Skip to content

Issues: CAMI-challenge/CAMISIM

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 165 Closed
23 Open 165 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Using CAMISIM v2.0 to generate metagenomes but the storage run out when generating reads using art
#200 opened Nov 24, 2024 by Andyargueasae
3
Error in bam file list in line 106
#199 opened Nov 20, 2024 by SMontesinos
Hi,
#197 opened Nov 2, 2024 by HAJRA-sys
Simulating 16S metabarcoding reads?
#196 opened Oct 30, 2024 by marieleoz
3
Missing main.nf
#195 opened Oct 29, 2024 by mortonjt
1
Guidance on Simulating Metatranscriptomes for CAMI 2 Challenge Short-Read Metagenomes
#194 opened Sep 13, 2024 by ohickl
1
Changing read lengths from the default 150bp bug wontfix
#193 opened Jul 21, 2024 by cberta11
1
NoneType path error when trying to run metagenome_from_profile.py from default_config.ini
#191 opened Jul 16, 2024 by cberta11
3
Handling coverage
#190 opened Jun 27, 2024 by CorvusVaine
"Population must be a sequence. For dicts or sets, use sorted(d). in line 83" [Python 3.11 compatibility?] bug
#154 opened Feb 27, 2023 by prototaxites
@AlphaSquad
4
[MetagenomeSimulationPipeline] Empty bam file list in line 106
#150 opened Jan 6, 2023 by Louis-MG
8
Problem trying to run metagenome_from_profile.py with docker. Is python3 update completed? enhancement help wanted
#149 opened Dec 13, 2022 by MateDuda v2.0
2
GTDB support enhancement
#140 opened Aug 3, 2022 by AlphaSquad v2.0
Gold standard assembly and binning ran despite being set to false bug
#134 opened May 20, 2022 by elximo v2.0
1
Add PBsim2
#131 opened Mar 18, 2022 by AlphaSquad v2.0
Include a pre-built database for ete3.
#127 opened Jan 4, 2022 by AlphaSquad v2.0
1
Update README to latest changes enhancement
#115 opened Jul 16, 2021 by AlphaSquad v2.0
@AlphaSquad
Guidance on abundance.tsv file and output bug
#109 opened Apr 23, 2021 by NienkeMekkes v2.0
@AlphaSquad
8
Using CAMI format input for metagenome_from_profile.py enhancement
#108 opened Apr 16, 2021 by raquellewei v2.0
@AlphaSquad
3
Bioconda version? enhancement
#82 opened Jul 9, 2020 by dkoslicki v2.0
4
[documentation] Give correct arguments to read simulators enhancement
#53 opened Apr 26, 2019 by yoann-dufresne v2.0
3
Unique filenames per run enhancement
#39 opened Jul 19, 2018 by AlphaSquad v2.0
@AlphaSquad
File of Files for CAMISIM enhancement
#35 opened Mar 8, 2018 by AlphaSquad v2.0
@AlphaSquad
2
ProTip! Add no:assignee to see everything that’s not assigned.