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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(JI_across_topregs)
export(add_interaction_type)
export(add_type)
export(assign_epochs)
export(assign_epochs_simple)
export(biglist_compute_betweenness_degree)
export(caoGenes)
export(compileDynGenes)
export(compile_epochs)
export(compute_JI_topregs)
export(compute_betweenness_degree)
export(compute_frobenius_distance)
export(compute_pagerank)
export(cor_and_add_action)
export(crossweight)
export(crossweight_params)
export(define_epochs)
export(diffnet_community_detection)
export(dynamic_difference_network)
export(dynamic_shortest_path)
export(dynamic_shortest_path_multiple)
export(edge_uniqueness)
export(epochGRN)
export(findDynGenes)
export(find_communities)
export(find_cuts_by_clustering)
export(find_cuts_by_similarity)
export(find_targets)
export(grnKsmooth)
export(heatmap_by_treatment_group)
export(hm_dyn)
export(hm_dyn_clust)
export(hm_dyn_epoch)
export(loadDataFromLoom)
export(load_SP_effectors)
export(mean_module_expression)
export(mean_subnetwork_expression)
export(order_genes)
export(plotPairs)
export(plotRegulon)
export(plot_diffnet_detail)
export(plot_dyn_diffnet)
export(plot_dynamic_network)
export(plot_dynnet_detail)
export(plot_heatmap_by_treatment)
export(plot_targets)
export(plot_targets_and_regulators)
export(plot_targets_with_top_regulators)
export(plot_targets_with_top_regulators_detail)
export(plot_top_regulators)
export(reconstructGRN)
export(reconstructGRN_GENIE3)
export(sample_and_epoch_reconstruct)
export(score_targets)
export(split_epochs_by_group)
export(split_epochs_by_pseudotime)
export(static_shortest_path)
export(subnets)
export(tfnet_pagerank)
export(utils_loadObject)