This is a collection of objects and functions intended to make interacting with the brentlab rnaseq database simpler. There are two target audiences: wet lab folks who are not primarily computational analysts, and computational analysts. There is some functionality in this collection of objects and functions which overlap the two groups of users, and some that do not. For the functionality which is intended for the computational analysts, a high level of computational fluency is assumed.
Every function, object and data loaded by the package is documented.
Use ?functionName to view the documentation.
In the navbar, click 'Getting Started' for some general instructions on how to use this package, set up your environment, and also how to pull data from the archive rather than directly from the database.
All of the functions in the package, organized by purpose
This is a collection of vignettes -- see the list for instructions on, for example, running the raw read (fastq) processing pipeline.