Code and data for:
Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data
Ma & Brent, 2020 (Bioinformatics)
NetworkConstruction - create the TF-target gene regulatory networks from ChIP, PWM, and DE data
TFA_Optimization - optimize TFA and CS values using a network and gene expression data (new added input datasets)
evaluateTFA.py - run evaluation metrics on inferred TFA values