diff --git a/configs/data/deepGO/deepgo_1_migrated_data.yml b/configs/data/deepGO/deepgo_1_migrated_data.yml new file mode 100644 index 00000000..0924e023 --- /dev/null +++ b/configs/data/deepGO/deepgo_1_migrated_data.yml @@ -0,0 +1,4 @@ +class_path: chebai.preprocessing.datasets.deepGO.go_uniprot.DeepGO1MigratedData +init_args: + go_branch: "MF" + max_sequence_length: 1002 diff --git a/configs/data/deepGO/deepgo_2_migrated_data.yml b/configs/data/deepGO/deepgo_2_migrated_data.yml new file mode 100644 index 00000000..1ed2ad09 --- /dev/null +++ b/configs/data/deepGO/deepgo_2_migrated_data.yml @@ -0,0 +1,4 @@ +class_path: chebai.preprocessing.datasets.deepGO.go_uniprot.DeepGO2MigratedData +init_args: + go_branch: "MF" + max_sequence_length: 1000 diff --git a/configs/data/deepGO/go250.yml b/configs/data/deepGO/go250.yml new file mode 100644 index 00000000..01e34aa4 --- /dev/null +++ b/configs/data/deepGO/go250.yml @@ -0,0 +1,3 @@ +class_path: chebai.preprocessing.datasets.go_uniprot.deepGO.GOUniProtOver250 +init_args: + go_branch: "BP" diff --git a/configs/data/deepGO/go50.yml b/configs/data/deepGO/go50.yml new file mode 100644 index 00000000..bee43773 --- /dev/null +++ b/configs/data/deepGO/go50.yml @@ -0,0 +1 @@ +class_path: chebai.preprocessing.datasets.deepGO.go_uniprot.GOUniProtOver50 diff --git a/configs/data/go250.yml b/configs/data/go250.yml deleted file mode 100644 index 5598495c..00000000 --- a/configs/data/go250.yml +++ /dev/null @@ -1,3 +0,0 @@ -class_path: chebai.preprocessing.datasets.go_uniprot.GOUniProtOver250 -init_args: - go_branch: "BP" diff --git a/configs/data/go50.yml b/configs/data/go50.yml deleted file mode 100644 index 2ed4d14c..00000000 --- a/configs/data/go50.yml +++ /dev/null @@ -1 +0,0 @@ -class_path: chebai.preprocessing.datasets.go_uniprot.GOUniProtOver50