfileCanvasDiff.jl") -import .ProfileCanvasDiff -import JLD2 - -if isinteractive() - buildkite_cc_dir = build_path = "." -else - buildkite_number = ENV["BUILDKITE_BUILD_NUMBER"] - buildkite_cc_dir = "/central/scratch/esm/slurm-buildkite/climacoupler-ci/" - build_path = "/central/scratch/esm/slurm-buildkite/climacoupler-ci/$buildkite_number/climacoupler-ci/perf/" -end - -output_dir = joinpath(buildkite_cc_dir, "test/") -mkpath(output_dir) - -# dummy functions to analyze -function cumsum_sqrt(x) - y = cumsum(x) - sqrt.(y) -end - -function get_y(x) - f = collect(1:1:10000) .* x - cumsum(f) -end - -function step_coupler!(n, y_all = []) - for i in collect(1:1:n) - y = get_y(i) - push!(y_all, y) - end - return y_all -end - -# init -step_coupler!(1) - -# clear compiler allocs -Profile.clear_malloc_data() -Profile.clear() - -# profile the coupling loop -prof = Profile.@profile begin - step_coupler!(100) -end - -# ref file -ref_file = joinpath(output_dir, "reference.jld2") -tracked_list = isfile(ref_file) ? JLD2.load(ref_file) : Dict{String, Float64}() - -# save ref file -profile_data, new_tracked_list = ProfileCanvasDiff.view(Profile.fetch(), tracked_list = tracked_list, self_count = true); - -JLD2.save(ref_file, new_tracked_list) # reset ref_file upon staging - - -""" - find_child(flame_tree, target_name; self_count = false) - -Helper function to find a particular flame tree node. -""" -function find_child(flame_tree, target_name; self_count = false) - - line = flame_tree.line - file = flame_tree.file - func = flame_tree.func - - node_name = "$func.$file.$line" - node_name = self_count ? "self_count_" * node_name : node_name - - if node_name == target_name - global out = flame_tree - else - if !(isempty(flame_tree.children)) - for sf in flame_tree.children - find_child(sf, target_name, self_count = self_count) - end - end - end - return @isdefined(out) && out -end - -@testset "flame diff tests" begin - # load the dictionary of tracked counts from the reference file - tracked_list = isfile(ref_file) ? JLD2.load(ref_file) : Dict{String, Float64}() - - test_func_name = "get_y.flame_test.jl.26" - - # test flame diff - tracked_list["$test_func_name"] = 100 # reference value for node count with child sum - profile_data, new_tracked_list = - ProfileCanvasDiff.view(Profile.fetch(), tracked_list = tracked_list, self_count = false) - node = find_child(profile_data.data["all"], test_func_name, self_count = false) - @test node.count_change == node.count - 100 - - # test flame diff with self_count - tracked_list["self_count_$test_func_name"] = 50 # reference value for node count w/o child sum - profile_data, new_tracked_list = - ProfileCanvasDiff.view(Profile.fetch(), tracked_list = tracked_list, self_count = true) - - node = find_child(profile_data.data["all"], test_func_name, self_count = false) - child_sum = sum(map(x -> x.count, node.children)) - @test node.count_change == (node.count - child_sum) - 50 - - # html_file test - ProfileCanvasDiff.html_file( - joinpath(output_dir, "flame_diff.html"), - build_path = build_path, - tracked_list = tracked_list, - self_count = false, - ) - - @test isfile(joinpath(output_dir, "flame_diff.html")) - rm(output_dir; recursive = true, force = true) - -end