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README

This is the official repository of the R package SELECT - Selected Events Linked by Evolutionary Conditions across human Tumors - a methodology to infer evolutionary inter-dependencies between functional alterations in cancer.

What is this repository for?

  • SELECT is a package for inferring evolutionary dependencies between functional alterations in cancer starting from patterns of alteration occurrences in large tumor sample cohorts.
  • Last Version: 1.6.4

How To

  • Summary of set up
install.packages("devtools")
devtools::install_github("CSOgroup/select")
  • How to use
    • Check the introduction fom vignettes folder or the website.
    • Also refere to methods section of papers to know the best way to apply the method.

Citation

If you use this tool, please cite the papers

Contribution guidelines

  • SELECT was originally developed by Marco Mina at the University of Lausanne, Switzerland.
  • SELECT is currently maintained by Arvind Iyer and memeber of the Computational Systems Oncology lab (CSO) at the University of Lausanne (Unil), Switzerland.

Who do I talk to?

  • For any bugs or feature support in using SELECT, please use the issue tracker.
  • For any other question related to SELECT, please contact Giovanni Ciriello ([email protected]).