diff --git a/README.Rmd b/README.Rmd index 65be98f..1621b83 100644 --- a/README.Rmd +++ b/README.Rmd @@ -19,7 +19,7 @@ knitr::opts_chunk$set( The goal of SelectSim package is to implement the methodology to infer inter-dependencies between functional alterations in cancer. SelectSim estimates the expected number of mutations in a given gene and a given sample from the mutation frequency of the gene, f(g), and the tumor mutation burden (TMB) of the sample, $\mu$(t). These values can be estimated within specific mutation and tumor subsets, to account for heterogeneous tumor types, tissue specificities, and distinct mutational processes -![SelectSim Method](SelectSim_method.png) +![SelectSim Method](https://github.com/CSOgroup/SelectSim/blob/main/SelectSim_method.png) ## Installation diff --git a/README.md b/README.md index e2c4e4d..854b8cf 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,9 @@ heterogeneous tumor types, tissue specificities, and distinct mutational processes
-SelectSim Method +
diff --git a/docs/articles/data_processing.html b/docs/articles/data_processing.html index a87a2a9..b6a8ceb 100644 --- a/docs/articles/data_processing.html +++ b/docs/articles/data_processing.html @@ -220,7 +220,7 @@

Genrating the GAMstruncating_data <- list('gam'=tcga_truc_gam, 'tmb'=truncating_tmb) toc() -#> ##### Creating Truncating GAM ####: 0.214 sec elapsed +#> ##### Creating Truncating GAM ####: 0.216 sec elapsed