Create install script #28
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: DevTesting | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - dev | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/[email protected] | |
| - uses: docker://snakemake/snakemake:v7.19.1 | |
| with: | |
| directory: '.test' | |
| - name: dryrun | |
| shell: bash {0} | |
| run: | | |
| ./install.sh .test/ | |
| cd .test | |
| mv bin/* ./ | |
| mkdir annotation | |
| for f in hg38.fa genes.gtf hg38.bed hg38.tss.bed hg38_refseq.ucsc Ecoli_GCF_000005845.2_ASM584v2_genomic.fna adapters.fa | |
| do | |
| touch annotation/$f | |
| done | |
| docker run -v $PWD:/opt2 snakemake/snakemake:v7.19.1 /bin/bash -c \ | |
| "snakemake --dryrun -c 1 --configfile config_lint.yaml" |