Scripts for easy image processing
To run the scripts, you will need to have Python and the necessary libraries installed by the install.sh script.
Assuming you have Python installed on your computer, then simply run bash install.sh to install the required packages into your environment.
To normalize image intensities, run the normalize.py script with the following command:
python normalize.py <your_image_file> <channel_to_normalize>
Complete instructions can be found by issuing the following command:
python normalize.py --help